Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:19:06 (32392): wrapper (7.7.26015): starting
07:19:06 (32392): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 07:19:06] Arguments: --nthreads 8
[2025-11-26 07:19:06] Threads: 8
[2025-11-26 07:19:06] Checking for CVMFS
[2025-11-26 07:19:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:19:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:19:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:19:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:19:09] 2.11.2.0 31392 284851 136864 153312 2 75 16507220 25165825 1288 130560 12 140285316 99.877 79211978 2849 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 07:19:09] CVMFS is ok
[2025-11-26 07:19:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:19:09] Checking for apptainer binary...
[2025-11-26 07:19:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:19:09] Running /usr/bin/apptainer --version
[2025-11-26 07:19:09] apptainer version 1.3.2-1.el7
[2025-11-26 07:19:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:19:17] cg-vwn267.simple-grid.lan
[2025-11-26 07:19:17] apptainer works
[2025-11-26 07:19:17] Set ATHENA_PROC_NUMBER=8
[2025-11-26 07:19:17] Set ATHENA_CORE_NUMBER=8
[2025-11-26 07:19:18] Starting ATLAS job with PandaID=6893839061
[2025-11-26 07:19:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:29:42]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:29:42] 2025-11-27 06:28:36,438 | INFO     | monitor loop #5828: job 0:6893839061 is in state 'finished'
[2025-11-27 07:29:42] 2025-11-27 06:28:36,438 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:29:42] 2025-11-27 06:28:37,787 | INFO     | time since job start (86737s) is within the limit (172800.0s)
[2025-11-27 07:29:42] 2025-11-27 06:28:38,957 | INFO     | monitor loop #5829: job 0:6893839061 is in state 'finished'
[2025-11-27 07:29:42] 2025-11-27 06:28:38,957 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:29:42] 2025-11-27 06:28:38,989 | INFO     | PID=3769 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 07:29:42] 2025-11-27 06:28:38,989 | INFO     | .. there are 9 such processes running
[2025-11-27 07:29:42] 2025-11-27 06:28:39,992 | INFO     | time since job start (86739s) is within the limit (172800.0s)
[2025-11-27 07:29:42] 2025-11-27 06:28:41,467 | INFO     | monitor loop #5830: job 0:6893839061 is in state 'finished'
[2025-11-27 07:29:42] 2025-11-27 06:28:41,467 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:29:42] 2025-11-27 06:28:42,002 | INFO     | time since job start (86742s) is within the limit (172800.0s)
[2025-11-27 07:29:42] 2025-11-27 06:28:43,973 | INFO     | monitor loop #5831: job 0:6893839061 is in state 'finished'
[2025-11-27 07:29:42] 2025-11-27 06:28:43,973 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:29:42] 2025-11-27 06:28:44,011 | INFO     | time since job start (86744s) is within the limit (172800.0s)
[2025-11-27 07:29:42] 2025-11-27 06:28:44,727 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 07:29:42] 2025-11-27 06:28:44,728 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 07:29:42] 2025-11-27 06:28:44,730 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6893839061/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 07:29:42] 2025-11-27 06:28:44,731 | INFO     | extracted standard info from prmon json
[2025-11-27 07:29:42] 2025-11-27 06:28:44,731 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:29:42] 2025-11-27 06:28:44,731 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:29:42] 2025-11-27 06:28:44,756 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:29:42] 2025-11-27 06:28:44,759 | INFO     | sum of square deviations: 872934302797.708
