Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:19:51 (32218): wrapper (7.7.26015): starting
20:19:51 (32218): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 20:19:51] Arguments: --nthreads 8
[2025-11-23 20:19:51] Threads: 8
[2025-11-23 20:19:51] Checking for CVMFS
[2025-11-23 20:19:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 20:19:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 20:19:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 20:19:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 20:19:52] 2.11.2.0 24877 114135 139604 153227 2 90 16637020 18432001 1885 130560 0 82438429 99.974 4738897 31853 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 20:19:52] CVMFS is ok
[2025-11-23 20:19:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 20:19:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 20:19:52] Further information can be found at the LHC@home message board.
[2025-11-23 20:19:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 20:19:52] Checking for apptainer binary...
[2025-11-23 20:19:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 20:19:52] Running /usr/bin/apptainer --version
[2025-11-23 20:19:52] apptainer version 1.3.2-1.el7
[2025-11-23 20:19:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 20:19:53] c-206-3.aglt2.org
[2025-11-23 20:19:53] apptainer works
[2025-11-23 20:19:53] Set ATHENA_PROC_NUMBER=8
[2025-11-23 20:19:53] Set ATHENA_CORE_NUMBER=8
[2025-11-23 20:19:53] Starting ATLAS job with PandaID=6895354737
[2025-11-23 20:19:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 15:42:27]  *** The last 200 lines of the pilot log: ***
[2025-11-24 15:42:27] 2025-11-24 20:41:53,496 | INFO     | time since job start (69709s) is within the limit (172800.0s)
[2025-11-24 15:42:27] 2025-11-24 20:41:53,704 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 15:42:27] 2025-11-24 20:41:53,711 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2489.0416666666665
[2025-11-24 15:42:27] 2025-11-24 20:41:53,714 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895354737/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 15:42:27] 2025-11-24 20:41:53,714 | INFO     | extracted standard info from prmon json
[2025-11-24 15:42:27] 2025-11-24 20:41:53,715 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 15:42:27] 2025-11-24 20:41:53,715 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 15:42:27] 2025-11-24 20:41:53,740 | INFO     | fitting pss+swap vs Time
[2025-11-24 15:42:27] 2025-11-24 20:41:53,741 | INFO     | sum of square deviations: 463036371866.0788
[2025-11-24 15:42:27] 2025-11-24 20:41:53,765 | INFO     | sum of deviations: 2212845457036.2236
[2025-11-24 15:42:27] 2025-11-24 20:41:53,765 | INFO     | mean x: 1763982060.60105
[2025-11-24 15:42:27] 2025-11-24 20:41:53,765 | INFO     | mean y: 2866722.149606299
[2025-11-24 15:42:27] 2025-11-24 20:41:53,765 | INFO     | intersect: -8427183110.357703
[2025-11-24 15:42:27] 2025-11-24 20:41:53,766 | INFO     | chi2: 6.1052050749012
[2025-11-24 15:42:27] 2025-11-24 20:41:53,767 | INFO     | sum of square deviations: 456986505171.76416
[2025-11-24 15:42:27] 2025-11-24 20:41:53,792 | INFO     | sum of deviations: 2575879418401.103
[2025-11-24 15:42:27] 2025-11-24 20:41:53,792 | INFO     | mean x: 1763981908.1036906
[2025-11-24 15:42:27] 2025-11-24 20:41:53,792 | INFO     | mean y: 2875868.880492091
[2025-11-24 15:42:27] 2025-11-24 20:41:53,792 | INFO     | intersect: -9940097588.964518
[2025-11-24 15:42:27] 2025-11-24 20:41:53,793 | INFO     | chi2: 3.158606928691135
[2025-11-24 15:42:27] 2025-11-24 20:41:53,793 | INFO     | current chi2=3.158606928691135 (change=48.263704659548225 %)
[2025-11-24 15:42:27] 2025-11-24 20:41:53,794 | INFO     | sum of square deviations: 450989569702.4333
