Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-25 20:20:17 (122858): vboxwrapper version 26210
2025-11-25 20:20:17 (122858): BOINC client version: 8.2.2
2025-11-25 20:20:18 (122858): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-11-25 20:20:18 (122858): Successfully copied 'init_data.xml' to the shared directory.
2025-11-25 20:20:18 (122858): Create VM. (boinc_ba2f7584b2b97518, slot#0)
2025-11-25 20:20:18 (122858): Setting Memory Size for VM. (4400MB)
2025-11-25 20:20:18 (122858): Setting CPU Count for VM. (4)
2025-11-25 20:20:18 (122858): Setting Chipset Options for VM.
2025-11-25 20:20:18 (122858): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-25 20:20:18 (122858): Setting Boot Options for VM.
2025-11-25 20:20:18 (122858): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-25 20:20:18 (122858): Enabling VM Network Access.
2025-11-25 20:20:18 (122858): Disabling USB Support for VM.
2025-11-25 20:20:18 (122858): Disabling COM Port Support for VM.
2025-11-25 20:20:18 (122858): Disabling LPT Port Support for VM.
2025-11-25 20:20:18 (122858): Disabling Audio Support for VM.
2025-11-25 20:20:18 (122858): Disabling Clipboard Support for VM.
2025-11-25 20:20:18 (122858): Disabling Drag and Drop Support for VM.
2025-11-25 20:20:18 (122858): Adding storage controller(s) to VM.
2025-11-25 20:20:18 (122858): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-25 20:20:18 (122858): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-25 20:20:18 (122858): forwarding host port 33571 to guest port 80
2025-11-25 20:20:19 (122858): Enabling remote desktop for VM.
2025-11-25 20:20:19 (122858): Enabling shared directory for VM.
2025-11-25 20:20:19 (122858): Starting VM using VBoxManage interface. (boinc_ba2f7584b2b97518, slot#0)
2025-11-25 20:20:20 (122858): Successfully started VM. (PID = '123133')
2025-11-25 20:20:20 (122858): Reporting VM Process ID to BOINC.
2025-11-25 20:20:20 (122858): Guest Log: BIOS: VirtualBox 7.1.10
2025-11-25 20:20:20 (122858): Guest Log: CPUID EDX: 0x178bfbff
2025-11-25 20:20:20 (122858): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-25 20:20:20 (122858): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-25 20:20:20 (122858): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-25 20:20:20 (122858): Detected: Web Application Enabled (http://localhost:33571)
2025-11-25 20:20:20 (122858): Detected: Remote Desktop Enabled (localhost:56299)
2025-11-25 20:20:20 (122858): Preference change detected
2025-11-25 20:20:20 (122858): Setting CPU throttle for VM. (100%)
2025-11-25 20:20:20 (122858): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-25 20:20:22 (122858): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-25 20:20:22 (122858): Guest Log: BIOS: Booting from Hard Disk...
2025-11-25 20:20:25 (122858): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-25 20:20:25 (122858): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-25 20:20:25 (122858): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-25 20:20:31 (122858): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-25 20:20:31 (122858): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-25 20:20:39 (122858): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-25 20:20:39 (122858): Guest Log: 00:00:00.000394 main     Log opened 2025-11-25T19:20:37.840958000Z
2025-11-25 20:20:39 (122858): Guest Log: 00:00:00.000700 main     OS Product: Linux
2025-11-25 20:20:39 (122858): Guest Log: 00:00:00.000776 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-25 20:20:39 (122858): Guest Log: 00:00:00.000836 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-25 20:20:39 (122858): Guest Log: 00:00:00.000915 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-25 20:20:39 (122858): Guest Log: 00:00:00.000917 main     Process ID: 1310
2025-11-25 20:20:39 (122858): Guest Log: 00:00:00.000918 main     Package type: LINUX_64BITS_GENERIC
2025-11-25 20:20:39 (122858): Guest Log: 00:00:00.003583 main     5.2.32 r132073 started. Verbose level = 0
2025-11-25 20:20:39 (122858): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-25 20:20:39 (122858): Guest Log: [INFO] Mounting shared directory
2025-11-25 20:20:40 (122858): Guest Log: [INFO] Checking for init_data.xml
2025-11-25 20:20:47 (122858): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-25 20:20:47 (122858): Guest Log: [INFO] Detected branch: prod
2025-11-25 20:20:48 (122858): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-25 20:20:48 (122858): Guest Log: Copying input files
2025-11-25 20:20:50 (122858): Guest Log: Copied input files into RunAtlas.
2025-11-25 20:20:50 (122858): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-25 20:20:50 (122858): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-25 20:20:50 (122858): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-25 20:20:50 (122858): Guest Log: Further information can be found at the LHC@home message board.