[2025-11-27 07:29:42] 2025-11-27 06:28:44,821 | INFO     | sum of deviations: 3021204744808.8794
[2025-11-27 07:29:42] 2025-11-27 06:28:44,821 | INFO     | mean x: 1764181739.5970254
[2025-11-27 07:29:42] 2025-11-27 06:28:44,822 | INFO     | mean y: 2838521.6869688383
[2025-11-27 07:29:42] 2025-11-27 06:28:44,822 | INFO     | intersect: -6102952286.731828
[2025-11-27 07:29:42] 2025-11-27 06:28:44,824 | INFO     | chi2: 21.266280352211258
[2025-11-27 07:29:42] 2025-11-27 06:28:44,826 | INFO     | sum of square deviations: 863694174071.6693
[2025-11-27 07:29:42] 2025-11-27 06:28:44,888 | INFO     | sum of deviations: 3492746073468.148
[2025-11-27 07:29:42] 2025-11-27 06:28:44,889 | INFO     | mean x: 1764181587.100924
[2025-11-27 07:29:42] 2025-11-27 06:28:44,889 | INFO     | mean y: 2846303.273631841
[2025-11-27 07:29:42] 2025-11-27 06:28:44,889 | INFO     | intersect: -7131436289.120292
[2025-11-27 07:29:42] 2025-11-27 06:28:44,891 | INFO     | chi2: 17.982290591149795
[2025-11-27 07:29:42] 2025-11-27 06:28:44,891 | INFO     | current chi2=17.982290591149795 (change=15.442238636339594 %)
[2025-11-27 07:29:42] 2025-11-27 06:28:44,891 | INFO     | right removable region: 1406
[2025-11-27 07:29:42] 2025-11-27 06:28:44,893 | INFO     | sum of square deviations: 863693229181.6682
[2025-11-27 07:29:42] 2025-11-27 06:28:44,968 | INFO     | sum of deviations: 2467489960926.126
[2025-11-27 07:29:42] 2025-11-27 06:28:44,968 | INFO     | mean x: 1764181892.100924
[2025-11-27 07:29:42] 2025-11-27 06:28:44,968 | INFO     | mean y: 2847657.9850746267
[2025-11-27 07:29:42] 2025-11-27 06:28:44,968 | INFO     | intersect: -5037253341.916432
[2025-11-27 07:29:42] 2025-11-27 06:28:44,970 | INFO     | chi2: 17.175009237107506
[2025-11-27 07:29:42] 2025-11-27 06:28:44,970 | INFO     | current chi2=17.175009237107506 (change=19.238301420578907 %)
[2025-11-27 07:29:42] 2025-11-27 06:28:44,970 | INFO     | left removable region: 10
[2025-11-27 07:29:42] 2025-11-27 06:28:44,972 | INFO     | sum of square deviations: 843594033314.2313
[2025-11-27 07:29:42] 2025-11-27 06:28:45,050 | INFO     | sum of deviations: 2573208219829.468
[2025-11-27 07:29:42] 2025-11-27 06:28:45,051 | INFO     | mean x: 1764181861.6095989
[2025-11-27 07:29:42] 2025-11-27 06:28:45,051 | INFO     | mean y: 2865216.5916905445
[2025-11-27 07:29:42] 2025-11-27 06:28:45,051 | INFO     | intersect: -5378404788.049165
[2025-11-27 07:29:42] 2025-11-27 06:28:45,053 | INFO     | chi2: 10.144004509709234
[2025-11-27 07:29:42] 2025-11-27 06:28:45,053 | INFO     | current memory leak: 3.05 B/s (using 1396 data points, chi2=10.14)
[2025-11-27 07:29:42] 2025-11-27 06:28:45,055 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-27 07:29:42] 2025-11-27 06:28:45,055 | INFO     | ..............................
[2025-11-27 07:29:42] 2025-11-27 06:28:45,055 | INFO     | . Timing measurements:
[2025-11-27 07:29:42] 2025-11-27 06:28:45,056 | INFO     | . get job = 0 s
[2025-11-27 07:29:42] 2025-11-27 06:28:45,056 | INFO     | . initial setup = 4 s
[2025-11-27 07:29:42] 2025-11-27 06:28:45,056 | INFO     | . payload setup = 161 s
[2025-11-27 07:29:42] 2025-11-27 06:28:45,056 | INFO     | . stage-in = 0 s
[2025-11-27 07:29:42] 2025-11-27 06:28:45,056 | INFO     | . payload execution = 86275 s
[2025-11-27 07:29:42] 2025-11-27 06:28:45,056 | INFO     | . stage-out = 6 s
[2025-11-27 07:29:42] 2025-11-27 06:28:45,056 | INFO     | . log creation = 0 s
[2025-11-27 07:29:42] 2025-11-27 06:28:45,056 | INFO     | ..............................
