Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:23:31 (10207): wrapper (7.7.26015): starting
16:23:31 (10207): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 16:23:31] Arguments: --nthreads 8
[2025-11-25 16:23:31] Threads: 8
[2025-11-25 16:23:31] Checking for CVMFS
[2025-11-25 16:23:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 16:23:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 16:23:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 16:23:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 16:23:34] 2.11.2.0 27391 86457 89472 153287 0 84 24570253 25165824 4632 130560 14 24883028 99.867 16729371 1446 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 16:23:34] CVMFS is ok
[2025-11-25 16:23:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:23:34] Checking for apptainer binary...
[2025-11-25 16:23:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 16:23:34] Running /usr/bin/apptainer --version
[2025-11-25 16:23:34] apptainer version 1.3.2-1.el7
[2025-11-25 16:23:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:23:55] cg-vwn417.simple-grid.lan
[2025-11-25 16:23:55] apptainer works
[2025-11-25 16:23:55] Set ATHENA_PROC_NUMBER=8
[2025-11-25 16:23:55] Set ATHENA_CORE_NUMBER=8
[2025-11-25 16:23:56] Starting ATLAS job with PandaID=6895331975
[2025-11-25 16:23:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:29:26]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:29:26] 2025-11-26 16:28:41,858 | INFO     | monitor loop #6052: job 0:6895331975 is in state 'finished'
[2025-11-26 17:29:26] 2025-11-26 16:28:41,858 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:29:26] 2025-11-26 16:28:43,578 | INFO     | time since job start (90079s) is within the limit (172800.0s)
[2025-11-26 17:29:26] 2025-11-26 16:28:44,363 | INFO     | monitor loop #6053: job 0:6895331975 is in state 'finished'
[2025-11-26 17:29:26] 2025-11-26 16:28:44,363 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:29:26] 2025-11-26 16:28:45,585 | INFO     | time since job start (90081s) is within the limit (172800.0s)
[2025-11-26 17:29:26] 2025-11-26 16:28:46,871 | INFO     | monitor loop #6054: job 0:6895331975 is in state 'finished'
[2025-11-26 17:29:26] 2025-11-26 16:28:46,871 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:29:26] 2025-11-26 16:28:47,595 | INFO     | time since job start (90083s) is within the limit (172800.0s)
[2025-11-26 17:29:26] 2025-11-26 16:28:49,379 | INFO     | monitor loop #6055: job 0:6895331975 is in state 'finished'
[2025-11-26 17:29:26] 2025-11-26 16:28:49,379 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:29:26] 2025-11-26 16:28:49,602 | INFO     | time since job start (90085s) is within the limit (172800.0s)
[2025-11-26 17:29:26] 2025-11-26 16:28:50,080 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 17:29:26] 2025-11-26 16:28:50,081 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 17:29:26] 2025-11-26 16:28:50,082 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895331975/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 17:29:26] 2025-11-26 16:28:50,083 | INFO     | extracted standard info from prmon json
[2025-11-26 17:29:26] 2025-11-26 16:28:50,083 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 17:29:26] 2025-11-26 16:28:50,083 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 17:29:26] 2025-11-26 16:28:50,110 | INFO     | fitting pss+swap vs Time
[2025-11-26 17:29:26] 2025-11-26 16:28:50,112 | INFO     | sum of square deviations: 978962278808.49
