Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:06:14 (1822173): wrapper (7.7.26015): starting
16:06:14 (1822173): wrapper: running run_atlas (--nthreads 6)
[2025-11-24 16:06:14] Arguments: --nthreads 6
[2025-11-24 16:06:14] Threads: 6
[2025-11-24 16:06:14] Checking for CVMFS
[2025-11-24 16:06:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 16:06:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 16:06:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 16:06:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 16:06:15] 2.13.3.0 4195 7918 102792 153236 0 81 18148302 20971520 916 130560 0 6299390 99.912 542197 23 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-24 16:06:15] CVMFS is ok
[2025-11-24 16:06:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 16:06:15] Checking for apptainer binary...
[2025-11-24 16:06:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 16:06:15] Running /usr/bin/apptainer --version
[2025-11-24 16:06:15] apptainer version 1.4.4-1.el9
[2025-11-24 16:06:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 16:06:15] testio006
[2025-11-24 16:06:15] apptainer works
[2025-11-24 16:06:15] Set ATHENA_PROC_NUMBER=6
[2025-11-24 16:06:15] Set ATHENA_CORE_NUMBER=6
[2025-11-24 16:06:15] Starting ATLAS job with PandaID=6894283544
[2025-11-24 16:06:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:54:31]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:54:31] 2025-11-24 16:53:45,373 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:54:31] 2025-11-24 16:53:45,373 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:54:31] 2025-11-24 16:53:45,381 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:54:31] 2025-11-24 16:53:45,382 | INFO     | sum of square deviations: 59567001956.91538
[2025-11-25 01:54:31] 2025-11-24 16:53:45,388 | INFO     | sum of deviations: 521898794634.76324
[2025-11-25 01:54:31] 2025-11-24 16:53:45,388 | INFO     | mean x: 1763985580.0121317
[2025-11-25 01:54:31] 2025-11-24 16:53:45,388 | INFO     | mean y: 2649847.890814558
[2025-11-25 01:54:31] 2025-11-24 16:53:45,388 | INFO     | intersect: -15452584052.034487
[2025-11-25 01:54:31] 2025-11-24 16:53:45,389 | INFO     | chi2: 10.091928829343411
[2025-11-25 01:54:31] 2025-11-24 16:53:45,389 | INFO     | sum of square deviations: 58031849726.91431
[2025-11-25 01:54:31] 2025-11-24 16:53:45,395 | INFO     | sum of deviations: 692976907470.9778
[2025-11-25 01:54:31] 2025-11-24 16:53:45,395 | INFO     | mean x: 1763985427.5122378
[2025-11-25 01:54:31] 2025-11-24 16:53:45,395 | INFO     | mean y: 2666837.9318181816
[2025-11-25 01:54:31] 2025-11-24 16:53:45,396 | INFO     | intersect: -21061648225.842026
[2025-11-25 01:54:31] 2025-11-24 16:53:45,396 | INFO     | chi2: 7.100739547632786
[2025-11-25 01:54:31] 2025-11-24 16:53:45,396 | INFO     | current chi2=7.100739547632786 (change=29.639421088795316 %)
[2025-11-25 01:54:31] 2025-11-24 16:53:45,397 | INFO     | sum of square deviations: 56523302646.91342
[2025-11-25 01:54:31] 2025-11-24 16:53:45,402 | INFO     | sum of deviations: 832558247972.6656
[2025-11-25 01:54:31] 2025-11-24 16:53:45,402 | INFO     | mean x: 1763985275.0123458
[2025-11-25 01:54:31] 2025-11-24 16:53:45,403 | INFO     | mean y: 2680918.0476190476
[2025-11-25 01:54:31] 2025-11-24 16:53:45,403 | INFO     | intersect: -25979885939.16444
