Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:02:20 (14431): wrapper (7.7.26015): starting
12:02:20 (14431): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 12:02:20] Arguments: --nthreads 8
[2025-11-23 12:02:20] Threads: 8
[2025-11-23 12:02:20] Checking for CVMFS
[2025-11-23 12:02:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 12:02:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 12:02:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 12:02:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 12:02:21] 2.11.2.0 2951 20522 81056 153215 2 81 13249506 20275201 1 130560 0 2963694 99.562 1473089 29959 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 12:02:21] CVMFS is ok
[2025-11-23 12:02:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 12:02:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 12:02:21] Further information can be found at the LHC@home message board.
[2025-11-23 12:02:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 12:02:21] Checking for apptainer binary...
[2025-11-23 12:02:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 12:02:21] Running /usr/bin/apptainer --version
[2025-11-23 12:02:21] apptainer version 1.3.2-1.el7
[2025-11-23 12:02:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 12:02:22] c-204-23.aglt2.org
[2025-11-23 12:02:22] apptainer works
[2025-11-23 12:02:22] Set ATHENA_PROC_NUMBER=8
[2025-11-23 12:02:22] Set ATHENA_CORE_NUMBER=8
[2025-11-23 12:02:22] Starting ATLAS job with PandaID=6895337481
[2025-11-23 12:02:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:46:57 (12841): wrapper (7.7.26015): starting
23:46:57 (12841): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 23:46:57] Arguments: --nthreads 8
[2025-11-23 23:46:57] Threads: 8
[2025-11-23 23:46:57] This job has been restarted, cleaning up previous attempt
[2025-11-23 23:46:57] Checking for CVMFS
[2025-11-23 23:46:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 23:46:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 23:46:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 23:46:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 23:46:58] 2.11.2.0 2951 21227 84404 153233 2 49 14102884 20275200 1 130560 0 3188735 99.592 1497775 30057 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 23:46:58] CVMFS is ok
[2025-11-23 23:46:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 23:46:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 23:46:58] Further information can be found at the LHC@home message board.
[2025-11-23 23:46:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 23:46:58] Checking for apptainer binary...
[2025-11-23 23:46:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 23:46:58] Running /usr/bin/apptainer --version
[2025-11-23 23:46:58] apptainer version 1.3.2-1.el7
[2025-11-23 23:46:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 23:46:59] c-204-23.aglt2.org
[2025-11-23 23:46:59] apptainer works
[2025-11-23 23:46:59] Set ATHENA_PROC_NUMBER=8
[2025-11-23 23:46:59] Set ATHENA_CORE_NUMBER=8
[2025-11-23 23:47:00] Starting ATLAS job with PandaID=6895337481
[2025-11-23 23:47:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 12:14:39]  *** The last 200 lines of the pilot log: ***
[2025-11-24 12:14:39] 2025-11-24 17:13:42,101 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 12:14:39] 2025-11-24 17:13:42,105 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-24 12:14:39] 2025-11-24 17:13:42,107 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895337481/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 12:14:39] 2025-11-24 17:13:42,108 | INFO     | extracted standard info from prmon json