[2025-11-26 17:29:26] 2025-11-26 16:28:50,173 | INFO     | sum of deviations: 3361750404383.666
[2025-11-26 17:29:26] 2025-11-26 16:28:50,173 | INFO     | mean x: 1764129658.1533742
[2025-11-26 17:29:26] 2025-11-26 16:28:50,174 | INFO     | mean y: 2836506.5214723926
[2025-11-26 17:29:26] 2025-11-26 16:28:50,174 | INFO     | intersect: -6055173817.329314
[2025-11-26 17:29:26] 2025-11-26 16:28:50,176 | INFO     | chi2: 24.78397950201991
[2025-11-26 17:29:26] 2025-11-26 16:28:50,178 | INFO     | sum of square deviations: 968986970609.3162
[2025-11-26 17:29:26] 2025-11-26 16:28:50,244 | INFO     | sum of deviations: 3841858161342.813
[2025-11-26 17:29:26] 2025-11-26 16:28:50,244 | INFO     | mean x: 1764129505.6573188
[2025-11-26 17:29:26] 2025-11-26 16:28:50,244 | INFO     | mean y: 2843845.3030095757
[2025-11-26 17:29:26] 2025-11-26 16:28:50,244 | INFO     | intersect: -6991610718.635448
[2025-11-26 17:29:26] 2025-11-26 16:28:50,246 | INFO     | chi2: 21.58845534080638
[2025-11-26 17:29:26] 2025-11-26 16:28:50,246 | INFO     | current chi2=21.58845534080638 (change=12.893507117987621 %)
[2025-11-26 17:29:26] 2025-11-26 16:28:50,246 | INFO     | right removable region: 1461
[2025-11-26 17:29:26] 2025-11-26 16:28:50,248 | INFO     | sum of square deviations: 968985938489.3162
[2025-11-26 17:29:26] 2025-11-26 16:28:50,312 | INFO     | sum of deviations: 2748320801500.841
[2025-11-26 17:29:26] 2025-11-26 16:28:50,312 | INFO     | mean x: 1764129810.6573188
[2025-11-26 17:29:26] 2025-11-26 16:28:50,312 | INFO     | mean y: 2845883.1833105334
[2025-11-26 17:29:26] 2025-11-26 16:28:50,312 | INFO     | intersect: -5000729981.638907
[2025-11-26 17:29:26] 2025-11-26 16:28:50,314 | INFO     | chi2: 20.126581104725734
[2025-11-26 17:29:26] 2025-11-26 16:28:50,314 | INFO     | current chi2=20.126581104725734 (change=18.791971631975386 %)
[2025-11-26 17:29:26] 2025-11-26 16:28:50,314 | INFO     | left removable region: 10
[2025-11-26 17:29:26] 2025-11-26 16:28:50,316 | INFO     | sum of square deviations: 947278265370.9708
[2025-11-26 17:29:26] 2025-11-26 16:28:50,388 | INFO     | sum of deviations: 2788735132522.673
[2025-11-26 17:29:26] 2025-11-26 16:28:50,389 | INFO     | mean x: 1764129780.1660924
[2025-11-26 17:29:26] 2025-11-26 16:28:50,389 | INFO     | mean y: 2863479.2046864233
[2025-11-26 17:29:26] 2025-11-26 16:28:50,389 | INFO     | intersect: -5190637602.921424
[2025-11-26 17:29:26] 2025-11-26 16:28:50,391 | INFO     | chi2: 12.463204322773592
[2025-11-26 17:29:26] 2025-11-26 16:28:50,391 | INFO     | current memory leak: 2.94 B/s (using 1451 data points, chi2=12.46)
[2025-11-26 17:29:26] 2025-11-26 16:28:50,396 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-26 17:29:26] 2025-11-26 16:28:50,396 | INFO     | ..............................
[2025-11-26 17:29:26] 2025-11-26 16:28:50,396 | INFO     | . Timing measurements:
[2025-11-26 17:29:26] 2025-11-26 16:28:50,396 | INFO     | . get job = 0 s
[2025-11-26 17:29:26] 2025-11-26 16:28:50,396 | INFO     | . initial setup = 9 s
[2025-11-26 17:29:26] 2025-11-26 16:28:50,396 | INFO     | . payload setup = 152 s
[2025-11-26 17:29:26] 2025-11-26 16:28:50,396 | INFO     | . stage-in = 0 s
[2025-11-26 17:29:26] 2025-11-26 16:28:50,396 | INFO     | . payload execution = 89630 s
[2025-11-26 17:29:26] 2025-11-26 16:28:50,396 | INFO     | . stage-out = 5 s
[2025-11-26 17:29:26] 2025-11-26 16:28:50,396 | INFO     | . log creation = 2 s
[2025-11-26 17:29:26] 2025-11-26 16:28:50,397 | INFO     | ..............................