[2025-11-25 01:54:31] 2025-11-24 16:53:45,403 | INFO     | chi2: 4.646739382208658
[2025-11-25 01:54:31] 2025-11-24 16:53:45,403 | INFO     | current chi2=4.646739382208658 (change=34.5597828080067 %)
[2025-11-25 01:54:31] 2025-11-24 16:53:45,404 | INFO     | sum of square deviations: 55041128154.41297
[2025-11-25 01:54:31] 2025-11-24 16:53:45,410 | INFO     | sum of deviations: 820484877936.2104
[2025-11-25 01:54:31] 2025-11-24 16:53:45,410 | INFO     | mean x: 1763985122.5124555
[2025-11-25 01:54:31] 2025-11-24 16:53:45,410 | INFO     | mean y: 2679675.8985765125
[2025-11-25 01:54:31] 2025-11-24 16:53:45,410 | INFO     | intersect: -26292622881.59239
[2025-11-25 01:54:31] 2025-11-24 16:53:45,411 | INFO     | chi2: 4.643190009889234
[2025-11-25 01:54:31] 2025-11-24 16:53:45,411 | INFO     | current chi2=4.643190009889234 (change=0.07638414870034514 %)
[2025-11-25 01:54:31] 2025-11-24 16:53:45,411 | INFO     | right removable region: 561
[2025-11-25 01:54:31] 2025-11-24 16:53:45,411 | INFO     | sum of square deviations: 58031845456.91431
[2025-11-25 01:54:31] 2025-11-24 16:53:45,418 | INFO     | sum of deviations: 349431742000.0736
[2025-11-25 01:54:31] 2025-11-24 16:53:45,418 | INFO     | mean x: 1763985732.5122378
[2025-11-25 01:54:31] 2025-11-24 16:53:45,418 | INFO     | mean y: 2666968.9895104896
[2025-11-25 01:54:31] 2025-11-24 16:53:45,418 | INFO     | intersect: -10618959872.649834
[2025-11-25 01:54:31] 2025-11-24 16:53:45,419 | INFO     | chi2: 7.351049011265624
[2025-11-25 01:54:31] 2025-11-24 16:53:45,419 | INFO     | current chi2=7.351049011265624 (change=27.159127501061768 %)
[2025-11-25 01:54:31] 2025-11-24 16:53:45,419 | INFO     | sum of square deviations: 56523294106.913414
[2025-11-25 01:54:31] 2025-11-24 16:53:45,425 | INFO     | sum of deviations: 213007688711.86404
[2025-11-25 01:54:31] 2025-11-24 16:53:45,425 | INFO     | mean x: 1763985885.0123458
[2025-11-25 01:54:31] 2025-11-24 16:53:45,426 | INFO     | mean y: 2680754.733686067
[2025-11-25 01:54:31] 2025-11-24 16:53:45,426 | INFO     | intersect: -6644889282.074808
[2025-11-25 01:54:31] 2025-11-24 16:53:45,426 | INFO     | chi2: 5.76102265874194
[2025-11-25 01:54:31] 2025-11-24 16:53:45,426 | INFO     | current chi2=5.76102265874194 (change=21.629924519438493 %)
[2025-11-25 01:54:31] 2025-11-24 16:53:45,426 | INFO     | left removable region: 20
[2025-11-25 01:54:31] 2025-11-24 16:53:45,427 | INFO     | sum of square deviations: 49098718390.90942
[2025-11-25 01:54:31] 2025-11-24 16:53:45,432 | INFO     | sum of deviations: 462577926736.23456
[2025-11-25 01:54:31] 2025-11-24 16:53:45,433 | INFO     | mean x: 1763985702.012939
[2025-11-25 01:54:31] 2025-11-24 16:53:45,433 | INFO     | mean y: 2717237.537892791
[2025-11-25 01:54:31] 2025-11-24 16:53:45,433 | INFO     | intersect: -16616471115.463694
[2025-11-25 01:54:31] 2025-11-24 16:53:45,433 | INFO     | chi2: 0.13096995793724722
[2025-11-25 01:54:31] 2025-11-24 16:53:45,434 | INFO     | current memory leak: 9.42 B/s (using 541 data points, chi2=0.13)
[2025-11-25 01:54:31] 2025-11-24 16:53:45,434 | INFO     | could have reported an average CPU frequency of 3915 MHz (22 samples)
[2025-11-25 01:54:31] 2025-11-24 16:53:45,435 | INFO     | ..............................
