Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:53:45 (26438): wrapper (7.7.26015): starting
19:53:45 (26438): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 19:53:45] Arguments: --nthreads 8
[2025-11-22 19:53:45] Threads: 8
[2025-11-22 19:53:45] Checking for CVMFS
[2025-11-22 19:53:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 19:53:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 19:53:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 19:53:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 19:53:46] 2.11.2.0 2830 43850 84672 153191 3 81 11196792 20275200 1 130560 0 7364014 99.676 2836244 26992 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 19:53:46] CVMFS is ok
[2025-11-22 19:53:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 19:53:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 19:53:46] Further information can be found at the LHC@home message board.
[2025-11-22 19:53:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 19:53:46] Checking for apptainer binary...
[2025-11-22 19:53:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 19:53:46] Running /usr/bin/apptainer --version
[2025-11-22 19:53:46] apptainer version 1.3.2-1.el7
[2025-11-22 19:53:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 19:53:47] c-204-5.aglt2.org
[2025-11-22 19:53:47] apptainer works
[2025-11-22 19:53:47] Set ATHENA_PROC_NUMBER=8
[2025-11-22 19:53:47] Set ATHENA_CORE_NUMBER=8
[2025-11-22 19:53:47] Starting ATLAS job with PandaID=6895334148
[2025-11-22 19:53:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 08:21:41]  *** The last 200 lines of the pilot log: ***
[2025-11-23 08:21:41] 2025-11-23 13:21:08,033 | INFO     | time since job start (44824s) is within the limit (172800.0s)
[2025-11-23 08:21:41] 2025-11-23 13:21:08,119 | INFO     | monitor loop #3303: job 0:6895334148 is in state 'finished'
[2025-11-23 08:21:41] 2025-11-23 13:21:08,120 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:21:41] 2025-11-23 13:21:09,085 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 08:21:41] 2025-11-23 13:21:09,089 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-23 08:21:41] 2025-11-23 13:21:09,091 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895334148/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 08:21:41] 2025-11-23 13:21:09,092 | INFO     | extracted standard info from prmon json
[2025-11-23 08:21:41] 2025-11-23 13:21:09,092 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 08:21:41] 2025-11-23 13:21:09,092 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 08:21:41] 2025-11-23 13:21:09,105 | INFO     | fitting pss+swap vs Time
[2025-11-23 08:21:41] 2025-11-23 13:21:09,106 | INFO     | sum of square deviations: 123123489649.74144
[2025-11-23 08:21:41] 2025-11-23 13:21:09,117 | INFO     | sum of deviations: 821677417061.4758
[2025-11-23 08:21:41] 2025-11-23 13:21:09,117 | INFO     | mean x: 1763881663.4965987
[2025-11-23 08:21:41] 2025-11-23 13:21:09,117 | INFO     | mean y: 2948240.7904761904
[2025-11-23 08:21:41] 2025-11-23 13:21:09,118 | INFO     | intersect: -11768499542.138962
[2025-11-23 08:21:41] 2025-11-23 13:21:09,118 | INFO     | chi2: 6.683254692784927
[2025-11-23 08:21:41] 2025-11-23 13:21:09,120 | INFO     | sum of square deviations: 120627935576.0
[2025-11-23 08:21:41] 2025-11-23 13:21:09,131 | INFO     | sum of deviations: 1097458378560.0002
[2025-11-23 08:21:41] 2025-11-23 13:21:09,131 | INFO     | mean x: 1763881511.0
[2025-11-23 08:21:41] 2025-11-23 13:21:09,131 | INFO     | mean y: 2965095.1191780823
[2025-11-23 08:21:41] 2025-11-23 13:21:09,131 | INFO     | intersect: -16044615706.049444
[2025-11-23 08:21:41] 2025-11-23 13:21:09,132 | INFO     | chi2: 3.0092378924311842
[2025-11-23 08:21:41] 2025-11-23 13:21:09,132 | INFO     | current chi2=3.0092378924311842 (change=54.97346680981825 %)
[2025-11-23 08:21:41] 2025-11-23 13:21:09,133 | INFO     | sum of square deviations: 118166335627.24138
[2025-11-23 08:21:41] 2025-11-23 13:21:09,143 | INFO     | sum of deviations: 1170953805481.1584
[2025-11-23 08:21:41] 2025-11-23 13:21:09,144 | INFO     | mean x: 1763881358.5034482
[2025-11-23 08:21:41] 2025-11-23 13:21:09,144 | INFO     | mean y: 2969638.736551724