[2025-11-26 17:29:26] 2025-11-26 16:28:50,517 | INFO     | 
[2025-11-26 17:29:26] 2025-11-26 16:28:50,517 | INFO     | job summary report
[2025-11-26 17:29:26] 2025-11-26 16:28:50,517 | INFO     | --------------------------------------------------
[2025-11-26 17:29:26] 2025-11-26 16:28:50,517 | INFO     | PanDA job id: 6895331975
[2025-11-26 17:29:26] 2025-11-26 16:28:50,517 | INFO     | task id: 47556137
[2025-11-26 17:29:26] 2025-11-26 16:28:50,517 | INFO     | errors: (none)
[2025-11-26 17:29:26] 2025-11-26 16:28:50,517 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 17:29:26] 2025-11-26 16:28:50,518 | INFO     | pilot state: finished 
[2025-11-26 17:29:26] 2025-11-26 16:28:50,518 | INFO     | transexitcode: 0
[2025-11-26 17:29:26] 2025-11-26 16:28:50,518 | INFO     | exeerrorcode: 0
[2025-11-26 17:29:26] 2025-11-26 16:28:50,518 | INFO     | exeerrordiag: 
[2025-11-26 17:29:26] 2025-11-26 16:28:50,518 | INFO     | exitcode: 0
[2025-11-26 17:29:26] 2025-11-26 16:28:50,518 | INFO     | exitmsg: OK
[2025-11-26 17:29:26] 2025-11-26 16:28:50,518 | INFO     | cpuconsumptiontime: 335767 s
[2025-11-26 17:29:26] 2025-11-26 16:28:50,518 | INFO     | nevents: 1000
[2025-11-26 17:29:26] 2025-11-26 16:28:50,518 | INFO     | neventsw: 0
[2025-11-26 17:29:26] 2025-11-26 16:28:50,518 | INFO     | pid: 20518
[2025-11-26 17:29:26] 2025-11-26 16:28:50,518 | INFO     | pgrp: 20518
[2025-11-26 17:29:26] 2025-11-26 16:28:50,518 | INFO     | corecount: 8
[2025-11-26 17:29:26] 2025-11-26 16:28:50,518 | INFO     | event service: False
[2025-11-26 17:29:26] 2025-11-26 16:28:50,519 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284371, 13: 2284371, 23: 2284427, 34: 2284455, 45: 2284611, 56: 2284639, 66: 2284667, 77: 2284695, 88: 2284751, 98: 2285321, 99
[2025-11-26 17:29:26] 2025-11-26 16:28:50,519 | INFO     | --------------------------------------------------
[2025-11-26 17:29:26] 2025-11-26 16:28:50,519 | INFO     | 
[2025-11-26 17:29:26] 2025-11-26 16:28:50,519 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-26 17:29:26] 2025-11-26 16:28:50,779 | INFO     | PID=13976 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 17:29:26] 2025-11-26 16:28:50,780 | INFO     | .. there are 9 such processes running
[2025-11-26 17:29:26] 2025-11-26 16:28:50,874 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,874 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,875 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,875 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,875 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,875 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,875 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,875 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,875 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,875 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,875 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,875 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,875 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,876 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,876 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,876 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,876 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,876 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 17:29:26] 2025-11-26 16:28:50,876 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,876 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 17:29:26] 2025-11-26 16:28:50,876 | INFO     | job 6895331975 has completed (purged errors)
[2025-11-26 17:29:26] 2025-11-26 16:28:50,877 | INFO     | overall cleanup function is called
[2025-11-26 17:29:26] 2025-11-26 16:28:51,901 | INFO     | --- collectZombieJob: --- 10, [20518]
[2025-11-26 17:29:26] 2025-11-26 16:28:51,901 | INFO     | zombie collector waiting for pid 20518