[2025-11-27 07:29:42] 2025-11-27 06:28:45,183 | INFO     | 
[2025-11-27 07:29:42] 2025-11-27 06:28:45,183 | INFO     | job summary report
[2025-11-27 07:29:42] 2025-11-27 06:28:45,183 | INFO     | --------------------------------------------------
[2025-11-27 07:29:42] 2025-11-27 06:28:45,183 | INFO     | PanDA job id: 6893839061
[2025-11-27 07:29:42] 2025-11-27 06:28:45,183 | INFO     | task id: 47523449
[2025-11-27 07:29:42] 2025-11-27 06:28:45,184 | INFO     | errors: (none)
[2025-11-27 07:29:42] 2025-11-27 06:28:45,184 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:29:42] 2025-11-27 06:28:45,184 | INFO     | pilot state: finished 
[2025-11-27 07:29:42] 2025-11-27 06:28:45,184 | INFO     | transexitcode: 0
[2025-11-27 07:29:42] 2025-11-27 06:28:45,184 | INFO     | exeerrorcode: 0
[2025-11-27 07:29:42] 2025-11-27 06:28:45,184 | INFO     | exeerrordiag: 
[2025-11-27 07:29:42] 2025-11-27 06:28:45,184 | INFO     | exitcode: 0
[2025-11-27 07:29:42] 2025-11-27 06:28:45,184 | INFO     | exitmsg: OK
[2025-11-27 07:29:42] 2025-11-27 06:28:45,184 | INFO     | cpuconsumptiontime: 324876 s
[2025-11-27 07:29:42] 2025-11-27 06:28:45,184 | INFO     | nevents: 1000
[2025-11-27 07:29:42] 2025-11-27 06:28:45,185 | INFO     | neventsw: 0
[2025-11-27 07:29:42] 2025-11-27 06:28:45,185 | INFO     | pid: 10326
[2025-11-27 07:29:42] 2025-11-27 06:28:45,185 | INFO     | pgrp: 10326
[2025-11-27 07:29:42] 2025-11-27 06:28:45,185 | INFO     | corecount: 8
[2025-11-27 07:29:42] 2025-11-27 06:28:45,185 | INFO     | event service: False
[2025-11-27 07:29:42] 2025-11-27 06:28:45,185 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 23: 2284371, 34: 2284399, 45: 2284427, 55: 2284583, 66: 2284611, 77: 2284639, 88: 2284695, 99: 2284723, 103: 2285293, 
[2025-11-27 07:29:42] 2025-11-27 06:28:45,185 | INFO     | --------------------------------------------------
[2025-11-27 07:29:42] 2025-11-27 06:28:45,185 | INFO     | 
[2025-11-27 07:29:42] 2025-11-27 06:28:45,186 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-27 07:29:42] 2025-11-27 06:28:45,587 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,588 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,588 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,588 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,588 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,588 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,588 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,588 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,588 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,588 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,589 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,589 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,589 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,589 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,589 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,589 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,589 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,589 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:29:42] 2025-11-27 06:28:45,589 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,589 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:29:42] 2025-11-27 06:28:45,590 | INFO     | job 6893839061 has completed (purged errors)
[2025-11-27 07:29:42] 2025-11-27 06:28:45,590 | INFO     | overall cleanup function is called
[2025-11-27 07:29:42] 2025-11-27 06:28:46,611 | INFO     | --- collectZombieJob: --- 10, [10326]
[2025-11-27 07:29:42] 2025-11-27 06:28:46,611 | INFO     | zombie collector waiting for pid 10326
[2025-11-27 07:29:42] 2025-11-27 06:28:46,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:29:42] 2025-11-27 06:28:46,611 | INFO     | collected zombie processes