[2025-11-24 15:42:27] 2025-11-24 20:41:53,829 | INFO     | sum of deviations: 2717036762414.9355
[2025-11-24 15:42:27] 2025-11-24 20:41:53,829 | INFO     | mean x: 1763981755.6063547
[2025-11-24 15:42:27] 2025-11-24 20:41:53,830 | INFO     | mean y: 2879455.3698146516
[2025-11-24 15:42:27] 2025-11-24 20:41:53,830 | INFO     | intersect: -10624424589.320257
[2025-11-24 15:42:27] 2025-11-24 20:41:53,831 | INFO     | chi2: 2.572920848834104
[2025-11-24 15:42:27] 2025-11-24 20:41:53,832 | INFO     | current chi2=2.572920848834104 (change=18.54254401004963 %)
[2025-11-24 15:42:27] 2025-11-24 20:41:53,832 | INFO     | right removable region: 1132
[2025-11-24 15:42:27] 2025-11-24 20:41:53,834 | INFO     | sum of square deviations: 456986086101.76404
[2025-11-24 15:42:27] 2025-11-24 20:41:53,876 | INFO     | sum of deviations: 1900749334775.9573
[2025-11-24 15:42:27] 2025-11-24 20:41:53,877 | INFO     | mean x: 1763982213.1036906
[2025-11-24 15:42:27] 2025-11-24 20:41:53,877 | INFO     | mean y: 2874580.7715289984
[2025-11-24 15:42:27] 2025-11-24 20:41:53,877 | INFO     | intersect: -7334084070.890399
[2025-11-24 15:42:27] 2025-11-24 20:41:53,879 | INFO     | chi2: 3.918398494165407
[2025-11-24 15:42:27] 2025-11-24 20:41:53,879 | INFO     | current chi2=3.918398494165407 (change=35.81872441477621 %)
[2025-11-24 15:42:27] 2025-11-24 20:41:53,881 | INFO     | sum of square deviations: 450988870154.85626
[2025-11-24 15:42:27] 2025-11-24 20:41:53,922 | INFO     | sum of deviations: 1805170719300.948
[2025-11-24 15:42:27] 2025-11-24 20:41:53,922 | INFO     | mean x: 1763982365.6045897
[2025-11-24 15:42:27] 2025-11-24 20:41:53,922 | INFO     | mean y: 2877010.8949691085
[2025-11-24 15:42:27] 2025-11-24 20:41:53,922 | INFO     | intersect: -7057805694.332843
[2025-11-24 15:42:27] 2025-11-24 20:41:53,924 | INFO     | chi2: 3.814787057988075
[2025-11-24 15:42:27] 2025-11-24 20:41:53,924 | INFO     | current chi2=3.814787057988075 (change=2.6442291750472022 %)
[2025-11-24 15:42:27] 2025-11-24 20:41:53,924 | INFO     | left removable region: 20
[2025-11-24 15:42:27] 2025-11-24 20:41:53,926 | INFO     | sum of square deviations: 426374143804.6149
[2025-11-24 15:42:27] 2025-11-24 20:41:53,949 | INFO     | sum of deviations: 2162981771703.5945
[2025-11-24 15:42:27] 2025-11-24 20:41:53,950 | INFO     | mean x: 1763982335.1097121
[2025-11-24 15:42:27] 2025-11-24 20:41:53,950 | INFO     | mean y: 2893524.3803956835
[2025-11-24 15:42:27] 2025-11-24 20:41:53,950 | INFO     | intersect: -8945729866.342556
[2025-11-24 15:42:27] 2025-11-24 20:41:53,951 | INFO     | chi2: 0.19128207582070655
[2025-11-24 15:42:27] 2025-11-24 20:41:53,951 | INFO     | current memory leak: 5.07 B/s (using 1112 data points, chi2=0.19)
[2025-11-24 15:42:27] 2025-11-24 20:41:53,952 | INFO     | could have reported an average CPU frequency of 2618 MHz (41 samples)
[2025-11-24 15:42:27] 2025-11-24 20:41:53,952 | INFO     | ..............................
[2025-11-24 15:42:27] 2025-11-24 20:41:53,952 | INFO     | . Timing measurements:
[2025-11-24 15:42:27] 2025-11-24 20:41:53,952 | INFO     | . get job = 0 s
[2025-11-24 15:42:27] 2025-11-24 20:41:53,952 | INFO     | . initial setup = 2 s
[2025-11-24 15:42:27] 2025-11-24 20:41:53,952 | INFO     | . payload setup = 5 s
[2025-11-24 15:42:27] 2025-11-24 20:41:53,953 | INFO     | . stage-in = 0 s
[2025-11-24 15:42:27] 2025-11-24 20:41:53,953 | INFO     | . payload execution = 69675 s
[2025-11-24 15:42:27] 2025-11-24 20:41:53,953 | INFO     | . stage-out = 4 s
[2025-11-24 15:42:27] 2025-11-24 20:41:53,953 | INFO     | . log creation = 0 s
[2025-11-24 15:42:27] 2025-11-24 20:41:53,953 | INFO     | ..............................