[2025-11-25 01:54:31] 2025-11-24 16:53:45,435 | INFO     | . Timing measurements:
[2025-11-25 01:54:31] 2025-11-24 16:53:45,435 | INFO     | . get job = 0 s
[2025-11-25 01:54:31] 2025-11-24 16:53:45,435 | INFO     | . initial setup = 3 s
[2025-11-25 01:54:31] 2025-11-24 16:53:45,435 | INFO     | . payload setup = 5 s
[2025-11-25 01:54:31] 2025-11-24 16:53:45,435 | INFO     | . stage-in = 0 s
[2025-11-25 01:54:31] 2025-11-24 16:53:45,435 | INFO     | . payload execution = 35145 s
[2025-11-25 01:54:31] 2025-11-24 16:53:45,435 | INFO     | . stage-out = 4 s
[2025-11-25 01:54:31] 2025-11-24 16:53:45,435 | INFO     | . log creation = 0 s
[2025-11-25 01:54:31] 2025-11-24 16:53:45,435 | INFO     | ..............................
[2025-11-25 01:54:31] 2025-11-24 16:53:45,764 | INFO     | 
[2025-11-25 01:54:31] 2025-11-24 16:53:45,765 | INFO     | job summary report
[2025-11-25 01:54:31] 2025-11-24 16:53:45,765 | INFO     | --------------------------------------------------
[2025-11-25 01:54:31] 2025-11-24 16:53:45,765 | INFO     | PanDA job id: 6894283544
[2025-11-25 01:54:31] 2025-11-24 16:53:45,765 | INFO     | task id: 47533967
[2025-11-25 01:54:31] 2025-11-24 16:53:45,765 | INFO     | errors: (none)
[2025-11-25 01:54:31] 2025-11-24 16:53:45,765 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:54:31] 2025-11-24 16:53:45,765 | INFO     | pilot state: finished 
[2025-11-25 01:54:31] 2025-11-24 16:53:45,765 | INFO     | transexitcode: 0
[2025-11-25 01:54:31] 2025-11-24 16:53:45,765 | INFO     | exeerrorcode: 0
[2025-11-25 01:54:31] 2025-11-24 16:53:45,765 | INFO     | exeerrordiag: 
[2025-11-25 01:54:31] 2025-11-24 16:53:45,765 | INFO     | exitcode: 0
[2025-11-25 01:54:31] 2025-11-24 16:53:45,765 | INFO     | exitmsg: OK
[2025-11-25 01:54:31] 2025-11-24 16:53:45,765 | INFO     | cpuconsumptiontime: 196788 s
[2025-11-25 01:54:31] 2025-11-24 16:53:45,765 | INFO     | nevents: 1000
[2025-11-25 01:54:31] 2025-11-24 16:53:45,766 | INFO     | neventsw: 0
[2025-11-25 01:54:31] 2025-11-24 16:53:45,766 | INFO     | pid: 1832640
[2025-11-25 01:54:31] 2025-11-24 16:53:45,766 | INFO     | pgrp: 1832640
[2025-11-25 01:54:31] 2025-11-24 16:53:45,766 | INFO     | corecount: 6
[2025-11-25 01:54:31] 2025-11-24 16:53:45,766 | INFO     | event service: False
[2025-11-25 01:54:31] 2025-11-24 16:53:45,766 | INFO     | sizes: {0: 2298756, 4: 2299018, 11: 2299046, 35155: 2339988, 35161: 2349773, 35162: 2349829, 35224: 2350203}
[2025-11-25 01:54:31] 2025-11-24 16:53:45,766 | INFO     | --------------------------------------------------
[2025-11-25 01:54:31] 2025-11-24 16:53:45,766 | INFO     | 
[2025-11-25 01:54:31] 2025-11-24 16:53:45,766 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-25 01:54:31] 2025-11-24 16:53:45,783 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,783 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,783 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,783 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,784 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,784 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,784 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,784 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,784 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,784 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,784 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,784 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,784 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,784 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,784 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,784 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,784 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,784 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:54:31] 2025-11-24 16:53:45,785 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,785 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:54:31] 2025-11-24 16:53:45,785 | INFO     | job 6894283544 has completed (purged errors)