[2025-11-24 12:14:39] 2025-11-24 17:13:42,108 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 12:14:39] 2025-11-24 17:13:42,108 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 12:14:39] 2025-11-24 17:13:42,122 | INFO     | fitting pss+swap vs Time
[2025-11-24 12:14:39] 2025-11-24 17:13:42,123 | INFO     | sum of square deviations: 122620436332.06543
[2025-11-24 12:14:39] 2025-11-24 17:13:42,134 | INFO     | sum of deviations: 795662244563.1094
[2025-11-24 12:14:39] 2025-11-24 17:13:42,134 | INFO     | mean x: 1763982028.0899184
[2025-11-24 12:14:39] 2025-11-24 17:13:42,134 | INFO     | mean y: 3159973.64986376
[2025-11-24 12:14:39] 2025-11-24 17:13:42,134 | INFO     | intersect: -11443006275.817184
[2025-11-24 12:14:39] 2025-11-24 17:13:42,135 | INFO     | chi2: 7.382345798629032
[2025-11-24 12:14:39] 2025-11-24 17:13:42,136 | INFO     | sum of square deviations: 120131712427.81332
[2025-11-24 12:14:39] 2025-11-24 17:13:42,147 | INFO     | sum of deviations: 1099817987766.692
[2025-11-24 12:14:39] 2025-11-24 17:13:42,147 | INFO     | mean x: 1763981875.5939643
[2025-11-24 12:14:39] 2025-11-24 17:13:42,148 | INFO     | mean y: 3178613.5665294924
[2025-11-24 12:14:39] 2025-11-24 17:13:42,148 | INFO     | intersect: -16146254018.873821
[2025-11-24 12:14:39] 2025-11-24 17:13:42,148 | INFO     | chi2: 3.4881336186156586
[2025-11-24 12:14:39] 2025-11-24 17:13:42,149 | INFO     | current chi2=3.4881336186156586 (change=52.75033554695533 %)
[2025-11-24 12:14:39] 2025-11-24 17:13:42,149 | INFO     | sum of square deviations: 117676896136.03838
[2025-11-24 12:14:39] 2025-11-24 17:13:42,160 | INFO     | sum of deviations: 1228614550792.5947
[2025-11-24 12:14:39] 2025-11-24 17:13:42,160 | INFO     | mean x: 1763981723.0980663
[2025-11-24 12:14:39] 2025-11-24 17:13:42,160 | INFO     | mean y: 3186614.7099447516
[2025-11-24 12:14:39] 2025-11-24 17:13:42,161 | INFO     | intersect: -18413798226.775517
[2025-11-24 12:14:39] 2025-11-24 17:13:42,161 | INFO     | chi2: 2.6734675850763403
[2025-11-24 12:14:39] 2025-11-24 17:13:42,161 | INFO     | current chi2=2.6734675850763403 (change=23.355356262488485 %)
[2025-11-24 12:14:39] 2025-11-24 17:13:42,162 | INFO     | right removable region: 723
[2025-11-24 12:14:39] 2025-11-24 17:13:42,162 | INFO     | sum of square deviations: 120131448297.81328
[2025-11-24 12:14:39] 2025-11-24 17:13:42,173 | INFO     | sum of deviations: 565882438440.625
[2025-11-24 12:14:39] 2025-11-24 17:13:42,174 | INFO     | mean x: 1763982180.5939643
[2025-11-24 12:14:39] 2025-11-24 17:13:42,174 | INFO     | mean y: 3174028.596707819
[2025-11-24 12:14:39] 2025-11-24 17:13:42,174 | INFO     | intersect: -8306111773.449963
[2025-11-24 12:14:39] 2025-11-24 17:13:42,175 | INFO     | chi2: 4.926461870248188
[2025-11-24 12:14:39] 2025-11-24 17:13:42,175 | INFO     | current chi2=4.926461870248188 (change=33.26698579788722 %)
[2025-11-24 12:14:39] 2025-11-24 17:13:42,176 | INFO     | sum of square deviations: 117676456570.4241
[2025-11-24 12:14:39] 2025-11-24 17:13:42,187 | INFO     | sum of deviations: 523410972654.86707
[2025-11-24 12:14:39] 2025-11-24 17:13:42,187 | INFO     | mean x: 1763982333.0953038
[2025-11-24 12:14:39] 2025-11-24 17:13:42,187 | INFO     | mean y: 3176665.784530387
[2025-11-24 12:14:39] 2025-11-24 17:13:42,187 | INFO     | intersect: -7842808296.881883