[2025-11-24 15:42:27] 2025-11-24 20:41:54,304 | INFO     | 
[2025-11-24 15:42:27] 2025-11-24 20:41:54,304 | INFO     | job summary report
[2025-11-24 15:42:27] 2025-11-24 20:41:54,304 | INFO     | --------------------------------------------------
[2025-11-24 15:42:27] 2025-11-24 20:41:54,304 | INFO     | PanDA job id: 6895354737
[2025-11-24 15:42:27] 2025-11-24 20:41:54,305 | INFO     | task id: 47556137
[2025-11-24 15:42:27] 2025-11-24 20:41:54,305 | INFO     | errors: (none)
[2025-11-24 15:42:27] 2025-11-24 20:41:54,305 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 15:42:27] 2025-11-24 20:41:54,305 | INFO     | pilot state: finished 
[2025-11-24 15:42:27] 2025-11-24 20:41:54,305 | INFO     | transexitcode: 0
[2025-11-24 15:42:27] 2025-11-24 20:41:54,305 | INFO     | exeerrorcode: 0
[2025-11-24 15:42:27] 2025-11-24 20:41:54,305 | INFO     | exeerrordiag: 
[2025-11-24 15:42:27] 2025-11-24 20:41:54,305 | INFO     | exitcode: 0
[2025-11-24 15:42:27] 2025-11-24 20:41:54,306 | INFO     | exitmsg: OK
[2025-11-24 15:42:27] 2025-11-24 20:41:54,306 | INFO     | cpuconsumptiontime: 537575 s
[2025-11-24 15:42:27] 2025-11-24 20:41:54,306 | INFO     | nevents: 1000
[2025-11-24 15:42:27] 2025-11-24 20:41:54,306 | INFO     | neventsw: 0
[2025-11-24 15:42:27] 2025-11-24 20:41:54,306 | INFO     | pid: 10202
[2025-11-24 15:42:27] 2025-11-24 20:41:54,307 | INFO     | pgrp: 10202
[2025-11-24 15:42:27] 2025-11-24 20:41:54,307 | INFO     | corecount: 8
[2025-11-24 15:42:27] 2025-11-24 20:41:54,307 | INFO     | event service: False
[2025-11-24 15:42:27] 2025-11-24 20:41:54,307 | INFO     | sizes: {0: 2298579, 1: 2298834, 5: 2299096, 12: 2299152, 69684: 2355521, 69690: 2365306, 69691: 2365490, 69695: 2365832}
[2025-11-24 15:42:27] 2025-11-24 20:41:54,307 | INFO     | --------------------------------------------------
[2025-11-24 15:42:27] 2025-11-24 20:41:54,307 | INFO     | 
[2025-11-24 15:42:27] 2025-11-24 20:41:54,308 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 15:42:27] 2025-11-24 20:41:54,326 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,327 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,327 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,327 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,327 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,327 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,327 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,328 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,328 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,328 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,328 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,328 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,329 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,329 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,329 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,329 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,329 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,329 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 15:42:27] 2025-11-24 20:41:54,330 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,330 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 15:42:27] 2025-11-24 20:41:54,330 | INFO     | job 6895354737 has completed (purged errors)
[2025-11-24 15:42:27] 2025-11-24 20:41:54,330 | INFO     | overall cleanup function is called
[2025-11-24 15:42:27] 2025-11-24 20:41:54,684 | INFO     | PID=3590 has CPU usage=19.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 15:42:27] 2025-11-24 20:41:54,685 | INFO     | .. there are 3 such processes running
[2025-11-24 15:42:27] 2025-11-24 20:41:55,347 | INFO     | --- collectZombieJob: --- 10, [10202]
[2025-11-24 15:42:27] 2025-11-24 20:41:55,347 | INFO     | zombie collector waiting for pid 10202