[2025-11-26 17:29:26] 2025-11-26 16:28:51,901 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 17:29:26] 2025-11-26 16:28:51,901 | INFO     | collected zombie processes
[2025-11-26 17:29:26] 2025-11-26 16:28:51,901 | INFO     | will attempt to kill all subprocesses of pid=20518
[2025-11-26 17:29:26] 2025-11-26 16:28:52,016 | INFO     | process IDs to be killed: [20518] (in reverse order)
[2025-11-26 17:29:26] 2025-11-26 16:28:52,930 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 17:29:26] 2025-11-26 16:28:52,931 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 17:29:26] 2025-11-26 16:28:52,934 | INFO     | did not find any defunct processes belonging to 20518
[2025-11-26 17:29:26] 2025-11-26 16:28:52,942 | INFO     | did not find any defunct processes belonging to 20518
[2025-11-26 17:29:26] 2025-11-26 16:28:53,000 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 17:29:26] 2025-11-26 16:28:53,000 | INFO     | ready for new job
[2025-11-26 17:29:26] 2025-11-26 16:28:53,000 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 17:29:26] 2025-11-26 16:28:53,006 | INFO     | ***************************************
[2025-11-26 17:29:26] 2025-11-26 16:28:53,006 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 17:29:26] 2025-11-26 16:28:53,006 | INFO     | ***************************************
[2025-11-26 17:29:26] 2025-11-26 16:28:53,007 | INFO     | 
[2025-11-26 17:29:26] 2025-11-26 16:28:53,007 | INFO     | pilot is running in a VM
[2025-11-26 17:29:26] 2025-11-26 16:28:53,007 | INFO     | architecture information:
[2025-11-26 17:29:26] 2025-11-26 16:28:53,011 | INFO     | executing command: cat /etc/os-release
[2025-11-26 17:29:26] 2025-11-26 16:28:53,369 | INFO     | cat /etc/os-release:
[2025-11-26 17:29:26] NAME="CentOS Linux"
[2025-11-26 17:29:26] VERSION="7 (Core)"
[2025-11-26 17:29:26] ID="centos"
[2025-11-26 17:29:26] ID_LIKE="rhel fedora"
[2025-11-26 17:29:26] VERSION_ID="7"
[2025-11-26 17:29:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 17:29:26] ANSI_COLOR="0;31"
[2025-11-26 17:29:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 17:29:26] HOME_URL="https://www.centos.org/"
[2025-11-26 17:29:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 17:29:26] 
[2025-11-26 17:29:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 17:29:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 17:29:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 17:29:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 17:29:26] 
[2025-11-26 17:29:26] 2025-11-26 16:28:53,370 | INFO     | ***************************************
[2025-11-26 17:29:26] 2025-11-26 16:28:53,873 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-26 17:29:26] 2025-11-26 16:28:54,028 | INFO     | sufficient remaining disk space (495860056064 B)
[2025-11-26 17:29:26] 2025-11-26 16:28:54,028 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 17:29:26] 2025-11-26 16:28:54,028 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 17:29:26] 2025-11-26 16:28:54,028 | INFO     | update_server=False
[2025-11-26 17:29:26] 2025-11-26 16:28:54,028 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:29:26] 2025-11-26 16:28:54,447 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 17:29:26] 2025-11-26 16:28:54,447 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 17:29:26] 2025-11-26 16:28:54,447 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:29:26] 2025-11-26 16:28:54,447 | INFO     | will abort loop
[2025-11-26 17:29:26] 2025-11-26 16:28:54,824 | INFO     | all job control threads have been joined
[2025-11-26 17:29:26] 2025-11-26 16:28:55,012 | INFO     | all data control threads have been joined
[2025-11-26 17:29:26] 2025-11-26 16:28:55,034 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:29:26] 2025-11-26 16:28:55,255 | INFO     | all payload control threads have been joined