[2025-11-24 12:14:39] 2025-11-24 17:13:42,188 | INFO     | chi2: 4.894939329488044
[2025-11-24 12:14:39] 2025-11-24 17:13:42,188 | INFO     | current chi2=4.894939329488044 (change=0.6398616611754266 %)
[2025-11-24 12:14:39] 2025-11-24 17:13:42,188 | INFO     | left removable region: 20
[2025-11-24 12:14:39] 2025-11-24 17:13:42,189 | INFO     | sum of square deviations: 107731027666.27295
[2025-11-24 12:14:39] 2025-11-24 17:13:42,199 | INFO     | sum of deviations: 903822540454.0211
[2025-11-24 12:14:39] 2025-11-24 17:13:42,199 | INFO     | mean x: 1763982302.6031294
[2025-11-24 12:14:39] 2025-11-24 17:13:42,200 | INFO     | mean y: 3208082.172119488
[2025-11-24 12:14:39] 2025-11-24 17:13:42,200 | INFO     | intersect: -14795935679.767746
[2025-11-24 12:14:39] 2025-11-24 17:13:42,201 | INFO     | chi2: 0.11112372166641118
[2025-11-24 12:14:39] 2025-11-24 17:13:42,201 | INFO     | current memory leak: 8.39 B/s (using 703 data points, chi2=0.11)
[2025-11-24 12:14:39] 2025-11-24 17:13:42,201 | INFO     | could have reported an average CPU frequency of 2176 MHz (28 samples)
[2025-11-24 12:14:39] 2025-11-24 17:13:42,201 | INFO     | ..............................
[2025-11-24 12:14:39] 2025-11-24 17:13:42,202 | INFO     | . Timing measurements:
[2025-11-24 12:14:39] 2025-11-24 17:13:42,202 | INFO     | . get job = 0 s
[2025-11-24 12:14:39] 2025-11-24 17:13:42,202 | INFO     | . initial setup = 2 s
[2025-11-24 12:14:39] 2025-11-24 17:13:42,202 | INFO     | . payload setup = 9 s
[2025-11-24 12:14:39] 2025-11-24 17:13:42,202 | INFO     | . stage-in = 0 s
[2025-11-24 12:14:39] 2025-11-24 17:13:42,202 | INFO     | . payload execution = 44738 s
[2025-11-24 12:14:39] 2025-11-24 17:13:42,202 | INFO     | . stage-out = 3 s
[2025-11-24 12:14:39] 2025-11-24 17:13:42,202 | INFO     | . log creation = 0 s
[2025-11-24 12:14:39] 2025-11-24 17:13:42,202 | INFO     | ..............................
[2025-11-24 12:14:39] 2025-11-24 17:13:42,420 | INFO     | time since job start (44784s) is within the limit (172800.0s)
[2025-11-24 12:14:39] 2025-11-24 17:13:42,644 | INFO     | 
[2025-11-24 12:14:39] 2025-11-24 17:13:42,644 | INFO     | job summary report
[2025-11-24 12:14:39] 2025-11-24 17:13:42,645 | INFO     | --------------------------------------------------
[2025-11-24 12:14:39] 2025-11-24 17:13:42,645 | INFO     | PanDA job id: 6895337481
[2025-11-24 12:14:39] 2025-11-24 17:13:42,645 | INFO     | task id: 47556137
[2025-11-24 12:14:39] 2025-11-24 17:13:42,645 | INFO     | errors: (none)
[2025-11-24 12:14:39] 2025-11-24 17:13:42,645 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 12:14:39] 2025-11-24 17:13:42,646 | INFO     | pilot state: finished 
[2025-11-24 12:14:39] 2025-11-24 17:13:42,646 | INFO     | transexitcode: 0
[2025-11-24 12:14:39] 2025-11-24 17:13:42,646 | INFO     | exeerrorcode: 0
[2025-11-24 12:14:39] 2025-11-24 17:13:42,646 | INFO     | exeerrordiag: 
[2025-11-24 12:14:39] 2025-11-24 17:13:42,646 | INFO     | exitcode: 0
[2025-11-24 12:14:39] 2025-11-24 17:13:42,646 | INFO     | exitmsg: OK
[2025-11-24 12:14:39] 2025-11-24 17:13:42,647 | INFO     | cpuconsumptiontime: 346758 s
[2025-11-24 12:14:39] 2025-11-24 17:13:42,647 | INFO     | nevents: 1000
[2025-11-24 12:14:39] 2025-11-24 17:13:42,647 | INFO     | neventsw: 0
[2025-11-24 12:14:39] 2025-11-24 17:13:42,647 | INFO     | pid: 23386
[2025-11-24 12:14:39] 2025-11-24 17:13:42,647 | INFO     | pgrp: 23386
[2025-11-24 12:14:39] 2025-11-24 17:13:42,647 | INFO     | corecount: 8
[2025-11-24 12:14:39] 2025-11-24 17:13:42,648 | INFO     | event service: False
