Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-25 10:04:26 (316546): vboxwrapper version 26210
2025-11-25 10:04:26 (316546): BOINC client version: 7.24.1
2025-11-25 10:04:26 (316546): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2025-11-25 10:04:26 (316546): Successfully copied 'init_data.xml' to the shared directory.
2025-11-25 10:04:26 (316546): Create VM. (boinc_090f40cfb956d9e0, slot#0)
2025-11-25 10:04:26 (316546): Setting Memory Size for VM. (4600MB)
2025-11-25 10:04:26 (316546): Setting CPU Count for VM. (6)
2025-11-25 10:04:26 (316546): Setting Chipset Options for VM.
2025-11-25 10:04:26 (316546): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-25 10:04:26 (316546): Setting Boot Options for VM.
2025-11-25 10:04:26 (316546): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-25 10:04:26 (316546): Enabling VM Network Access.
2025-11-25 10:04:26 (316546): Disabling USB Support for VM.
2025-11-25 10:04:26 (316546): Disabling COM Port Support for VM.
2025-11-25 10:04:26 (316546): Disabling LPT Port Support for VM.
2025-11-25 10:04:26 (316546): Disabling Audio Support for VM.
2025-11-25 10:04:26 (316546): Disabling Clipboard Support for VM.
2025-11-25 10:04:26 (316546): Disabling Drag and Drop Support for VM.
2025-11-25 10:04:27 (316546): Adding storage controller(s) to VM.
2025-11-25 10:04:27 (316546): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-25 10:04:27 (316546): Adding VirtualBox Guest Additions to VM.
2025-11-25 10:04:27 (316546): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-25 10:04:27 (316546): forwarding host port 38651 to guest port 80
2025-11-25 10:04:27 (316546): Enabling remote desktop for VM.
2025-11-25 10:04:27 (316546): Required extension pack not installed, remote desktop not enabled.
2025-11-25 10:04:27 (316546): Enabling shared directory for VM.
2025-11-25 10:04:27 (316546): Starting VM using VBoxManage interface. (boinc_090f40cfb956d9e0, slot#0)
2025-11-25 10:04:28 (316546): Successfully started VM. (PID = '317036')
2025-11-25 10:04:28 (316546): Reporting VM Process ID to BOINC.
2025-11-25 10:04:28 (316546): Guest Log: BIOS: VirtualBox 7.0.16
2025-11-25 10:04:28 (316546): Guest Log: CPUID EDX: 0x178bfbff
2025-11-25 10:04:28 (316546): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-25 10:04:28 (316546): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-25 10:04:28 (316546): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-25 10:04:28 (316546): Detected: Web Application Enabled (http://localhost:38651)
2025-11-25 10:04:29 (316546): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 10:04:47 (316546): Preference change detected
2025-11-25 10:04:47 (316546): Setting CPU throttle for VM. (100%)
2025-11-25 10:04:47 (316546): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-25 10:04:48 (316546): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 10:04:49 (316546): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-25 10:04:49 (316546): Guest Log: BIOS: Booting from Hard Disk...
2025-11-25 10:04:52 (316546): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-25 10:04:52 (316546): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-25 10:04:52 (316546): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-25 10:05:01 (316546): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-25 10:05:01 (316546): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-25 10:05:05 (316546): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-25 10:05:05 (316546): Guest Log: 00:00:00.000131 main     Log opened 2025-11-25T16:04:44.297604000Z
2025-11-25 10:05:05 (316546): Guest Log: 00:00:00.000196 main     OS Product: Linux
2025-11-25 10:05:05 (316546): Guest Log: 00:00:00.000208 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-25 10:05:05 (316546): Guest Log: 00:00:00.000218 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-25 10:05:05 (316546): Guest Log: 00:00:00.000227 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-25 10:05:05 (316546): Guest Log: 00:00:00.000228 main     Process ID: 1338
2025-11-25 10:05:05 (316546): Guest Log: 00:00:00.000228 main     Package type: LINUX_64BITS_GENERIC
2025-11-25 10:05:05 (316546): Guest Log: 00:00:00.000590 main     5.2.32 r132073 started. Verbose level = 0
2025-11-25 10:05:05 (316546): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-25 10:05:05 (316546): Guest Log: [INFO] Mounting shared directory
2025-11-25 10:05:05 (316546): Guest Log: [INFO] Checking for init_data.xml
2025-11-25 10:05:09 (316546): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-25 10:05:09 (316546): Guest Log: [INFO] Detected branch: prod
2025-11-25 10:05:09 (316546): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-25 10:05:09 (316546): Guest Log: Copying input files
2025-11-25 10:05:10 (316546): Guest Log: Copied input files into RunAtlas.