[2025-11-25 01:54:31] 2025-11-24 16:53:45,785 | INFO     | overall cleanup function is called
[2025-11-25 01:54:31] 2025-11-24 16:53:46,801 | INFO     | --- collectZombieJob: --- 10, [1832640]
[2025-11-25 01:54:31] 2025-11-24 16:53:46,801 | INFO     | zombie collector waiting for pid 1832640
[2025-11-25 01:54:31] 2025-11-24 16:53:46,801 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:54:31] 2025-11-24 16:53:46,801 | INFO     | collected zombie processes
[2025-11-25 01:54:31] 2025-11-24 16:53:46,801 | INFO     | will attempt to kill all subprocesses of pid=1832640
[2025-11-25 01:54:31] 2025-11-24 16:53:46,887 | INFO     | process IDs to be killed: [1832640] (in reverse order)
[2025-11-25 01:54:31] 2025-11-24 16:53:46,928 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:54:31] 2025-11-24 16:53:46,928 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:54:31] 2025-11-24 16:53:46,931 | INFO     | did not find any defunct processes belonging to 1832640
[2025-11-25 01:54:31] 2025-11-24 16:53:46,934 | INFO     | did not find any defunct processes belonging to 1832640
[2025-11-25 01:54:31] 2025-11-24 16:53:46,935 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:54:31] 2025-11-24 16:53:46,935 | INFO     | ready for new job
[2025-11-25 01:54:31] 2025-11-24 16:53:46,935 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:54:31] 2025-11-24 16:53:46,937 | INFO     | ***************************************
[2025-11-25 01:54:31] 2025-11-24 16:53:46,938 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:54:31] 2025-11-24 16:53:46,938 | INFO     | ***************************************
[2025-11-25 01:54:31] 2025-11-24 16:53:46,938 | INFO     | 
[2025-11-25 01:54:31] 2025-11-24 16:53:46,939 | INFO     | architecture information:
[2025-11-25 01:54:31] 2025-11-24 16:53:46,939 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:54:31] 2025-11-24 16:53:46,952 | INFO     | cat /etc/os-release:
[2025-11-25 01:54:31] NAME="CentOS Linux"
[2025-11-25 01:54:31] VERSION="7 (Core)"
[2025-11-25 01:54:31] ID="centos"
[2025-11-25 01:54:31] ID_LIKE="rhel fedora"
[2025-11-25 01:54:31] VERSION_ID="7"
[2025-11-25 01:54:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:54:31] ANSI_COLOR="0;31"
[2025-11-25 01:54:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:54:31] HOME_URL="https://www.centos.org/"
[2025-11-25 01:54:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:54:31] 
[2025-11-25 01:54:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:54:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:54:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:54:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:54:31] 
[2025-11-25 01:54:31] 2025-11-24 16:53:46,952 | INFO     | ***************************************
[2025-11-25 01:54:31] 2025-11-24 16:53:47,455 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-25 01:54:31] 2025-11-24 16:53:47,469 | INFO     | sufficient remaining disk space (74566336512 B)
[2025-11-25 01:54:31] 2025-11-24 16:53:47,469 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:54:31] 2025-11-24 16:53:47,469 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:54:31] 2025-11-24 16:53:47,469 | INFO     | update_server=False
[2025-11-25 01:54:31] 2025-11-24 16:53:47,469 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:54:31] 2025-11-24 16:53:47,470 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:54:31] 2025-11-24 16:53:47,470 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:54:31] 2025-11-24 16:53:47,671 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:54:31] 2025-11-24 16:53:47,978 | INFO     | all data control threads have been joined
[2025-11-25 01:54:31] 2025-11-24 16:53:48,238 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:54:31] 2025-11-24 16:53:48,238 | INFO     | aborting loop