[2025-11-27 07:29:42] 2025-11-27 06:28:46,612 | INFO     | will attempt to kill all subprocesses of pid=10326
[2025-11-27 07:29:42] 2025-11-27 06:28:46,734 | INFO     | process IDs to be killed: [10326] (in reverse order)
[2025-11-27 07:29:42] 2025-11-27 06:28:47,511 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:29:42] 2025-11-27 06:28:47,518 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:29:42] 2025-11-27 06:28:47,521 | INFO     | did not find any defunct processes belonging to 10326
[2025-11-27 07:29:42] 2025-11-27 06:28:47,524 | INFO     | did not find any defunct processes belonging to 10326
[2025-11-27 07:29:42] 2025-11-27 06:28:47,576 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:29:42] 2025-11-27 06:28:47,576 | INFO     | ready for new job
[2025-11-27 07:29:42] 2025-11-27 06:28:47,577 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:29:42] 2025-11-27 06:28:47,582 | INFO     | ***************************************
[2025-11-27 07:29:42] 2025-11-27 06:28:47,582 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:29:42] 2025-11-27 06:28:47,582 | INFO     | ***************************************
[2025-11-27 07:29:42] 2025-11-27 06:28:47,583 | INFO     | 
[2025-11-27 07:29:42] 2025-11-27 06:28:47,583 | INFO     | pilot is running in a VM
[2025-11-27 07:29:42] 2025-11-27 06:28:47,583 | INFO     | architecture information:
[2025-11-27 07:29:42] 2025-11-27 06:28:47,596 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:29:42] 2025-11-27 06:28:47,763 | INFO     | cat /etc/os-release:
[2025-11-27 07:29:42] NAME="CentOS Linux"
[2025-11-27 07:29:42] VERSION="7 (Core)"
[2025-11-27 07:29:42] ID="centos"
[2025-11-27 07:29:42] ID_LIKE="rhel fedora"
[2025-11-27 07:29:42] VERSION_ID="7"
[2025-11-27 07:29:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:29:42] ANSI_COLOR="0;31"
[2025-11-27 07:29:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:29:42] HOME_URL="https://www.centos.org/"
[2025-11-27 07:29:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:29:42] 
[2025-11-27 07:29:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:29:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:29:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:29:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:29:42] 
[2025-11-27 07:29:42] 2025-11-27 06:28:47,763 | INFO     | ***************************************
[2025-11-27 07:29:42] 2025-11-27 06:28:48,266 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-27 07:29:42] 2025-11-27 06:28:48,557 | INFO     | sufficient remaining disk space (495754149888 B)
[2025-11-27 07:29:42] 2025-11-27 06:28:48,558 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:29:42] 2025-11-27 06:28:48,558 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:29:42] 2025-11-27 06:28:48,558 | INFO     | update_server=False
[2025-11-27 07:29:42] 2025-11-27 06:28:48,558 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:29:42] 2025-11-27 06:28:48,937 | INFO     | all job control threads have been joined
[2025-11-27 07:29:42] 2025-11-27 06:28:49,021 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 07:29:42] 2025-11-27 06:28:49,021 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 07:29:42] 2025-11-27 06:28:49,021 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:29:42] 2025-11-27 06:28:49,021 | INFO     | will abort loop
[2025-11-27 07:29:42] 2025-11-27 06:28:49,314 | INFO     | all data control threads have been joined
[2025-11-27 07:29:42] 2025-11-27 06:28:49,528 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:29:42] 2025-11-27 06:28:49,564 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:29:42] 2025-11-27 06:28:49,684 | INFO     | all payload control threads have been joined
