Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-25 18:11:35 (1900): vboxwrapper version 26210
2025-11-25 18:11:35 (1900): BOINC client version: 7.24.1
2025-11-25 18:11:36 (1900): Detected: VirtualBox VboxManage Interface (Version: 7.0.10)
2025-11-25 18:11:36 (1900): Successfully copied 'init_data.xml' to the shared directory.
2025-11-25 18:11:36 (1900): Create VM. (boinc_829961a90ee39bcb, slot#0)
2025-11-25 18:11:37 (1900): Setting Memory Size for VM. (4800MB)
2025-11-25 18:11:37 (1900): Setting CPU Count for VM. (8)
2025-11-25 18:11:37 (1900): Setting Chipset Options for VM.
2025-11-25 18:11:37 (1900): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-25 18:11:38 (1900): Setting Boot Options for VM.
2025-11-25 18:11:38 (1900): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-25 18:11:38 (1900): Enabling VM Network Access.
2025-11-25 18:11:39 (1900): Disabling USB Support for VM.
2025-11-25 18:11:39 (1900): Disabling COM Port Support for VM.
2025-11-25 18:11:39 (1900): Disabling LPT Port Support for VM.
2025-11-25 18:11:39 (1900): Disabling Audio Support for VM.
2025-11-25 18:11:40 (1900): Disabling Clipboard Support for VM.
2025-11-25 18:11:40 (1900): Disabling Drag and Drop Support for VM.
2025-11-25 18:11:40 (1900): Adding storage controller(s) to VM.
2025-11-25 18:11:40 (1900): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-25 18:11:43 (1900): Adding VirtualBox Guest Additions to VM.
2025-11-25 18:11:43 (1900): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-25 18:11:43 (1900): forwarding host port 64415 to guest port 80
2025-11-25 18:11:43 (1900): Enabling remote desktop for VM.
2025-11-25 18:11:44 (1900): Required extension pack not installed, remote desktop not enabled.
2025-11-25 18:11:44 (1900): Enabling shared directory for VM.
2025-11-25 18:11:44 (1900): Starting VM using VBoxManage interface. (boinc_829961a90ee39bcb, slot#0)
2025-11-25 18:11:50 (1900): Successfully started VM. (PID = '6416')
2025-11-25 18:11:50 (1900): Reporting VM Process ID to BOINC.
2025-11-25 18:11:50 (1900): Guest Log: BIOS: VirtualBox 7.0.10
2025-11-25 18:11:50 (1900): Guest Log: CPUID EDX: 0x178bfbff
2025-11-25 18:11:50 (1900): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-25 18:11:50 (1900): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-25 18:11:50 (1900): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-25 18:11:50 (1900): Detected: Web Application Enabled (http://localhost:64415)
2025-11-25 18:11:50 (1900): Preference change detected
2025-11-25 18:11:50 (1900): Setting CPU throttle for VM. (100%)
2025-11-25 18:11:50 (1900): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-25 18:11:52 (1900): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-25 18:11:52 (1900): Guest Log: BIOS: Booting from Hard Disk...
2025-11-25 18:11:54 (1900): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-25 18:11:54 (1900): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-25 18:11:54 (1900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-25 18:12:00 (1900): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-25 18:12:00 (1900): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-25 18:12:04 (1900): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-25 18:12:04 (1900): Guest Log: 00:00:00.000119 main     Log opened 2025-11-25T18:12:02.366695000Z
2025-11-25 18:12:04 (1900): Guest Log: 00:00:00.000188 main     OS Product: Linux
2025-11-25 18:12:04 (1900): Guest Log: 00:00:00.000212 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-25 18:12:04 (1900): Guest Log: 00:00:00.000231 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-25 18:12:04 (1900): Guest Log: 00:00:00.000249 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-25 18:12:04 (1900): Guest Log: 00:00:00.000249 main     Process ID: 1391
2025-11-25 18:12:04 (1900): Guest Log: 00:00:00.000250 main     Package type: LINUX_64BITS_GENERIC
2025-11-25 18:12:04 (1900): Guest Log: 00:00:00.001170 main     5.2.32 r132073 started. Verbose level = 0
2025-11-25 18:12:04 (1900): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-25 18:12:04 (1900): Guest Log: [INFO] Mounting shared directory
2025-11-25 18:12:04 (1900): Guest Log: [INFO] Checking for init_data.xml
2025-11-25 18:12:14 (1900): Guest Log: 00:00:10.007717 timesync vgsvcTimeSyncWorker: Radical guest time change: -32 388 648 897 000ns (GuestNow=1 764 061 933 720 682 000 ns GuestLast=1 764 094 322 369 579 000 ns fSetTimeLastLoop=true )
2025-11-25 18:12:16 (1900): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-25 18:12:16 (1900): Guest Log: [INFO] Detected branch: prod
2025-11-25 18:12:16 (1900): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-25 18:12:16 (1900): Guest Log: Copying input files
2025-11-25 18:12:18 (1900): Guest Log: Copied input files into RunAtlas.