[2025-11-25 01:54:31] 2025-11-24 16:53:48,475 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:54:31] 2025-11-24 16:53:48,475 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:54:31] 2025-11-24 16:53:48,658 | INFO     | [job] validate thread has finished
[2025-11-25 01:54:31] 2025-11-24 16:53:48,671 | INFO     | all payload control threads have been joined
[2025-11-25 01:54:31] 2025-11-24 16:53:48,713 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:54:31] 2025-11-24 16:53:48,803 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:54:31] 2025-11-24 16:53:48,832 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:54:31] 2025-11-24 16:53:48,880 | INFO     | all job control threads have been joined
[2025-11-25 01:54:31] 2025-11-24 16:53:48,886 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:54:31] 2025-11-24 16:53:48,984 | INFO     | [data] control thread has finished
[2025-11-25 01:54:31] 2025-11-24 16:53:49,102 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:54:31] 2025-11-24 16:53:49,244 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:54:31] 2025-11-24 16:53:49,448 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:54:31] 2025-11-24 16:53:49,475 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:54:31] 2025-11-24 16:53:49,524 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:54:31] 2025-11-24 16:53:49,677 | INFO     | [payload] control thread has finished
[2025-11-25 01:54:31] 2025-11-24 16:53:49,885 | INFO     | [job] control thread has finished
[2025-11-25 01:54:31] 2025-11-24 16:53:51,677 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:54:31] 2025-11-24 16:54:17,011 | INFO     | PID=1825945 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 01:54:31] 2025-11-24 16:54:17,011 | INFO     | .. there are 2 such processes running
[2025-11-25 01:54:31] 2025-11-24 16:54:17,012 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:54:31] 2025-11-24 16:54:17,012 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:54:31] 2025-11-24 16:54:17,012 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:54:31] 2025-11-24 16:54:25,277 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:54:31] 2025-11-24 16:54:26,050 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140179262355264)>', '<ExcThread(monitor, started 140178328905472)>']
[2025-11-25 01:54:31] 2025-11-24 16:54:26,051 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:54:31] 2025-11-24 16:54:26,051 | INFO     | [monitor] control thread has ended
[2025-11-25 01:54:31] 2025-11-24 16:54:31,051 | INFO     | all workflow threads have been joined
[2025-11-25 01:54:31] 2025-11-24 16:54:31,052 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:54:31] 2025-11-24 16:54:31,052 | INFO     | traces error code: 0
[2025-11-25 01:54:31] 2025-11-24 16:54:31,052 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:54:31] 2025-11-24 16:54:31,147 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:54:31] 2025-11-24 16:54:31,149 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:54:31] 2025-11-24 16:54:31,151 [wrapper] pilotpid: 1825945
[2025-11-25 01:54:31] 2025-11-24 16:54:31,154 [wrapper] Pilot exit status: 0
[2025-11-25 01:54:31] 2025-11-24 16:54:31,162 [wrapper] pandaids: 6894283544
[2025-11-25 01:54:31] 2025-11-24 16:54:31,185 [wrapper] cleanup supervisor_pilot 1951119 1825946
[2025-11-25 01:54:31] 2025-11-24 16:54:31,188 [wrapper] Test setup, not cleaning
[2025-11-25 01:54:31] 2025-11-24 16:54:31,190 [wrapper] apfmon messages muted
[2025-11-25 01:54:31] 2025-11-24 16:54:31,192 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:54:31] 2025-11-24 16:54:31,194 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:54:31]  *** Error codes and diagnostics ***
[2025-11-25 01:54:31]     "exeErrorCode": 0,
[2025-11-25 01:54:31]     "exeErrorDiag": "",
[2025-11-25 01:54:31]     "pilotErrorCode": 0,
[2025-11-25 01:54:31]     "pilotErrorDiag": "",