[2025-11-24 12:14:39] 2025-11-24 17:13:42,648 | INFO     | sizes: {0: 2298534, 1: 2298733, 7: 2298995, 11: 2299023, 44751: 2344865, 44756: 2354650, 44758: 2354834, 44767: 2355080}
[2025-11-24 12:14:39] 2025-11-24 17:13:42,648 | INFO     | --------------------------------------------------
[2025-11-24 12:14:39] 2025-11-24 17:13:42,648 | INFO     | 
[2025-11-24 12:14:39] 2025-11-24 17:13:42,648 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 12:14:39] 2025-11-24 17:13:42,676 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,677 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,677 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,677 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,677 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,677 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,678 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,678 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,678 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,678 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,678 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,678 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,679 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,679 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,679 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,679 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,679 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,679 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 12:14:39] 2025-11-24 17:13:42,680 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,680 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 12:14:39] 2025-11-24 17:13:42,680 | INFO     | job 6895337481 has completed (purged errors)
[2025-11-24 12:14:39] 2025-11-24 17:13:42,680 | INFO     | overall cleanup function is called
[2025-11-24 12:14:39] 2025-11-24 17:13:43,540 | INFO     | PID=17020 has CPU usage=14.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 12:14:39] 2025-11-24 17:13:43,696 | INFO     | --- collectZombieJob: --- 10, [23386]
[2025-11-24 12:14:39] 2025-11-24 17:13:43,696 | INFO     | zombie collector waiting for pid 23386
[2025-11-24 12:14:39] 2025-11-24 17:13:43,696 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 12:14:39] 2025-11-24 17:13:43,696 | INFO     | collected zombie processes
[2025-11-24 12:14:39] 2025-11-24 17:13:43,697 | INFO     | will attempt to kill all subprocesses of pid=23386
[2025-11-24 12:14:39] 2025-11-24 17:13:43,782 | INFO     | process IDs to be killed: [23386] (in reverse order)
[2025-11-24 12:14:39] 2025-11-24 17:13:43,840 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 12:14:39] 2025-11-24 17:13:43,841 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 12:14:39] 2025-11-24 17:13:43,845 | INFO     | did not find any defunct processes belonging to 23386
[2025-11-24 12:14:39] 2025-11-24 17:13:43,849 | INFO     | did not find any defunct processes belonging to 23386
[2025-11-24 12:14:39] 2025-11-24 17:13:43,852 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 12:14:39] 2025-11-24 17:13:43,852 | INFO     | ready for new job
[2025-11-24 12:14:39] 2025-11-24 17:13:43,852 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 12:14:39] 2025-11-24 17:13:43,856 | INFO     | ***************************************
[2025-11-24 12:14:39] 2025-11-24 17:13:43,857 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 12:14:39] 2025-11-24 17:13:43,857 | INFO     | ***************************************