[2025-11-26 17:29:26] 2025-11-26 16:28:55,276 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:29:26] 2025-11-26 16:28:55,452 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:29:26] 2025-11-26 16:28:55,473 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:29:26] 2025-11-26 16:28:55,530 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:29:26] 2025-11-26 16:28:55,533 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:29:26] 2025-11-26 16:28:55,830 | INFO     | [job] control thread has finished
[2025-11-26 17:29:26] 2025-11-26 16:28:55,850 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:29:26] 2025-11-26 16:28:55,887 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:29:26] 2025-11-26 16:28:55,950 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:29:26] 2025-11-26 16:28:56,018 | INFO     | [data] control thread has finished
[2025-11-26 17:29:26] 2025-11-26 16:28:56,066 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:29:26] 2025-11-26 16:28:56,261 | INFO     | [payload] control thread has finished
[2025-11-26 17:29:26] 2025-11-26 16:28:56,399 | INFO     | [job] validate thread has finished
[2025-11-26 17:29:26] 2025-11-26 16:28:56,416 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:29:26] 2025-11-26 16:28:56,480 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:29:26] 2025-11-26 16:28:56,539 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:29:26] 2025-11-26 16:28:57,480 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:29:26] 2025-11-26 16:28:59,284 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:29:26] 2025-11-26 16:29:01,771 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:29:26] 2025-11-26 16:29:02,942 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139927888213824)>', '<ExcThread(monitor, started 139927601796864)>']
[2025-11-26 17:29:26] 2025-11-26 16:29:07,968 | INFO     | all workflow threads have been joined
[2025-11-26 17:29:26] 2025-11-26 16:29:07,968 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:29:26] 2025-11-26 16:29:07,969 | INFO     | traces error code: 0
[2025-11-26 17:29:26] 2025-11-26 16:29:07,972 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:29:26] 2025-11-26 16:29:22,986 | INFO     | PID=13976 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 17:29:26] 2025-11-26 16:29:22,987 | INFO     | .. there are 9 such processes running
[2025-11-26 17:29:26] 2025-11-26 16:29:22,987 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:29:26] 2025-11-26 16:29:22,988 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:29:26] 2025-11-26 16:29:22,988 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:29:26] 2025-11-26 16:29:22,988 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:29:26] 2025-11-26 16:29:22,988 | INFO     | [monitor] control thread has ended
[2025-11-26 17:29:26] 2025-11-26 16:29:23,391 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:29:26] 2025-11-26 16:29:23,491 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:29:26] 2025-11-26 16:29:23,599 [wrapper] pilotpid: 13976
[2025-11-26 17:29:26] 2025-11-26 16:29:23,624 [wrapper] Pilot exit status: 0
[2025-11-26 17:29:26] 2025-11-26 16:29:23,941 [wrapper] pandaids: 6895331975
[2025-11-26 17:29:26] 2025-11-26 16:29:24,706 [wrapper] cleanup supervisor_pilot 28289 13977
[2025-11-26 17:29:26] 2025-11-26 16:29:24,795 [wrapper] Test setup, not cleaning
[2025-11-26 17:29:26] 2025-11-26 16:29:24,886 [wrapper] apfmon messages muted
[2025-11-26 17:29:26] 2025-11-26 16:29:24,994 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:29:26] 2025-11-26 16:29:25,101 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:29:26]  *** Error codes and diagnostics ***
[2025-11-26 17:29:26]     "exeErrorCode": 0,
[2025-11-26 17:29:26]     "exeErrorDiag": "",
[2025-11-26 17:29:26]     "pilotErrorCode": 0,
[2025-11-26 17:29:26]     "pilotErrorDiag": "",