2025-11-25 18:12:18 (1900): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-25 18:12:18 (1900): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-25 18:12:18 (1900): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-25 18:12:18 (1900): Guest Log: Further information can be found at the LHC@home message board.
2025-11-25 18:12:30 (1900): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-25 18:12:30 (1900): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-25 18:12:30 (1900): Guest Log: 2.6.3.0 1673 0 30136 153276 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-25 18:12:31 (1900): Guest Log: copied the webapp to /var/www
2025-11-25 18:12:31 (1900): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-25 18:12:31 (1900): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-25 18:12:32 (1900): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-25 18:12:32 (1900): Guest Log:  *** Starting ATLAS job. (PandaID=6895334535 taskID=47556149) ***
2025-11-25 19:52:36 (1900): Status Report: Elapsed Time: '6000.421455'
2025-11-25 19:52:36 (1900): Status Report: CPU Time: '34644.484375'
2025-11-25 21:33:44 (1900): Status Report: Elapsed Time: '12000.421455'
2025-11-25 21:33:44 (1900): Status Report: CPU Time: '82775.687500'
2025-11-25 23:14:52 (1900): Status Report: Elapsed Time: '18000.421455'
2025-11-25 23:14:52 (1900): Status Report: CPU Time: '130937.703125'
2025-11-26 00:56:00 (1900): Status Report: Elapsed Time: '24000.421455'
2025-11-26 00:56:00 (1900): Status Report: CPU Time: '179079.390625'
2025-11-26 02:37:10 (1900): Status Report: Elapsed Time: '30000.421455'
2025-11-26 02:37:10 (1900): Status Report: CPU Time: '227256.312500'
2025-11-26 04:19:07 (1900): Status Report: Elapsed Time: '36001.058455'
2025-11-26 04:19:07 (1900): Status Report: CPU Time: '275686.984375'
2025-11-26 06:00:16 (1900): Status Report: Elapsed Time: '42001.058455'
2025-11-26 06:00:16 (1900): Status Report: CPU Time: '323866.359375'
2025-11-26 06:40:01 (1900): Guest Log:  *** Job finished ***
2025-11-26 06:40:01 (1900): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:39:49,519 | INFO     | all workflow threads have been joined
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:39:49,519 | INFO     | end of generic workflow (traces error code: 0)
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:39:49,519 | INFO     | traces error code: 0
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:39:49,519 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:40:00,589 | INFO     | PID=6132 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:40:00,590 | INFO     | found 0 job(s) in 20 queues
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:40:00,590 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:40:00,590 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:40:00,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:40:00,590 | INFO     | [monitor] control thread has ended
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:40:00,657 [wrapper] ==== pilot stdout END ====
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:40:00,660 [wrapper] ==== wrapper stdout RESUME ====
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:40:00,663 [wrapper] pilotpid: 6132
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:40:00,667 [wrapper] Pilot exit status: 0
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:40:00,678 [wrapper] pandaids: 6895334535
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:40:00,700 [wrapper] cleanup supervisor_pilot 22963 6133
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:40:00,704 [wrapper] Test setup, not cleaning
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:40:00,708 [wrapper] apfmon messages muted
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:40:00,711 [wrapper] ==== wrapper stdout END ====
2025-11-26 06:40:01 (1900): Guest Log: 2025-11-25 21:40:00,715 [wrapper] ==== wrapper stderr END ====
2025-11-26 06:40:01 (1900): Guest Log:  *** Error codes and diagnostics ***
2025-11-26 06:40:01 (1900): Guest Log:     "exeErrorCode": 0,
2025-11-26 06:40:01 (1900): Guest Log:     "exeErrorDiag": "",
2025-11-26 06:40:01 (1900): Guest Log:     "pilotErrorCode": 0,
2025-11-26 06:40:01 (1900): Guest Log:     "pilotErrorDiag": "",
2025-11-26 06:40:01 (1900): Guest Log:  *** Listing of results directory ***
2025-11-26 06:40:01 (1900): Guest Log: total 926468