2025-11-25 20:21:27 (122858): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-25 20:21:28 (122858): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-25 20:21:28 (122858): Guest Log: 2.6.3.0 1588 0 30008 153295 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-25 20:21:29 (122858): Guest Log: copied the webapp to /var/www
2025-11-25 20:21:29 (122858): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-25 20:21:29 (122858): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-25 20:21:30 (122858): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-25 20:21:30 (122858): Guest Log:  *** Starting ATLAS job. (PandaID=6895352623 taskID=47556137) ***
2025-11-25 21:59:20 (122858): Status Report: Elapsed Time: '6000.000000'
2025-11-25 21:59:20 (122858): Status Report: CPU Time: '22080.100000'
2025-11-25 23:38:21 (122858): Status Report: Elapsed Time: '12000.000000'
2025-11-25 23:38:21 (122858): Status Report: CPU Time: '45797.030000'
2025-11-26 01:17:21 (122858): Status Report: Elapsed Time: '18000.000000'
2025-11-26 01:17:21 (122858): Status Report: CPU Time: '69518.790000'
2025-11-26 02:56:22 (122858): Status Report: Elapsed Time: '24000.000000'
2025-11-26 02:56:22 (122858): Status Report: CPU Time: '93232.920000'
2025-11-26 04:35:22 (122858): Status Report: Elapsed Time: '30000.000000'
2025-11-26 04:35:22 (122858): Status Report: CPU Time: '116959.850000'
2025-11-26 06:14:22 (122858): Status Report: Elapsed Time: '36000.000000'
2025-11-26 06:14:22 (122858): Status Report: CPU Time: '140687.150000'
2025-11-26 07:53:23 (122858): Status Report: Elapsed Time: '42000.000000'
2025-11-26 07:53:23 (122858): Status Report: CPU Time: '164415.830000'
2025-11-26 09:32:23 (122858): Status Report: Elapsed Time: '48000.000000'
2025-11-26 09:32:23 (122858): Status Report: CPU Time: '188144.000000'
2025-11-26 11:11:24 (122858): Status Report: Elapsed Time: '54000.000000'
2025-11-26 11:11:24 (122858): Status Report: CPU Time: '211871.940000'
2025-11-26 12:50:24 (122858): Status Report: Elapsed Time: '60000.000000'
2025-11-26 12:50:24 (122858): Status Report: CPU Time: '235601.750000'
2025-11-26 13:18:59 (122858): Guest Log:  *** Job finished ***
2025-11-26 13:18:59 (122858): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:43,044 | INFO     | end of generic workflow (traces error code: 0)
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:43,045 | INFO     | traces error code: 0
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:43,045 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,314 | INFO     | PID=6003 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,314 | INFO     | found 0 job(s) in 20 queues
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,315 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,315 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,315 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,315 | CRITICAL | thread 'MainThread' is not alive
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,315 | INFO     | [monitor] control thread has ended
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,493 [wrapper] ==== pilot stdout END ====
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,506 [wrapper] ==== wrapper stdout RESUME ====
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,518 [wrapper] pilotpid: 6003
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,529 [wrapper] Pilot exit status: 0
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,568 [wrapper] pandaids: 6895352623
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,644 [wrapper] cleanup supervisor_pilot 17038 6004
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,657 [wrapper] Test setup, not cleaning
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,671 [wrapper] apfmon messages muted
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,682 [wrapper] ==== wrapper stdout END ====
2025-11-26 13:18:59 (122858): Guest Log: 2025-11-26 12:18:55,694 [wrapper] ==== wrapper stderr END ====
2025-11-26 13:18:59 (122858): Guest Log:  *** Error codes and diagnostics ***
2025-11-26 13:18:59 (122858): Guest Log:     "exeErrorCode": 0,
2025-11-26 13:18:59 (122858): Guest Log:     "exeErrorDiag": "",
2025-11-26 13:18:59 (122858): Guest Log:     "pilotErrorCode": 0,
2025-11-26 13:18:59 (122858): Guest Log:     "pilotErrorDiag": "",
2025-11-26 13:18:59 (122858): Guest Log:  *** Listing of results directory ***
