Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:37:34 (2535323): wrapper (7.7.26015): starting
08:37:34 (2535323): wrapper: running run_atlas (--nthreads 3)
[2025-11-23 08:37:34] Arguments: --nthreads 3
[2025-11-23 08:37:34] Threads: 3
[2025-11-23 08:37:34] Checking for CVMFS
[2025-11-23 08:37:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 08:37:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 08:37:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 08:37:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 08:37:35] 2.9.2.0 2430758 21 52940 153201 2 88 34810536 36864001 0 130560 0 313102 100.000 3 37 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-23 08:37:35] CVMFS is ok
[2025-11-23 08:37:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 08:37:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 08:37:35] Further information can be found at the LHC@home message board.
[2025-11-23 08:37:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 08:37:35] Checking for apptainer binary...
[2025-11-23 08:37:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 08:37:35] Running /usr/bin/apptainer --version
[2025-11-23 08:37:35] apptainer version 1.4.1-1.1
[2025-11-23 08:37:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 08:37:35] thA335
[2025-11-23 08:37:35] apptainer works
[2025-11-23 08:37:35] Set ATHENA_PROC_NUMBER=3
[2025-11-23 08:37:35] Set ATHENA_CORE_NUMBER=3
[2025-11-23 08:37:35] Starting ATLAS job with PandaID=6895338465
[2025-11-23 08:37:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 08:41:53]  *** The last 200 lines of the pilot log: ***
[2025-11-23 08:41:53] NAME="CentOS Linux"
[2025-11-23 08:41:53] VERSION="7 (Core)"
[2025-11-23 08:41:53] ID="centos"
[2025-11-23 08:41:53] ID_LIKE="rhel fedora"
[2025-11-23 08:41:53] VERSION_ID="7"
[2025-11-23 08:41:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 08:41:53] ANSI_COLOR="0;31"
[2025-11-23 08:41:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 08:41:53] HOME_URL="https://www.centos.org/"
[2025-11-23 08:41:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 08:41:53] 
[2025-11-23 08:41:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 08:41:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 08:41:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 08:41:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 08:41:53] 
[2025-11-23 08:41:53] 2025-11-23 07:41:01,145 | INFO     | ***************************************
[2025-11-23 08:41:53] 2025-11-23 07:41:01,649 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-23 08:41:53] 2025-11-23 07:41:01,662 | INFO     | sufficient remaining disk space (827226849280 B)
[2025-11-23 08:41:53] 2025-11-23 07:41:01,662 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 08:41:53] 2025-11-23 07:41:01,662 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 08:41:53] 2025-11-23 07:41:01,662 | INFO     | update_server=False
[2025-11-23 08:41:53] 2025-11-23 07:41:01,662 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 08:41:53] 2025-11-23 07:41:01,663 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 08:41:53] 2025-11-23 07:41:01,663 | INFO     | aborting loop
[2025-11-23 08:41:53] 2025-11-23 07:41:01,663 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 08:41:53] 2025-11-23 07:41:01,898 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 08:41:53] 2025-11-23 07:41:01,942 | INFO     | all job control threads have been joined
[2025-11-23 08:41:53] 2025-11-23 07:41:02,668 | INFO     | [job] queue monitor thread has finished
[2025-11-23 08:41:53] 2025-11-23 07:41:02,669 | INFO     | [job] retrieve thread has finished
[2025-11-23 08:41:53] 2025-11-23 07:41:02,669 | INFO     | [job] job monitor thread has finished