[2025-11-24 12:14:39] 2025-11-24 17:13:43,857 | INFO     | 
[2025-11-24 12:14:39] 2025-11-24 17:13:43,857 | INFO     | architecture information:
[2025-11-24 12:14:39] 2025-11-24 17:13:43,858 | INFO     | executing command: cat /etc/os-release
[2025-11-24 12:14:39] 2025-11-24 17:13:43,878 | INFO     | cat /etc/os-release:
[2025-11-24 12:14:39] NAME="CentOS Linux"
[2025-11-24 12:14:39] VERSION="7 (Core)"
[2025-11-24 12:14:39] ID="centos"
[2025-11-24 12:14:39] ID_LIKE="rhel fedora"
[2025-11-24 12:14:39] VERSION_ID="7"
[2025-11-24 12:14:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 12:14:39] ANSI_COLOR="0;31"
[2025-11-24 12:14:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 12:14:39] HOME_URL="https://www.centos.org/"
[2025-11-24 12:14:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 12:14:39] 
[2025-11-24 12:14:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 12:14:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 12:14:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 12:14:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 12:14:39] 
[2025-11-24 12:14:39] 2025-11-24 17:13:43,879 | INFO     | ***************************************
[2025-11-24 12:14:39] 2025-11-24 17:13:44,382 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 12:14:39] 2025-11-24 17:13:44,403 | INFO     | sufficient remaining disk space (17032019968 B)
[2025-11-24 12:14:39] 2025-11-24 17:13:44,404 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 12:14:39] 2025-11-24 17:13:44,404 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 12:14:39] 2025-11-24 17:13:44,404 | INFO     | update_server=False
[2025-11-24 12:14:39] 2025-11-24 17:13:44,405 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 12:14:39] 2025-11-24 17:13:44,405 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 12:14:39] 2025-11-24 17:13:44,406 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-24 12:14:39] 2025-11-24 17:13:44,406 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 12:14:39] 2025-11-24 17:13:44,406 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 12:14:39] 2025-11-24 17:13:44,407 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 12:14:39] 2025-11-24 17:13:44,407 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 12:14:39] 2025-11-24 17:13:44,530 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 12:14:39] 2025-11-24 17:13:44,530 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 12:14:39] 2025-11-24 17:13:44,530 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:14:39] 2025-11-24 17:13:44,530 | INFO     | will abort loop
[2025-11-24 12:14:39] 2025-11-24 17:13:44,599 | INFO     | all payload control threads have been joined
[2025-11-24 12:14:39] 2025-11-24 17:13:44,600 | INFO     | all job control threads have been joined
[2025-11-24 12:14:39] 2025-11-24 17:13:44,783 | INFO     | all data control threads have been joined
[2025-11-24 12:14:39] 2025-11-24 17:13:45,410 | INFO     | [job] retrieve thread has finished
[2025-11-24 12:14:39] 2025-11-24 17:13:45,423 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 12:14:39] 2025-11-24 17:13:45,536 | INFO     | [job] job monitor thread has finished
[2025-11-24 12:14:39] 2025-11-24 17:13:45,605 | INFO     | [payload] control thread has finished
[2025-11-24 12:14:39] 2025-11-24 17:13:45,606 | INFO     | [job] control thread has finished
[2025-11-24 12:14:39] 2025-11-24 17:13:45,789 | INFO     | [data] control thread has finished
[2025-11-24 12:14:39] 2025-11-24 17:13:45,900 | INFO     | [job] validate thread has finished