2025-11-26 13:18:59 (122858): Guest Log: total 921496
2025-11-26 13:18:59 (122858): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 23 03:01 pilot3.tar.gz
2025-11-26 13:18:59 (122858): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 23 03:23 runpilot2-wrapper.sh
2025-11-26 13:18:59 (122858): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 23 03:23 queuedata.json
2025-11-26 13:18:59 (122858): Guest Log: -rw-r--r--. 1 atlas atlas      5962 Nov 25 19:20 init_data.xml
2025-11-26 13:18:59 (122858): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Nov 25 19:20 start_atlas.sh
2025-11-26 13:18:59 (122858): Guest Log: -rw-r--r--. 1 atlas atlas    590097 Nov 25 19:20 input.tar.gz
2025-11-26 13:18:59 (122858): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 25 19:20 EVNT.47483658._000597.pool.root.1 -> /data/./ATLAS.root_0
2025-11-26 13:18:59 (122858): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 25 19:21 pandaJob.out
2025-11-26 13:18:59 (122858): Guest Log: -rw-------. 1 atlas atlas    991893 Nov 25 19:22 agis_schedconf.cvmfs.json
2025-11-26 13:18:59 (122858): Guest Log: drwx------. 5 atlas atlas      4096 Nov 25 19:22 pilot3
2025-11-26 13:18:59 (122858): Guest Log: -rw-------. 1 atlas atlas 921218487 Nov 26 12:17 HITS.47556137._005927.pool.root.1
2025-11-26 13:18:59 (122858): Guest Log: -rw-------. 1 atlas atlas      1038 Nov 26 12:17 memory_monitor_summary.json
2025-11-26 13:18:59 (122858): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 26 12:18 agis_ddmendpoints.agis.ALL.json
2025-11-26 13:18:59 (122858): Guest Log: -rw-------. 1 atlas atlas   1691617 Nov 26 12:18 log.47556137._005927.job.log.tgz.1
2025-11-26 13:18:59 (122858): Guest Log: -rw-------. 1 atlas atlas        95 Nov 26 12:18 pilot_heartbeat.json
2025-11-26 13:18:59 (122858): Guest Log: -rw-------. 1 atlas atlas      8611 Nov 26 12:18 heartbeat.json
2025-11-26 13:18:59 (122858): Guest Log: -rw-------. 1 atlas atlas       814 Nov 26 12:18 pilotlog.txt
2025-11-26 13:18:59 (122858): Guest Log: -rw-------. 1 atlas atlas   7585813 Nov 26 12:18 log.47556137._005927.job.log.1
2025-11-26 13:18:59 (122858): Guest Log: -rw-------. 1 atlas atlas       353 Nov 26 12:18 output.list
2025-11-26 13:18:59 (122858): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 26 12:18 runtime_log
2025-11-26 13:18:59 (122858): Guest Log: -rw-------. 1 atlas atlas   9297920 Nov 26 12:18 result.tar.gz
2025-11-26 13:18:59 (122858): Guest Log: -rw-------. 1 atlas atlas       655 Nov 26 12:18 YSoNDmjsFh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSaKKDmes3oKn.diag
2025-11-26 13:18:59 (122858): Guest Log: -rw-r--r--. 1 atlas atlas      8716 Nov 26 12:18 runtime_log.err
2025-11-26 13:18:59 (122858): Guest Log: Looking for outputfile HITS.47556137._005927.pool.root.1
2025-11-26 13:18:59 (122858): Guest Log: HITS file was successfully produced
2025-11-26 13:18:59 (122858): Guest Log: -rw-------. 1 atlas atlas 921218487 Nov 26 12:17 /home/atlas/RunAtlas/HITS.47556137._005927.pool.root.1
2025-11-26 13:19:00 (122858): Guest Log: Successfully finished the ATLAS job!
2025-11-26 13:19:00 (122858): Guest Log: Copying the results back to the shared directory!
2025-11-26 13:19:00 (122858): Guest Log:  *** Contents of shared directory: ***
2025-11-26 13:19:00 (122858): Guest Log: total 410924
2025-11-26 13:19:00 (122858): Guest Log: -rw-r--r--. 1 root root 410865552 Nov 25 19:20 ATLAS.root_0
2025-11-26 13:19:00 (122858): Guest Log: -rw-r--r--. 1 root root      5962 Nov 25 19:20 init_data.xml
2025-11-26 13:19:00 (122858): Guest Log: -rw-r--r--. 1 root root    590097 Nov 25 19:20 input.tar.gz
2025-11-26 13:19:00 (122858): Guest Log: -rw-r--r--. 1 root root   9297920 Nov 26 12:18 result.tar.gz
2025-11-26 13:19:00 (122858): Guest Log: -rw-r--r--. 1 root root     15847 Nov 25 19:20 start_atlas.sh
2025-11-26 13:19:00 (122858): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-26 13:19:00 (122858): VM Completion File Detected.
2025-11-26 13:19:00 (122858): Powering off VM.
2025-11-26 13:19:00 (122858): Successfully stopped VM.
2025-11-26 13:19:00 (122858): Deregistering VM. (boinc_ba2f7584b2b97518, slot#0)
2025-11-26 13:19:00 (122858): Removing network bandwidth throttle group from VM.
2025-11-26 13:19:00 (122858): Removing VM from VirtualBox.
2025-11-26 13:19:05 (122858): called boinc_finish(0)

</stderr_txt>
]]>

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