[2025-11-24 15:42:27] 2025-11-24 20:41:55,348 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 15:42:27] 2025-11-24 20:41:55,348 | INFO     | collected zombie processes
[2025-11-24 15:42:27] 2025-11-24 20:41:55,348 | INFO     | will attempt to kill all subprocesses of pid=10202
[2025-11-24 15:42:27] 2025-11-24 20:41:55,514 | INFO     | process IDs to be killed: [10202] (in reverse order)
[2025-11-24 15:42:27] 2025-11-24 20:41:55,573 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 15:42:27] 2025-11-24 20:41:55,573 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 15:42:27] 2025-11-24 20:41:55,579 | INFO     | did not find any defunct processes belonging to 10202
[2025-11-24 15:42:27] 2025-11-24 20:41:55,584 | INFO     | did not find any defunct processes belonging to 10202
[2025-11-24 15:42:27] 2025-11-24 20:41:55,594 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 15:42:27] 2025-11-24 20:41:55,594 | INFO     | ready for new job
[2025-11-24 15:42:27] 2025-11-24 20:41:55,595 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 15:42:27] 2025-11-24 20:41:55,600 | INFO     | ***************************************
[2025-11-24 15:42:27] 2025-11-24 20:41:55,600 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 15:42:27] 2025-11-24 20:41:55,600 | INFO     | ***************************************
[2025-11-24 15:42:27] 2025-11-24 20:41:55,600 | INFO     | 
[2025-11-24 15:42:27] 2025-11-24 20:41:55,601 | INFO     | architecture information:
[2025-11-24 15:42:27] 2025-11-24 20:41:55,602 | INFO     | executing command: cat /etc/os-release
[2025-11-24 15:42:27] 2025-11-24 20:41:55,615 | INFO     | cat /etc/os-release:
[2025-11-24 15:42:27] NAME="CentOS Linux"
[2025-11-24 15:42:27] VERSION="7 (Core)"
[2025-11-24 15:42:27] ID="centos"
[2025-11-24 15:42:27] ID_LIKE="rhel fedora"
[2025-11-24 15:42:27] VERSION_ID="7"
[2025-11-24 15:42:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 15:42:27] ANSI_COLOR="0;31"
[2025-11-24 15:42:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 15:42:27] HOME_URL="https://www.centos.org/"
[2025-11-24 15:42:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 15:42:27] 
[2025-11-24 15:42:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 15:42:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 15:42:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 15:42:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 15:42:27] 
[2025-11-24 15:42:27] 2025-11-24 20:41:55,615 | INFO     | ***************************************
[2025-11-24 15:42:27] 2025-11-24 20:41:56,118 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 15:42:27] 2025-11-24 20:41:56,134 | INFO     | sufficient remaining disk space (26493321216 B)
[2025-11-24 15:42:27] 2025-11-24 20:41:56,134 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 15:42:27] 2025-11-24 20:41:56,135 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 15:42:27] 2025-11-24 20:41:56,135 | INFO     | update_server=False
[2025-11-24 15:42:27] 2025-11-24 20:41:56,135 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 15:42:27] 2025-11-24 20:41:56,135 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 15:42:27] 2025-11-24 20:41:56,135 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 15:42:27] 2025-11-24 20:41:56,136 | INFO     | aborting loop
[2025-11-24 15:42:27] 2025-11-24 20:41:56,303 | INFO     | all job control threads have been joined
[2025-11-24 15:42:27] 2025-11-24 20:41:56,569 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 15:42:27] 2025-11-24 20:41:57,083 | INFO     | all data control threads have been joined
[2025-11-24 15:42:27] 2025-11-24 20:41:57,140 | INFO     | [job] retrieve thread has finished
[2025-11-24 15:42:27] 2025-11-24 20:41:57,141 | INFO     | [job] job monitor thread has finished
[2025-11-24 15:42:27] 2025-11-24 20:41:57,187 | INFO     | [job] validate thread has finished
[2025-11-24 15:42:27] 2025-11-24 20:41:57,273 | INFO     | [payload] validate_post thread has finished