[2025-11-26 17:29:26]  *** Listing of results directory ***
[2025-11-26 17:29:26] total 1338364
[2025-11-26 17:29:26] -rw-r--r--. 1 boinc boinc    576529 Nov 22 00:51 pilot3.tar.gz
[2025-11-26 17:29:26] -rw-r--r--. 1 boinc boinc      5112 Nov 22 00:55 queuedata.json
[2025-11-26 17:29:26] -rwx------. 1 boinc boinc     36292 Nov 22 00:58 runpilot2-wrapper.sh
[2025-11-26 17:29:26] -rw-r--r--. 1 boinc boinc       100 Nov 25 16:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:29:26] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 16:23 run_atlas
[2025-11-26 17:29:26] -rw-r--r--. 1 boinc boinc       105 Nov 25 16:23 job.xml
[2025-11-26 17:29:26] -rw-r--r--. 1 boinc boinc      6391 Nov 25 16:23 init_data.xml
[2025-11-26 17:29:26] -rw-r--r--. 2 boinc boinc 412911984 Nov 25 16:23 EVNT.47483658._000183.pool.root.1
[2025-11-26 17:29:26] -rw-r--r--. 2 boinc boinc     15847 Nov 25 16:23 start_atlas.sh
[2025-11-26 17:29:26] drwxrwx--x. 2 boinc boinc        68 Nov 25 16:23 shared
[2025-11-26 17:29:26] -rw-r--r--. 2 boinc boinc    590099 Nov 25 16:23 input.tar.gz
[2025-11-26 17:29:26] -rw-r--r--. 1 boinc boinc         0 Nov 25 16:23 boinc_lockfile
[2025-11-26 17:29:26] -rw-r--r--. 1 boinc boinc      2786 Nov 25 16:23 pandaJob.out
[2025-11-26 17:29:26] -rw-------. 1 boinc boinc    991909 Nov 25 16:27 agis_schedconf.cvmfs.json
[2025-11-26 17:29:26] drwx------. 5 boinc boinc      4096 Nov 25 16:27 pilot3
[2025-11-26 17:29:26] -rw-r--r--. 1 boinc boinc       533 Nov 26 17:03 boinc_task_state.xml
[2025-11-26 17:29:26] -rw-------. 1 boinc boinc 924625099 Nov 26 17:25 HITS.47556137._001829.pool.root.1
[2025-11-26 17:29:26] -rw-------. 1 boinc boinc      1031 Nov 26 17:26 memory_monitor_summary.json
[2025-11-26 17:29:26] -rw-------. 1 boinc boinc   1516240 Nov 26 17:26 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:29:26] -rw-------. 1 boinc boinc   2535986 Nov 26 17:27 log.47556137._001829.job.log.tgz.1
[2025-11-26 17:29:26] -rw-------. 1 boinc boinc      8628 Nov 26 17:28 heartbeat.json
[2025-11-26 17:29:26] -rw-r--r--. 1 boinc boinc        29 Nov 26 17:28 wrapper_checkpoint.txt
[2025-11-26 17:29:26] -rw-r--r--. 1 boinc boinc      8192 Nov 26 17:28 boinc_mmap_file
[2025-11-26 17:29:26] -rw-------. 1 boinc boinc        95 Nov 26 17:29 pilot_heartbeat.json
[2025-11-26 17:29:26] -rw-------. 1 boinc boinc       820 Nov 26 17:29 pilotlog.txt
[2025-11-26 17:29:26] -rw-------. 1 boinc boinc  11987037 Nov 26 17:29 log.47556137._001829.job.log.1
[2025-11-26 17:29:26] -rw-------. 1 boinc boinc       353 Nov 26 17:29 output.list
[2025-11-26 17:29:26] -rw-r--r--. 1 boinc boinc       620 Nov 26 17:29 runtime_log
[2025-11-26 17:29:26] -rw-------. 1 boinc boinc  14540800 Nov 26 17:29 result.tar.gz
[2025-11-26 17:29:26] -rw-r--r--. 1 boinc boinc      8817 Nov 26 17:29 runtime_log.err
[2025-11-26 17:29:26] -rw-------. 1 boinc boinc       662 Nov 26 17:29 GuyMDmVCqg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvrHKDmTb8iYm.diag
[2025-11-26 17:29:26] -rw-r--r--. 1 boinc boinc     21488 Nov 26 17:29 stderr.txt
[2025-11-26 17:29:26] HITS file was successfully produced:
[2025-11-26 17:29:26] -rw-------. 1 boinc boinc 924625099 Nov 26 17:25 shared/HITS.pool.root.1
[2025-11-26 17:29:26]  *** Contents of shared directory: ***
[2025-11-26 17:29:26] total 1320988
[2025-11-26 17:29:26] -rw-r--r--. 2 boinc boinc 412911984 Nov 25 16:23 ATLAS.root_0
[2025-11-26 17:29:26] -rw-r--r--. 2 boinc boinc     15847 Nov 25 16:23 start_atlas.sh
[2025-11-26 17:29:26] -rw-r--r--. 2 boinc boinc    590099 Nov 25 16:23 input.tar.gz
[2025-11-26 17:29:26] -rw-------. 1 boinc boinc 924625099 Nov 26 17:25 HITS.pool.root.1
[2025-11-26 17:29:26] -rw-------. 1 boinc boinc  14540800 Nov 26 17:29 result.tar.gz
17:29:28 (10207): run_atlas exited; CPU time 336383.780529
17:29:28 (10207): called boinc_finish(0)

</stderr_txt>
]]>

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