[2025-11-24 12:14:39] 2025-11-24 17:13:46,160 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 12:14:39] 2025-11-24 17:13:46,229 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 12:14:39] 2025-11-24 17:13:46,409 | INFO     | [data] copytool_out thread has finished
[2025-11-24 12:14:39] 2025-11-24 17:13:46,740 | INFO     | [payload] validate_post thread has finished
[2025-11-24 12:14:39] 2025-11-24 17:13:46,803 | INFO     | [payload] failed_post thread has finished
[2025-11-24 12:14:39] 2025-11-24 17:13:46,811 | INFO     | [data] copytool_in thread has finished
[2025-11-24 12:14:39] 2025-11-24 17:13:46,813 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 12:14:39] 2025-11-24 17:13:47,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:14:39] 2025-11-24 17:13:48,312 | INFO     | [job] queue monitor thread has finished
[2025-11-24 12:14:39] 2025-11-24 17:13:48,411 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 12:14:39] 2025-11-24 17:14:32,131 | INFO     | [monitor] cgroup control has ended
[2025-11-24 12:14:39] 2025-11-24 17:14:33,914 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140666597156672)>', '<ExcThread(monitor, started 140665782515456)>']
[2025-11-24 12:14:39] 2025-11-24 17:14:34,627 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 12:14:39] 2025-11-24 17:14:34,627 | INFO     | [monitor] control thread has ended
[2025-11-24 12:14:39] 2025-11-24 17:14:38,938 | INFO     | all workflow threads have been joined
[2025-11-24 12:14:39] 2025-11-24 17:14:38,938 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 12:14:39] 2025-11-24 17:14:38,939 | INFO     | traces error code: 0
[2025-11-24 12:14:39] 2025-11-24 17:14:38,939 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 12:14:39] 2025-11-24 17:14:39,068 [wrapper] ==== pilot stdout END ====
[2025-11-24 12:14:39] 2025-11-24 17:14:39,074 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 12:14:39] 2025-11-24 17:14:39,079 [wrapper] pilotpid: 17020
[2025-11-24 12:14:39] 2025-11-24 17:14:39,083 [wrapper] Pilot exit status: 0
[2025-11-24 12:14:39] 2025-11-24 17:14:39,099 [wrapper] pandaids: 6895337481 6895337481
[2025-11-24 12:14:39] 2025-11-24 17:14:39,155 [wrapper] cleanup supervisor_pilot 12440 17021
[2025-11-24 12:14:39] 2025-11-24 17:14:39,160 [wrapper] Test setup, not cleaning
[2025-11-24 12:14:39] 2025-11-24 17:14:39,164 [wrapper] apfmon messages muted
[2025-11-24 12:14:39] 2025-11-24 17:14:39,169 [wrapper] ==== wrapper stdout END ====
[2025-11-24 12:14:39] 2025-11-24 17:14:39,174 [wrapper] ==== wrapper stderr END ====
[2025-11-24 12:14:39]  *** Error codes and diagnostics ***
[2025-11-24 12:14:39]     "exeErrorCode": 0,
[2025-11-24 12:14:39]     "exeErrorDiag": "",
[2025-11-24 12:14:39]     "pilotErrorCode": 0,
[2025-11-24 12:14:39]     "pilotErrorDiag": "",
[2025-11-24 12:14:39]  *** Listing of results directory ***
[2025-11-24 12:14:39] total 1714416
[2025-11-24 12:14:39] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 12:14:39] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 02:52 pilot3.tar.gz
[2025-11-24 12:14:39] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 03:03 queuedata.json
[2025-11-24 12:14:39] -rwx------ 1 boincer umatlas     36292 Nov 22 03:04 runpilot2-wrapper.sh
[2025-11-24 12:14:39] -rw-r--r-- 1 boincer umatlas       100 Nov 23 12:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 12:14:39] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 12:02 run_atlas