[2025-11-27 07:29:42] 2025-11-27 06:28:49,740 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:29:42] 2025-11-27 06:28:49,943 | INFO     | [job] control thread has finished
[2025-11-27 07:29:42] 2025-11-27 06:28:49,952 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:29:42] 2025-11-27 06:28:50,027 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:29:42] 2025-11-27 06:28:50,085 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:29:42] 2025-11-27 06:28:50,086 | INFO     | [job] validate thread has finished
[2025-11-27 07:29:42] 2025-11-27 06:28:50,180 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:29:42] 2025-11-27 06:28:50,320 | INFO     | [data] control thread has finished
[2025-11-27 07:29:42] 2025-11-27 06:28:50,339 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:29:42] 2025-11-27 06:28:50,386 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:29:42] 2025-11-27 06:28:50,401 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:29:42] 2025-11-27 06:28:50,690 | INFO     | [payload] control thread has finished
[2025-11-27 07:29:42] 2025-11-27 06:28:50,882 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:29:42] 2025-11-27 06:28:50,996 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:29:42] 2025-11-27 06:28:51,186 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:29:42] 2025-11-27 06:28:51,535 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:29:42] 2025-11-27 06:28:53,961 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:29:42] 2025-11-27 06:29:17,169 | INFO     | PID=3769 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 07:29:42] 2025-11-27 06:29:17,169 | INFO     | .. there are 9 such processes running
[2025-11-27 07:29:42] 2025-11-27 06:29:17,170 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:29:42] 2025-11-27 06:29:17,170 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:29:42] 2025-11-27 06:29:17,170 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:29:42] 2025-11-27 06:29:32,134 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:29:42] 2025-11-27 06:29:32,904 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139871865517888)>', '<ExcThread(monitor, started 139871423284992)>']
[2025-11-27 07:29:42] 2025-11-27 06:29:33,265 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:29:42] 2025-11-27 06:29:33,265 | INFO     | [monitor] control thread has ended
[2025-11-27 07:29:42] 2025-11-27 06:29:37,929 | INFO     | all workflow threads have been joined
[2025-11-27 07:29:42] 2025-11-27 06:29:37,929 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:29:42] 2025-11-27 06:29:37,929 | INFO     | traces error code: 0
[2025-11-27 07:29:42] 2025-11-27 06:29:37,930 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:29:42] 2025-11-27 06:29:38,246 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:29:42] 2025-11-27 06:29:38,343 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:29:42] 2025-11-27 06:29:38,388 [wrapper] pilotpid: 3769
[2025-11-27 07:29:42] 2025-11-27 06:29:38,446 [wrapper] Pilot exit status: 0
[2025-11-27 07:29:42] 2025-11-27 06:29:38,821 [wrapper] pandaids: 6893839061
[2025-11-27 07:29:42] 2025-11-27 06:29:39,950 [wrapper] cleanup supervisor_pilot 18796 3770
[2025-11-27 07:29:42] 2025-11-27 06:29:40,056 [wrapper] Test setup, not cleaning
[2025-11-27 07:29:42] 2025-11-27 06:29:40,199 [wrapper] apfmon messages muted
[2025-11-27 07:29:42] 2025-11-27 06:29:40,323 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:29:42] 2025-11-27 06:29:40,385 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:29:42]  *** Error codes and diagnostics ***
[2025-11-27 07:29:42]     "exeErrorCode": 0,
[2025-11-27 07:29:42]     "exeErrorDiag": "",
[2025-11-27 07:29:42]     "pilotErrorCode": 0,
[2025-11-27 07:29:42]     "pilotErrorDiag": "",
[2025-11-27 07:29:42]  *** Listing of results directory ***
[2025-11-27 07:29:42] total 1346232