[2025-11-24 15:42:27] 2025-11-24 20:41:57,283 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 15:42:27] 2025-11-24 20:41:57,309 | INFO     | [job] control thread has finished
[2025-11-24 15:42:27] 2025-11-24 20:41:57,349 | INFO     | [data] copytool_in thread has finished
[2025-11-24 15:42:27] 2025-11-24 20:41:57,604 | INFO     | [payload] failed_post thread has finished
[2025-11-24 15:42:27] 2025-11-24 20:41:57,615 | INFO     | all payload control threads have been joined
[2025-11-24 15:42:27] 2025-11-24 20:41:57,803 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 15:42:27] 2025-11-24 20:41:58,088 | INFO     | [data] control thread has finished
[2025-11-24 15:42:27] 2025-11-24 20:41:58,388 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 15:42:27] 2025-11-24 20:41:58,388 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 15:42:27] 2025-11-24 20:41:58,574 | INFO     | [data] copytool_out thread has finished
[2025-11-24 15:42:27] 2025-11-24 20:41:58,584 | INFO     | [monitor] cgroup control has ended
[2025-11-24 15:42:27] 2025-11-24 20:41:58,621 | INFO     | [payload] control thread has finished
[2025-11-24 15:42:27] 2025-11-24 20:41:59,094 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 15:42:27] 2025-11-24 20:42:00,100 | INFO     | [job] queue monitor thread has finished
[2025-11-24 15:42:27] 2025-11-24 20:42:00,141 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 15:42:27] 2025-11-24 20:42:00,749 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139917769426752)>', '<ExcThread(monitor, started 139916814055168)>']
[2025-11-24 15:42:27] 2025-11-24 20:42:05,774 | INFO     | all workflow threads have been joined
[2025-11-24 15:42:27] 2025-11-24 20:42:05,774 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 15:42:27] 2025-11-24 20:42:05,775 | INFO     | traces error code: 0
[2025-11-24 15:42:27] 2025-11-24 20:42:05,775 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 15:42:27] 2025-11-24 20:42:26,907 | INFO     | PID=3590 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 15:42:27] 2025-11-24 20:42:26,907 | INFO     | .. there are 3 such processes running
[2025-11-24 15:42:27] 2025-11-24 20:42:26,908 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 15:42:27] 2025-11-24 20:42:26,908 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 15:42:27] 2025-11-24 20:42:26,908 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 15:42:27] 2025-11-24 20:42:26,908 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 15:42:27] 2025-11-24 20:42:26,908 | INFO     | [monitor] control thread has ended
[2025-11-24 15:42:27] 2025-11-24 20:42:27,029 [wrapper] ==== pilot stdout END ====
[2025-11-24 15:42:27] 2025-11-24 20:42:27,032 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 15:42:27] 2025-11-24 20:42:27,034 [wrapper] pilotpid: 3590
[2025-11-24 15:42:27] 2025-11-24 20:42:27,036 [wrapper] Pilot exit status: 0
[2025-11-24 15:42:27] 2025-11-24 20:42:27,046 [wrapper] pandaids: 6895354737
[2025-11-24 15:42:27] 2025-11-24 20:42:27,087 [wrapper] cleanup supervisor_pilot 13491 3591
[2025-11-24 15:42:27] 2025-11-24 20:42:27,089 [wrapper] Test setup, not cleaning
[2025-11-24 15:42:27] 2025-11-24 20:42:27,091 [wrapper] apfmon messages muted
[2025-11-24 15:42:27] 2025-11-24 20:42:27,094 [wrapper] ==== wrapper stdout END ====
[2025-11-24 15:42:27] 2025-11-24 20:42:27,096 [wrapper] ==== wrapper stderr END ====
[2025-11-24 15:42:27]  *** Error codes and diagnostics ***
[2025-11-24 15:42:27]     "exeErrorCode": 0,
[2025-11-24 15:42:27]     "exeErrorDiag": "",
[2025-11-24 15:42:27]     "pilotErrorCode": 0,
[2025-11-24 15:42:27]     "pilotErrorDiag": "",
[2025-11-24 15:42:27]  *** Listing of results directory ***
[2025-11-24 15:42:27] total 1329012
[2025-11-24 15:42:27] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 00:21 pilot3.tar.gz