[2025-11-23 08:41:53] 2025-11-23 07:41:02,717 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 08:41:53] 2025-11-23 07:41:02,718 | INFO     | [data] copytool_in thread has finished
[2025-11-23 08:41:53] 2025-11-23 07:41:02,743 | INFO     | all data control threads have been joined
[2025-11-23 08:41:53] 2025-11-23 07:41:02,912 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 08:41:53] 2025-11-23 07:41:02,947 | INFO     | [job] control thread has finished
[2025-11-23 08:41:53] 2025-11-23 07:41:03,114 | INFO     | all payload control threads have been joined
[2025-11-23 08:41:53] 2025-11-23 07:41:03,562 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 08:41:53] 2025-11-23 07:41:03,654 | INFO     | [payload] validate_post thread has finished
[2025-11-23 08:41:53] 2025-11-23 07:41:03,749 | INFO     | [data] control thread has finished
[2025-11-23 08:41:53] 2025-11-23 07:41:03,905 | INFO     | [data] copytool_out thread has finished
[2025-11-23 08:41:53] 2025-11-23 07:41:04,064 | INFO     | [job] validate thread has finished
[2025-11-23 08:41:53] 2025-11-23 07:41:04,120 | INFO     | [payload] control thread has finished
[2025-11-23 08:41:53] 2025-11-23 07:41:04,154 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 08:41:53] 2025-11-23 07:41:04,237 | INFO     | [payload] failed_post thread has finished
[2025-11-23 08:41:53] 2025-11-23 07:41:04,717 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 08:41:53] 2025-11-23 07:41:08,724 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 08:41:53] 2025-11-23 07:41:32,239 | INFO     | PID=2539062 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 08:41:53] 2025-11-23 07:41:32,239 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 08:41:53] 2025-11-23 07:41:32,239 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 08:41:53] 2025-11-23 07:41:32,239 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 08:41:53] 2025-11-23 07:41:47,358 | INFO     | [monitor] cgroup control has ended
[2025-11-23 08:41:53] 2025-11-23 07:41:48,478 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140142408542016)>', '<ExcThread(monitor, started 140142056548096)>']
[2025-11-23 08:41:53] 2025-11-23 07:41:49,328 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 08:41:53] 2025-11-23 07:41:49,329 | INFO     | [monitor] control thread has ended
[2025-11-23 08:41:53] 2025-11-23 07:41:53,503 | INFO     | all workflow threads have been joined
[2025-11-23 08:41:53] 2025-11-23 07:41:53,504 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 08:41:53] 2025-11-23 07:41:53,504 | INFO     | traces error code: 0
[2025-11-23 08:41:53] 2025-11-23 07:41:53,505 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 08:41:53] 2025-11-23 07:41:53,550 [wrapper] ==== pilot stdout END ====
[2025-11-23 08:41:53] 2025-11-23 07:41:53,553 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 08:41:53] 2025-11-23 07:41:53,556 [wrapper] pilotpid: 2539062
[2025-11-23 08:41:53] 2025-11-23 07:41:53,559 [wrapper] Pilot exit status: 0
[2025-11-23 08:41:53] 2025-11-23 07:41:53,566 [wrapper] pandaids: 6895338465
[2025-11-23 08:41:53] 2025-11-23 07:41:53,581 [wrapper] cleanup supervisor_pilot 2539068 2539063
[2025-11-23 08:41:53] 2025-11-23 07:41:53,584 [wrapper] Test setup, not cleaning
[2025-11-23 08:41:53] 2025-11-23 07:41:53,587 [wrapper] apfmon messages muted
[2025-11-23 08:41:53] 2025-11-23 07:41:53,589 [wrapper] ==== wrapper stdout END ====
[2025-11-23 08:41:53] 2025-11-23 07:41:53,592 [wrapper] ==== wrapper stderr END ====
[2025-11-23 08:41:53]  *** Error codes and diagnostics ***
[2025-11-23 08:41:53]     "exeErrorCode": 65,
[2025-11-23 08:41:53]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 08:41:53]     "pilotErrorCode": 1305,