[2025-11-27 07:29:42] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-27 07:29:42] -rwx------. 1 boinc boinc     36292 Nov 20 11:18 runpilot2-wrapper.sh
[2025-11-27 07:29:42] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:19 queuedata.json
[2025-11-27 07:29:42] -rw-r--r--. 1 boinc boinc       100 Nov 26 07:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:29:42] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 07:19 run_atlas
[2025-11-27 07:29:42] -rw-r--r--. 1 boinc boinc       105 Nov 26 07:19 job.xml
[2025-11-27 07:29:42] -rw-r--r--. 2 boinc boinc 411214281 Nov 26 07:19 EVNT.47493127._000143.pool.root.1
[2025-11-27 07:29:42] -rw-r--r--. 1 boinc boinc      6391 Nov 26 07:19 init_data.xml
[2025-11-27 07:29:42] -rw-r--r--. 2 boinc boinc     15847 Nov 26 07:19 start_atlas.sh
[2025-11-27 07:29:42] drwxrwx--x. 2 boinc boinc        68 Nov 26 07:19 shared
[2025-11-27 07:29:42] -rw-r--r--. 2 boinc boinc    590100 Nov 26 07:19 input.tar.gz
[2025-11-27 07:29:42] -rw-r--r--. 1 boinc boinc         0 Nov 26 07:19 boinc_lockfile
[2025-11-27 07:29:42] -rw-r--r--. 1 boinc boinc      2786 Nov 26 07:19 pandaJob.out
[2025-11-27 07:29:42] -rw-------. 1 boinc boinc    991877 Nov 26 07:22 agis_schedconf.cvmfs.json
[2025-11-27 07:29:42] drwx------. 5 boinc boinc      4096 Nov 26 07:23 pilot3
[2025-11-27 07:29:42] -rw-r--r--. 1 boinc boinc       533 Nov 27 06:58 boinc_task_state.xml
[2025-11-27 07:29:42] -rw-------. 1 boinc boinc 935359208 Nov 27 07:26 HITS.47523449._001430.pool.root.1
[2025-11-27 07:29:42] -rw-------. 1 boinc boinc      1029 Nov 27 07:27 memory_monitor_summary.json
[2025-11-27 07:29:42] -rw-------. 1 boinc boinc   1516240 Nov 27 07:27 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:29:42] -rw-------. 1 boinc boinc   2499554 Nov 27 07:27 log.47523449._001430.job.log.tgz.1
[2025-11-27 07:29:42] -rw-------. 1 boinc boinc      8641 Nov 27 07:28 heartbeat.json
[2025-11-27 07:29:42] -rw-------. 1 boinc boinc        95 Nov 27 07:29 pilot_heartbeat.json
[2025-11-27 07:29:42] -rw-------. 1 boinc boinc      5069 Nov 27 07:29 pilotlog.txt
[2025-11-27 07:29:42] -rw-r--r--. 1 boinc boinc        29 Nov 27 07:29 wrapper_checkpoint.txt
[2025-11-27 07:29:42] -rw-r--r--. 1 boinc boinc      8192 Nov 27 07:29 boinc_mmap_file
[2025-11-27 07:29:42] -rw-------. 1 boinc boinc  11531473 Nov 27 07:29 log.47523449._001430.job.log.1
[2025-11-27 07:29:42] -rw-------. 1 boinc boinc       353 Nov 27 07:29 output.list
[2025-11-27 07:29:42] -rw-r--r--. 1 boinc boinc       620 Nov 27 07:29 runtime_log
[2025-11-27 07:29:42] -rw-------. 1 boinc boinc  14049280 Nov 27 07:29 result.tar.gz
[2025-11-27 07:29:42] -rw-r--r--. 1 boinc boinc      8817 Nov 27 07:29 runtime_log.err
[2025-11-27 07:29:42] -rw-------. 1 boinc boinc       662 Nov 27 07:29 3arNDmZvGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQNGKDmtJJQEo.diag
[2025-11-27 07:29:42] -rw-r--r--. 1 boinc boinc     21491 Nov 27 07:29 stderr.txt
[2025-11-27 07:29:42] HITS file was successfully produced:
[2025-11-27 07:29:42] -rw-------. 1 boinc boinc 935359208 Nov 27 07:26 shared/HITS.pool.root.1
[2025-11-27 07:29:42]  *** Contents of shared directory: ***
[2025-11-27 07:29:42] total 1329336
[2025-11-27 07:29:42] -rw-r--r--. 2 boinc boinc 411214281 Nov 26 07:19 ATLAS.root_0
[2025-11-27 07:29:42] -rw-r--r--. 2 boinc boinc     15847 Nov 26 07:19 start_atlas.sh
[2025-11-27 07:29:42] -rw-r--r--. 2 boinc boinc    590100 Nov 26 07:19 input.tar.gz
[2025-11-27 07:29:42] -rw-------. 1 boinc boinc 935359208 Nov 27 07:26 HITS.pool.root.1
[2025-11-27 07:29:42] -rw-------. 1 boinc boinc  14049280 Nov 27 07:29 result.tar.gz
07:29:44 (32392): run_atlas exited; CPU time 325494.573963
07:29:44 (32392): called boinc_finish(0)

</stderr_txt>
]]>

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