[2025-11-24 15:42:27] -rwx------ 1 boincer umatlas     36292 Nov 23 00:30 runpilot2-wrapper.sh
[2025-11-24 15:42:27] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 00:30 queuedata.json
[2025-11-24 15:42:27] -rw-r--r-- 1 boincer umatlas       100 Nov 23 20:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 15:42:27] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 20:19 run_atlas
[2025-11-24 15:42:27] -rw-r--r-- 1 boincer umatlas       105 Nov 23 20:19 job.xml
[2025-11-24 15:42:27] -rw-r--r-- 2 boincer umatlas 409510339 Nov 23 20:19 EVNT.47483658._000630.pool.root.1
[2025-11-24 15:42:27] drwxrwx--x 2 boincer umatlas      4096 Nov 23 20:19 shared
[2025-11-24 15:42:27] -rw-r--r-- 2 boincer umatlas    590100 Nov 23 20:19 input.tar.gz
[2025-11-24 15:42:27] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 20:19 start_atlas.sh
[2025-11-24 15:42:27] -rw-r--r-- 1 boincer umatlas         0 Nov 23 20:19 boinc_lockfile
[2025-11-24 15:42:27] -rw-r--r-- 1 boincer umatlas      2785 Nov 23 20:19 pandaJob.out
[2025-11-24 15:42:27] -rw------- 1 boincer umatlas        57 Nov 23 20:19 setup.sh.local
[2025-11-24 15:42:27] -rw------- 1 boincer umatlas    989786 Nov 23 20:20 agis_schedconf.cvmfs.json
[2025-11-24 15:42:27] drwx------ 5 boincer umatlas      4096 Nov 23 20:20 pilot3
[2025-11-24 15:42:27] -rw-r--r-- 1 boincer umatlas       533 Nov 24 15:31 boinc_task_state.xml
[2025-11-24 15:42:27] -rw-r--r-- 1 boincer umatlas      5953 Nov 24 15:36 init_data.xml
[2025-11-24 15:42:27] -rw------- 1 boincer umatlas 923485605 Nov 24 15:41 HITS.47556137._006258.pool.root.1
[2025-11-24 15:42:27] -rw------- 1 boincer umatlas      1067 Nov 24 15:41 memory_monitor_summary.json
[2025-11-24 15:42:27] -rw------- 1 boincer umatlas   1516227 Nov 24 15:41 agis_ddmendpoints.agis.ALL.json
[2025-11-24 15:42:27] -rw------- 1 boincer umatlas   2320128 Nov 24 15:41 log.47556137._006258.job.log.tgz.1
[2025-11-24 15:42:27] -rw------- 1 boincer umatlas        95 Nov 24 15:41 pilot_heartbeat.json
[2025-11-24 15:42:27] -rw------- 1 boincer umatlas      8660 Nov 24 15:41 heartbeat.json
[2025-11-24 15:42:27] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 15:42 boinc_mmap_file
[2025-11-24 15:42:27] -rw-r--r-- 1 boincer umatlas        29 Nov 24 15:42 wrapper_checkpoint.txt
[2025-11-24 15:42:27] -rw------- 1 boincer umatlas       819 Nov 24 15:42 pilotlog.txt
[2025-11-24 15:42:27] -rw------- 1 boincer umatlas   9677849 Nov 24 15:42 log.47556137._006258.job.log.1
[2025-11-24 15:42:27] -rw------- 1 boincer umatlas       353 Nov 24 15:42 output.list
[2025-11-24 15:42:27] -rw-r--r-- 1 boincer umatlas       620 Nov 24 15:42 runtime_log
[2025-11-24 15:42:27] -rw------- 1 boincer umatlas  12021760 Nov 24 15:42 result.tar.gz
[2025-11-24 15:42:27] -rw-r--r-- 1 boincer umatlas      9338 Nov 24 15:42 runtime_log.err
[2025-11-24 15:42:27] -rw------- 1 boincer umatlas       667 Nov 24 15:42 FvJODmdrHh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHfKKDmUaxwJo.diag
[2025-11-24 15:42:27] -rw-r--r-- 1 boincer umatlas     21366 Nov 24 15:42 stderr.txt
[2025-11-24 15:42:27] HITS file was successfully produced:
[2025-11-24 15:42:27] -rw------- 1 boincer umatlas 923485605 Nov 24 15:41 shared/HITS.pool.root.1
[2025-11-24 15:42:27]  *** Contents of shared directory: ***
[2025-11-24 15:42:27] total 1314100
[2025-11-24 15:42:27] -rw-r--r-- 2 boincer umatlas 409510339 Nov 23 20:19 ATLAS.root_0
[2025-11-24 15:42:27] -rw-r--r-- 2 boincer umatlas    590100 Nov 23 20:19 input.tar.gz
[2025-11-24 15:42:27] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 20:19 start_atlas.sh
[2025-11-24 15:42:27] -rw------- 1 boincer umatlas 923485605 Nov 24 15:41 HITS.pool.root.1
[2025-11-24 15:42:27] -rw------- 1 boincer umatlas  12021760 Nov 24 15:42 result.tar.gz
15:42:28 (32218): run_atlas exited; CPU time 536297.200892
15:42:28 (32218): called boinc_finish(0)

</stderr_txt>
]]>

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