[2025-11-25 01:54:31]  *** Listing of results directory ***
[2025-11-25 01:54:31] total 1330696
[2025-11-25 01:54:31] -rw-r--r--. 1 boinc boinc    576529 Nov 21 18:12 pilot3.tar.gz
[2025-11-25 01:54:31] -rw-r--r--. 1 boinc boinc      5112 Nov 21 18:19 queuedata.json
[2025-11-25 01:54:31] -rwx------. 1 boinc boinc     36292 Nov 21 18:20 runpilot2-wrapper.sh
[2025-11-25 01:54:31] -rw-r--r--. 1 boinc boinc       100 Nov 24 16:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:54:31] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 16:06 run_atlas
[2025-11-25 01:54:31] -rw-r--r--. 1 boinc boinc       105 Nov 24 16:06 job.xml
[2025-11-25 01:54:31] -rw-r--r--. 2 boinc boinc 411434970 Nov 24 16:06 EVNT.47493127._002348.pool.root.1
[2025-11-25 01:54:31] -rw-r--r--. 2 boinc boinc     15847 Nov 24 16:06 start_atlas.sh
[2025-11-25 01:54:31] drwxrwx--x. 2 boinc boinc        68 Nov 24 16:06 shared
[2025-11-25 01:54:31] -rw-r--r--. 2 boinc boinc    590106 Nov 24 16:06 input.tar.gz
[2025-11-25 01:54:31] -rw-r--r--. 1 boinc boinc         0 Nov 24 16:06 boinc_lockfile
[2025-11-25 01:54:31] -rw-r--r--. 1 boinc boinc      2785 Nov 24 16:06 pandaJob.out
[2025-11-25 01:54:31] -rw-------. 1 boinc boinc    989786 Nov 24 16:06 agis_schedconf.cvmfs.json
[2025-11-25 01:54:31] drwx------. 5 boinc boinc      4096 Nov 24 16:06 pilot3
[2025-11-25 01:54:31] -rw-r--r--. 1 boinc boinc      9372 Nov 24 19:04 init_data.xml
[2025-11-25 01:54:31] -rw-r--r--. 1 boinc boinc       532 Nov 25 01:42 boinc_task_state.xml
[2025-11-25 01:54:31] -rw-------. 1 boinc boinc 934186238 Nov 25 01:52 HITS.47533967._003200.pool.root.1
[2025-11-25 01:54:31] -rw-------. 1 boinc boinc      1033 Nov 25 01:52 memory_monitor_summary.json
[2025-11-25 01:54:31] -rw-------. 1 boinc boinc   1516227 Nov 25 01:52 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:54:31] -rw-------. 1 boinc boinc   1623520 Nov 25 01:52 log.47533967._003200.job.log.tgz.1
[2025-11-25 01:54:31] -rw-------. 1 boinc boinc      8579 Nov 25 01:53 heartbeat.json
[2025-11-25 01:54:31] -rw-r--r--. 1 boinc boinc      8192 Nov 25 01:54 boinc_mmap_file
[2025-11-25 01:54:31] -rw-r--r--. 1 boinc boinc        29 Nov 25 01:54 wrapper_checkpoint.txt
[2025-11-25 01:54:31] -rw-------. 1 boinc boinc        95 Nov 25 01:54 pilot_heartbeat.json
[2025-11-25 01:54:31] -rw-------. 1 boinc boinc      4823 Nov 25 01:54 pilotlog.txt
[2025-11-25 01:54:31] -rw-------. 1 boinc boinc   4929615 Nov 25 01:54 log.47533967._003200.job.log.1
[2025-11-25 01:54:31] -rw-------. 1 boinc boinc       353 Nov 25 01:54 output.list
[2025-11-25 01:54:31] -rw-r--r--. 1 boinc boinc       620 Nov 25 01:54 runtime_log
[2025-11-25 01:54:31] -rw-------. 1 boinc boinc   6574080 Nov 25 01:54 result.tar.gz
[2025-11-25 01:54:31] -rw-r--r--. 1 boinc boinc      8776 Nov 25 01:54 runtime_log.err
[2025-11-25 01:54:31] -rw-------. 1 boinc boinc       652 Nov 25 01:54 1gONDm8Ucg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKVHKDmSHtpzn.diag
[2025-11-25 01:54:31] -rw-r--r--. 1 boinc boinc     20792 Nov 25 01:54 stderr.txt
[2025-11-25 01:54:31] HITS file was successfully produced:
[2025-11-25 01:54:31] -rw-------. 1 boinc boinc 934186238 Nov 25 01:52 shared/HITS.pool.root.1
[2025-11-25 01:54:31]  *** Contents of shared directory: ***
[2025-11-25 01:54:31] total 1321100
[2025-11-25 01:54:31] -rw-r--r--. 2 boinc boinc 411434970 Nov 24 16:06 ATLAS.root_0
[2025-11-25 01:54:31] -rw-r--r--. 2 boinc boinc     15847 Nov 24 16:06 start_atlas.sh
[2025-11-25 01:54:31] -rw-r--r--. 2 boinc boinc    590106 Nov 24 16:06 input.tar.gz
[2025-11-25 01:54:31] -rw-------. 1 boinc boinc 934186238 Nov 25 01:52 HITS.pool.root.1
[2025-11-25 01:54:31] -rw-------. 1 boinc boinc   6574080 Nov 25 01:54 result.tar.gz
01:54:32 (1822173): run_atlas exited; CPU time 196726.334859
01:54:32 (1822173): called boinc_finish(0)

</stderr_txt>
]]>

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