2025-11-25 10:05:10 (316546): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-25 10:05:10 (316546): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-25 10:05:10 (316546): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-25 10:05:10 (316546): Guest Log: Further information can be found at the LHC@home message board.
2025-11-25 10:05:19 (316546): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-25 10:05:19 (316546): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-25 10:05:19 (316546): Guest Log: 2.6.3.0 1614 0 32196 153287 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-25 10:05:20 (316546): Guest Log: copied the webapp to /var/www
2025-11-25 10:05:20 (316546): Guest Log: ATHENA_PROC_NUMBER=6
2025-11-25 10:05:20 (316546): Guest Log: ATHENA_CORE_NUMBER=6
2025-11-25 10:05:20 (316546): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-25 10:05:20 (316546): Guest Log:  *** Starting ATLAS job. (PandaID=6895346074 taskID=47556137) ***
2025-11-25 11:43:48 (316546): Status Report: Elapsed Time: '6000.000000'
2025-11-25 11:43:48 (316546): Status Report: CPU Time: '33684.910000'
2025-11-25 11:43:48 (316546): Status Report: Network Bytes Sent (Total): '4111264.000000'
2025-11-25 11:43:48 (316546): Status Report: Network Bytes Received (Total): '372043356.000000'
2025-11-25 13:22:48 (316546): Status Report: Elapsed Time: '12000.000000'
2025-11-25 13:22:48 (316546): Status Report: CPU Time: '69230.970000'
2025-11-25 13:22:48 (316546): Status Report: Network Bytes Sent (Total): '4297005.000000'
2025-11-25 13:22:48 (316546): Status Report: Network Bytes Received (Total): '382002990.000000'
2025-11-25 15:01:49 (316546): Status Report: Elapsed Time: '18000.000000'
2025-11-25 15:01:49 (316546): Status Report: CPU Time: '104773.160000'
2025-11-25 15:01:49 (316546): Status Report: Network Bytes Sent (Total): '4464108.000000'
2025-11-25 15:01:49 (316546): Status Report: Network Bytes Received (Total): '391758724.000000'
2025-11-25 16:32:37 (316546): Guest Log:  *** Job finished ***
2025-11-25 16:32:37 (316546): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:14,505 | INFO     | all workflow threads have been joined
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:14,505 | INFO     | end of generic workflow (traces error code: 0)
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:14,506 | INFO     | traces error code: 0
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:14,506 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:26,599 | INFO     | PID=6031 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:26,600 | INFO     | found 0 job(s) in 20 queues
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:26,600 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:26,600 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:26,600 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:26,600 | INFO     | [monitor] control thread has ended
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:26,683 [wrapper] ==== pilot stdout END ====
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:26,686 [wrapper] ==== wrapper stdout RESUME ====
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:26,689 [wrapper] pilotpid: 6031
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:26,693 [wrapper] Pilot exit status: 0
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:26,704 [wrapper] pandaids: 6895346074
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:26,723 [wrapper] cleanup supervisor_pilot 27894 6032
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:26,727 [wrapper] Test setup, not cleaning
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:26,731 [wrapper] apfmon messages muted
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:26,734 [wrapper] ==== wrapper stdout END ====
2025-11-25 16:32:37 (316546): Guest Log: 2025-11-25 22:32:26,737 [wrapper] ==== wrapper stderr END ====
2025-11-25 16:32:37 (316546): Guest Log:  *** Error codes and diagnostics ***
2025-11-25 16:32:37 (316546): Guest Log:     "exeErrorCode": 0,
2025-11-25 16:32:37 (316546): Guest Log:     "exeErrorDiag": "",
2025-11-25 16:32:37 (316546): Guest Log:     "pilotErrorCode": 0,
2025-11-25 16:32:37 (316546): Guest Log:     "pilotErrorDiag": "",
2025-11-25 16:32:37 (316546): Guest Log:  *** Listing of results directory ***
2025-11-25 16:32:37 (316546): Guest Log: total 904136