2025-11-26 06:40:01 (1900): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 03:55 pilot3.tar.gz
2025-11-26 06:40:01 (1900): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 22 03:57 queuedata.json
2025-11-26 06:40:01 (1900): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 22 03:58 runpilot2-wrapper.sh
2025-11-26 06:40:01 (1900): Guest Log: -rwxr-xr-x. 1 atlas atlas      6093 Nov 25 09:12 init_data.xml
2025-11-26 06:40:01 (1900): Guest Log: -rwxr-xr-x. 1 atlas atlas    590101 Nov 25 09:12 input.tar.gz
2025-11-26 06:40:01 (1900): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 25 09:12 start_atlas.sh
2025-11-26 06:40:01 (1900): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 25 09:12 EVNT.47483658._001062.pool.root.1 -> /data/./ATLAS.root_0
2025-11-26 06:40:01 (1900): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 25 09:12 pandaJob.out
2025-11-26 06:40:01 (1900): Guest Log: -rw-------. 1 atlas atlas    991858 Nov 25 09:16 agis_schedconf.cvmfs.json
2025-11-26 06:40:01 (1900): Guest Log: drwx------. 5 atlas atlas      4096 Nov 25 09:16 pilot3
2025-11-26 06:40:01 (1900): Guest Log: -rw-------. 1 atlas atlas 929279400 Nov 25 21:38 HITS.47556149._000488.pool.root.1
2025-11-26 06:40:01 (1900): Guest Log: -rw-------. 1 atlas atlas      1042 Nov 25 21:39 memory_monitor_summary.json
2025-11-26 06:40:01 (1900): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 25 21:39 agis_ddmendpoints.agis.ALL.json
2025-11-26 06:40:01 (1900): Guest Log: -rw-------. 1 atlas atlas   1947015 Nov 25 21:39 log.47556149._000488.job.log.tgz.1
2025-11-26 06:40:01 (1900): Guest Log: -rw-------. 1 atlas atlas      8668 Nov 25 21:39 heartbeat.json
2025-11-26 06:40:01 (1900): Guest Log: -rw-------. 1 atlas atlas        95 Nov 25 21:40 pilot_heartbeat.json
2025-11-26 06:40:01 (1900): Guest Log: -rw-------. 1 atlas atlas       744 Nov 25 21:40 pilotlog.txt
2025-11-26 06:40:01 (1900): Guest Log: -rw-------. 1 atlas atlas   5843890 Nov 25 21:40 log.47556149._000488.job.log.1
2025-11-26 06:40:01 (1900): Guest Log: -rw-------. 1 atlas atlas       353 Nov 25 21:40 output.list
2025-11-26 06:40:01 (1900): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 25 21:40 runtime_log
2025-11-26 06:40:01 (1900): Guest Log: -rw-------. 1 atlas atlas   7813120 Nov 25 21:40 result.tar.gz
2025-11-26 06:40:01 (1900): Guest Log: -rw-r--r--. 1 atlas atlas      8762 Nov 25 21:40 runtime_log.err
2025-11-26 06:40:01 (1900): Guest Log: -rw-------. 1 atlas atlas       666 Nov 25 21:40 iU4LDmjwtg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6uJKDmsa29On.diag
2025-11-26 06:40:01 (1900): Guest Log: Looking for outputfile HITS.47556149._000488.pool.root.1
2025-11-26 06:40:01 (1900): Guest Log: HITS file was successfully produced
2025-11-26 06:40:01 (1900): Guest Log: -rw-------. 1 atlas atlas 929279400 Nov 25 21:38 /home/atlas/RunAtlas/HITS.47556149._000488.pool.root.1
2025-11-26 06:40:04 (1900): Guest Log: Successfully finished the ATLAS job!
2025-11-26 06:40:04 (1900): Guest Log: Copying the results back to the shared directory!
2025-11-26 06:40:04 (1900): Guest Log:  *** Contents of shared directory: ***
2025-11-26 06:40:04 (1900): Guest Log: total 1317668
2025-11-26 06:40:04 (1900): Guest Log: -rwxrwxrwx. 1 root root 411576593 Nov 25 09:11 ATLAS.root_0
2025-11-26 06:40:04 (1900): Guest Log: -rwxrwxrwx. 1 root root 929279400 Nov 25 21:40 HITS.pool.root.1
2025-11-26 06:40:04 (1900): Guest Log: -rwxrwxrwx. 1 root root      6093 Nov 25 09:11 init_data.xml
2025-11-26 06:40:04 (1900): Guest Log: -rwxrwxrwx. 1 root root    590101 Nov 23 02:41 input.tar.gz
2025-11-26 06:40:04 (1900): Guest Log: -rwxrwxrwx. 1 root root   7813120 Nov 25 21:40 result.tar.gz
2025-11-26 06:40:04 (1900): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 23 02:41 start_atlas.sh
2025-11-26 06:40:04 (1900): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-26 06:40:05 (1900): VM Completion File Detected.
2025-11-26 06:40:05 (1900): Powering off VM.
2025-11-26 06:40:05 (1900): Successfully stopped VM.
2025-11-26 06:40:05 (1900): Deregistering VM. (boinc_829961a90ee39bcb, slot#0)
2025-11-26 06:40:05 (1900): Removing network bandwidth throttle group from VM.
2025-11-26 06:40:05 (1900): Removing VM from VirtualBox.
2025-11-26 06:40:11 (1900): called boinc_finish(0)

</stderr_txt>
]]>

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