[2025-11-23 08:41:53]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 08:41:53]  *** Listing of results directory ***
[2025-11-23 08:41:53] total 406384
[2025-11-23 08:41:53] -rw-r--r-- 1 boinc boinc    576529 Nov 22 10:00 pilot3.tar.gz
[2025-11-23 08:41:53] -rw-r--r-- 1 boinc boinc      5112 Nov 22 10:22 queuedata.json
[2025-11-23 08:41:53] -rwx------ 1 boinc boinc     36292 Nov 22 10:23 runpilot2-wrapper.sh
[2025-11-23 08:41:53] -rw-r--r-- 1 boinc boinc       100 Nov 23 08:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 08:41:53] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 08:37 run_atlas
[2025-11-23 08:41:53] -rw-r--r-- 1 boinc boinc       105 Nov 23 08:37 job.xml
[2025-11-23 08:41:53] -rw-r--r-- 2 boinc boinc 411939139 Nov 23 08:37 EVNT.47483658._000327.pool.root.1
[2025-11-23 08:41:53] -rw-r--r-- 2 boinc boinc    590105 Nov 23 08:37 input.tar.gz
[2025-11-23 08:41:53] -rw-r--r-- 2 boinc boinc     15847 Nov 23 08:37 start_atlas.sh
[2025-11-23 08:41:53] drwxrwx--x 2 boinc boinc      4096 Nov 23 08:37 shared
[2025-11-23 08:41:53] -rw-r--r-- 1 boinc boinc         0 Nov 23 08:37 boinc_setup_complete
[2025-11-23 08:41:53] -rw-r--r-- 1 boinc boinc      6194 Nov 23 08:37 init_data.xml
[2025-11-23 08:41:53] -rw-r--r-- 1 boinc boinc         0 Nov 23 08:37 boinc_lockfile
[2025-11-23 08:41:53] -rw-r--r-- 1 boinc boinc      2784 Nov 23 08:37 pandaJob.out
[2025-11-23 08:41:53] -rw------- 1 boinc boinc    989784 Nov 23 08:37 agis_schedconf.cvmfs.json
[2025-11-23 08:41:53] -rw------- 1 boinc boinc   1526164 Nov 23 08:37 agis_ddmendpoints.agis.ALL.json
[2025-11-23 08:41:53] drwx------ 5 boinc boinc      4096 Nov 23 08:37 pilot3
[2025-11-23 08:41:53] -rw-r--r-- 1 boinc boinc       523 Nov 23 08:38 boinc_task_state.xml
[2025-11-23 08:41:53] -rw------- 1 boinc boinc       965 Nov 23 08:38 memory_monitor_summary.json
[2025-11-23 08:41:53] -rw------- 1 boinc boinc     55710 Nov 23 08:38 log.47556137._003240.job.log.tgz.1
[2025-11-23 08:41:53] -rw------- 1 boinc boinc        95 Nov 23 08:40 pilot_heartbeat.json
[2025-11-23 08:41:53] -rw------- 1 boinc boinc      8399 Nov 23 08:40 heartbeat.json
[2025-11-23 08:41:53] -rw-r--r-- 1 boinc boinc      8192 Nov 23 08:41 boinc_mmap_file
[2025-11-23 08:41:53] -rw-r--r-- 1 boinc boinc        23 Nov 23 08:41 wrapper_checkpoint.txt
[2025-11-23 08:41:53] -rw------- 1 boinc boinc      4752 Nov 23 08:41 pilotlog.txt
[2025-11-23 08:41:53] -rw------- 1 boinc boinc     92186 Nov 23 08:41 log.47556137._003240.job.log.1
[2025-11-23 08:41:53] -rw------- 1 boinc boinc       186 Nov 23 08:41 output.list
[2025-11-23 08:41:53] -rw-r--r-- 1 boinc boinc       620 Nov 23 08:41 runtime_log
[2025-11-23 08:41:53] -rw------- 1 boinc boinc    163840 Nov 23 08:41 result.tar.gz
[2025-11-23 08:41:53] -rw-r--r-- 1 boinc boinc      8744 Nov 23 08:41 runtime_log.err
[2025-11-23 08:41:53] -rw------- 1 boinc boinc       649 Nov 23 08:41 2i9NDmL1yg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmF5JKDmIHM2Cn.diag
[2025-11-23 08:41:53] -rw-r--r-- 1 boinc boinc      9074 Nov 23 08:41 stderr.txt
[2025-11-23 08:41:53] No HITS result produced
[2025-11-23 08:41:53]  *** Contents of shared directory: ***
[2025-11-23 08:41:53] total 403048
[2025-11-23 08:41:53] -rw-r--r-- 2 boinc boinc 411939139 Nov 23 08:37 ATLAS.root_0
[2025-11-23 08:41:53] -rw-r--r-- 2 boinc boinc    590105 Nov 23 08:37 input.tar.gz
[2025-11-23 08:41:53] -rw-r--r-- 2 boinc boinc     15847 Nov 23 08:37 start_atlas.sh
[2025-11-23 08:41:53] -rw------- 1 boinc boinc    163840 Nov 23 08:41 result.tar.gz
08:41:54 (2535323): run_atlas exited; CPU time 31.438872
08:41:54 (2535323): called boinc_finish(0)

</stderr_txt>
]]>

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