2025-11-25 16:32:37 (316546): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 17:43 pilot3.tar.gz
2025-11-25 16:32:37 (316546): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 22 17:49 queuedata.json
2025-11-25 16:32:37 (316546): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 22 17:49 runpilot2-wrapper.sh
2025-11-25 16:32:37 (316546): Guest Log: -rw-r--r--. 1 atlas atlas    590103 Nov 25 16:04 input.tar.gz
2025-11-25 16:32:37 (316546): Guest Log: -rw-r--r--. 1 atlas atlas      7046 Nov 25 16:04 init_data.xml
2025-11-25 16:32:37 (316546): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Nov 25 16:04 start_atlas.sh
2025-11-25 16:32:37 (316546): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 25 16:04 EVNT.47483658._000453.pool.root.1 -> /data/./ATLAS.root_0
2025-11-25 16:32:37 (316546): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 25 16:04 pandaJob.out
2025-11-25 16:32:37 (316546): Guest Log: -rw-------. 1 atlas atlas    991909 Nov 25 16:05 agis_schedconf.cvmfs.json
2025-11-25 16:32:37 (316546): Guest Log: drwx------. 5 atlas atlas      4096 Nov 25 16:05 pilot3
2025-11-25 16:32:37 (316546): Guest Log: -rw-------. 1 atlas atlas 912985841 Nov 25 22:31 HITS.47556137._004488.pool.root.1
2025-11-25 16:32:37 (316546): Guest Log: -rw-------. 1 atlas atlas      1050 Nov 25 22:31 memory_monitor_summary.json
2025-11-25 16:32:37 (316546): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 25 22:31 agis_ddmendpoints.agis.ALL.json
2025-11-25 16:32:37 (316546): Guest Log: -rw-------. 1 atlas atlas   1464577 Nov 25 22:31 log.47556137._004488.job.log.tgz.1
2025-11-25 16:32:37 (316546): Guest Log: -rw-------. 1 atlas atlas        95 Nov 25 22:31 pilot_heartbeat.json
2025-11-25 16:32:37 (316546): Guest Log: -rw-------. 1 atlas atlas      8673 Nov 25 22:31 heartbeat.json
2025-11-25 16:32:37 (316546): Guest Log: -rw-------. 1 atlas atlas       744 Nov 25 22:32 pilotlog.txt
2025-11-25 16:32:37 (316546): Guest Log: -rw-------. 1 atlas atlas   3041133 Nov 25 22:32 log.47556137._004488.job.log.1
2025-11-25 16:32:37 (316546): Guest Log: -rw-------. 1 atlas atlas       353 Nov 25 22:32 output.list
2025-11-25 16:32:37 (316546): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 25 22:32 runtime_log
2025-11-25 16:32:37 (316546): Guest Log: -rw-------. 1 atlas atlas   4526080 Nov 25 22:32 result.tar.gz
2025-11-25 16:32:37 (316546): Guest Log: -rw-r--r--. 1 atlas atlas      8759 Nov 25 22:32 runtime_log.err
2025-11-25 16:32:37 (316546): Guest Log: -rw-------. 1 atlas atlas       664 Nov 25 22:32 N0JODmou6g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwJKKDmYq3Y0n.diag
2025-11-25 16:32:37 (316546): Guest Log: Looking for outputfile HITS.47556137._004488.pool.root.1
2025-11-25 16:32:37 (316546): Guest Log: HITS file was successfully produced
2025-11-25 16:32:37 (316546): Guest Log: -rw-------. 1 atlas atlas 912985841 Nov 25 22:31 /home/atlas/RunAtlas/HITS.47556137._004488.pool.root.1
2025-11-25 16:32:37 (316546): Guest Log: Successfully finished the ATLAS job!
2025-11-25 16:32:37 (316546): Guest Log: Copying the results back to the shared directory!
2025-11-25 16:32:37 (316546): Guest Log:  *** Contents of shared directory: ***
2025-11-25 16:32:37 (316546): Guest Log: total 405472
2025-11-25 16:32:37 (316546): Guest Log: -rw-r--r--. 1 root root 410053950 Nov 25 16:04 ATLAS.root_0
2025-11-25 16:32:37 (316546): Guest Log: -rw-r--r--. 1 root root      7046 Nov 25 16:04 init_data.xml
2025-11-25 16:32:37 (316546): Guest Log: -rw-r--r--. 1 root root    590103 Nov 25 16:04 input.tar.gz
2025-11-25 16:32:37 (316546): Guest Log: -rw-r--r--. 1 root root   4526080 Nov 25  2025 result.tar.gz
2025-11-25 16:32:37 (316546): Guest Log: -rw-r--r--. 1 root root     15847 Nov 25 16:04 start_atlas.sh
2025-11-25 16:32:37 (316546): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-25 16:32:37 (316546): VM Completion File Detected.
2025-11-25 16:32:37 (316546): Powering off VM.
2025-11-25 16:32:37 (316546): Successfully stopped VM.
2025-11-25 16:32:37 (316546): Deregistering VM. (boinc_090f40cfb956d9e0, slot#0)
2025-11-25 16:32:37 (316546): Removing network bandwidth throttle group from VM.
2025-11-25 16:32:37 (316546): Removing VM from VirtualBox.
2025-11-25 16:32:42 (316546): called boinc_finish(0)

</stderr_txt>
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