[2025-11-24 12:14:39] -rw-r--r-- 1 boincer umatlas       105 Nov 23 12:02 job.xml
[2025-11-24 12:14:39] -rw-r--r-- 3 boincer umatlas 409627589 Nov 23 12:02 EVNT.47483658._000308.pool.root.1
[2025-11-24 12:14:39] -rw-r--r-- 3 boincer umatlas 409627589 Nov 23 12:02 ATLAS.root_0
[2025-11-24 12:14:39] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 12:02 start_atlas.sh
[2025-11-24 12:14:39] drwxrwx--x 2 boincer umatlas      4096 Nov 23 12:02 shared
[2025-11-24 12:14:39] -rw-r--r-- 2 boincer umatlas    590102 Nov 23 12:02 input.tar.gz
[2025-11-24 12:14:39] -rw-r--r-- 1 boincer umatlas         0 Nov 23 12:02 boinc_lockfile
[2025-11-24 12:14:39] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 23:46 pandaJob.out
[2025-11-24 12:14:39] -rw------- 1 boincer umatlas        57 Nov 23 23:47 setup.sh.local
[2025-11-24 12:14:39] -rw------- 1 boincer umatlas    989786 Nov 23 23:47 agis_schedconf.cvmfs.json
[2025-11-24 12:14:39] -rw-r--r-- 1 boincer umatlas       533 Nov 24 12:02 boinc_task_state.xml
[2025-11-24 12:14:39] -rw-r--r-- 1 boincer umatlas      5912 Nov 24 12:09 init_data.xml
[2025-11-24 12:14:39] -rw------- 1 boincer umatlas 916100350 Nov 24 12:12 HITS.47556137._003046.pool.root.1
[2025-11-24 12:14:39] -rw------- 1 boincer umatlas      1062 Nov 24 12:13 memory_monitor_summary.json
[2025-11-24 12:14:39] -rw------- 1 boincer umatlas   1516227 Nov 24 12:13 agis_ddmendpoints.agis.ALL.json
[2025-11-24 12:14:39] -rw------- 1 boincer umatlas   1982663 Nov 24 12:13 log.47556137._003046.job.log.tgz.1
[2025-11-24 12:14:39] -rw------- 1 boincer umatlas        96 Nov 24 12:13 pilot_heartbeat.json
[2025-11-24 12:14:39] -rw------- 1 boincer umatlas      8657 Nov 24 12:13 heartbeat.json
[2025-11-24 12:14:39] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 12:14 boinc_mmap_file
[2025-11-24 12:14:39] -rw-r--r-- 1 boincer umatlas        29 Nov 24 12:14 wrapper_checkpoint.txt
[2025-11-24 12:14:39] -rw------- 1 boincer umatlas      4738 Nov 24 12:14 pilotlog.txt
[2025-11-24 12:14:39] -rw------- 1 boincer umatlas   6154132 Nov 24 12:14 log.47556137._003046.job.log.1
[2025-11-24 12:14:39] -rw------- 1 boincer umatlas       353 Nov 24 12:14 output.list
[2025-11-24 12:14:39] -rw-r--r-- 1 boincer umatlas       620 Nov 24 12:14 runtime_log
[2025-11-24 12:14:39] -rw------- 1 boincer umatlas   8161280 Nov 24 12:14 result.tar.gz
[2025-11-24 12:14:39] -rw------- 1 boincer umatlas       793 Nov 24 12:14 ycaKDmRmxg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmp2JKDmCJ8ySo.diag
[2025-11-24 12:14:39] -rw-r--r-- 1 boincer umatlas      9428 Nov 24 12:14 runtime_log.err
[2025-11-24 12:14:39] -rw-r--r-- 1 boincer umatlas     23461 Nov 24 12:14 stderr.txt
[2025-11-24 12:14:39] HITS file was successfully produced:
[2025-11-24 12:14:39] -rw------- 1 boincer umatlas 916100350 Nov 24 12:12 shared/HITS.pool.root.1
[2025-11-24 12:14:39]  *** Contents of shared directory: ***
[2025-11-24 12:14:39] total 1303236
[2025-11-24 12:14:39] -rw-r--r-- 3 boincer umatlas 409627589 Nov 23 12:02 ATLAS.root_0
[2025-11-24 12:14:39] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 12:02 start_atlas.sh
[2025-11-24 12:14:39] -rw-r--r-- 2 boincer umatlas    590102 Nov 23 12:02 input.tar.gz
[2025-11-24 12:14:39] -rw------- 1 boincer umatlas 916100350 Nov 24 12:12 HITS.pool.root.1
[2025-11-24 12:14:39] -rw------- 1 boincer umatlas   8161280 Nov 24 12:14 result.tar.gz
12:14:40 (12841): run_atlas exited; CPU time 344548.374451
12:14:40 (12841): called boinc_finish(0)

</stderr_txt>
]]>

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