[2025-11-23 08:21:41] 2025-11-23 13:21:09,144 | INFO     | intersect: -17475981351.77497
[2025-11-23 08:21:41] 2025-11-23 13:21:09,145 | INFO     | chi2: 2.571357805228798
[2025-11-23 08:21:41] 2025-11-23 13:21:09,145 | INFO     | current chi2=2.571357805228798 (change=14.55119544731705 %)
[2025-11-23 08:21:41] 2025-11-23 13:21:09,145 | INFO     | right removable region: 724
[2025-11-23 08:21:41] 2025-11-23 13:21:09,146 | INFO     | sum of square deviations: 120627712926.0
[2025-11-23 08:21:41] 2025-11-23 13:21:09,156 | INFO     | sum of deviations: 610582861333.9996
[2025-11-23 08:21:41] 2025-11-23 13:21:09,157 | INFO     | mean x: 1763881816.0
[2025-11-23 08:21:41] 2025-11-23 13:21:09,157 | INFO     | mean y: 2961117.4452054794
[2025-11-23 08:21:41] 2025-11-23 13:21:09,157 | INFO     | intersect: -8925302381.415815
[2025-11-23 08:21:41] 2025-11-23 13:21:09,158 | INFO     | chi2: 4.313833615109971
[2025-11-23 08:21:41] 2025-11-23 13:21:09,158 | INFO     | current chi2=4.313833615109971 (change=35.453101618780494 %)
[2025-11-23 08:21:41] 2025-11-23 13:21:09,159 | INFO     | sum of square deviations: 118165979509.24965
[2025-11-23 08:21:41] 2025-11-23 13:21:09,169 | INFO     | sum of deviations: 566837289446.5482
[2025-11-23 08:21:41] 2025-11-23 13:21:09,170 | INFO     | mean x: 1763881968.5006897
[2025-11-23 08:21:41] 2025-11-23 13:21:09,170 | INFO     | mean y: 2963825.9048275864
[2025-11-23 08:21:41] 2025-11-23 13:21:09,170 | INFO     | intersect: -8458304621.079179
[2025-11-23 08:21:41] 2025-11-23 13:21:09,171 | INFO     | chi2: 4.272988942665863
[2025-11-23 08:21:41] 2025-11-23 13:21:09,171 | INFO     | current chi2=4.272988942665863 (change=0.9468300376964389 %)
[2025-11-23 08:21:41] 2025-11-23 13:21:09,171 | INFO     | left removable region: 20
[2025-11-23 08:21:41] 2025-11-23 13:21:09,172 | INFO     | sum of square deviations: 108192388003.85786
[2025-11-23 08:21:41] 2025-11-23 13:21:09,182 | INFO     | sum of deviations: 866516252120.6962
[2025-11-23 08:21:41] 2025-11-23 13:21:09,182 | INFO     | mean x: 1763881938.0142045
[2025-11-23 08:21:41] 2025-11-23 13:21:09,182 | INFO     | mean y: 2989063.930397727
[2025-11-23 08:21:41] 2025-11-23 13:21:09,182 | INFO     | intersect: -14123997079.096214
[2025-11-23 08:21:41] 2025-11-23 13:21:09,183 | INFO     | chi2: 0.11463536205647293
[2025-11-23 08:21:41] 2025-11-23 13:21:09,183 | INFO     | current memory leak: 8.01 B/s (using 704 data points, chi2=0.11)
[2025-11-23 08:21:41] 2025-11-23 13:21:09,183 | INFO     | could have reported an average CPU frequency of 2178 MHz (28 samples)
[2025-11-23 08:21:41] 2025-11-23 13:21:09,184 | INFO     | ..............................
[2025-11-23 08:21:41] 2025-11-23 13:21:09,184 | INFO     | . Timing measurements:
[2025-11-23 08:21:41] 2025-11-23 13:21:09,184 | INFO     | . get job = 0 s
[2025-11-23 08:21:41] 2025-11-23 13:21:09,184 | INFO     | . initial setup = 2 s
[2025-11-23 08:21:41] 2025-11-23 13:21:09,184 | INFO     | . payload setup = 8 s
[2025-11-23 08:21:41] 2025-11-23 13:21:09,184 | INFO     | . stage-in = 0 s
[2025-11-23 08:21:41] 2025-11-23 13:21:09,184 | INFO     | . payload execution = 44783 s
[2025-11-23 08:21:41] 2025-11-23 13:21:09,184 | INFO     | . stage-out = 3 s
[2025-11-23 08:21:41] 2025-11-23 13:21:09,185 | INFO     | . log creation = 0 s
[2025-11-23 08:21:41] 2025-11-23 13:21:09,185 | INFO     | ..............................
[2025-11-23 08:21:41] 2025-11-23 13:21:09,277 | INFO     | 
[2025-11-23 08:21:41] 2025-11-23 13:21:09,278 | INFO     | job summary report
[2025-11-23 08:21:41] 2025-11-23 13:21:09,278 | INFO     | --------------------------------------------------
[2025-11-23 08:21:41] 2025-11-23 13:21:09,278 | INFO     | PanDA job id: 6895334148
[2025-11-23 08:21:41] 2025-11-23 13:21:09,278 | INFO     | task id: 47556137
[2025-11-23 08:21:41] 2025-11-23 13:21:09,278 | INFO     | errors: (none)
[2025-11-23 08:21:41] 2025-11-23 13:21:09,278 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 08:21:41] 2025-11-23 13:21:09,278 | INFO     | pilot state: finished 
[2025-11-23 08:21:41] 2025-11-23 13:21:09,279 | INFO     | transexitcode: 0
[2025-11-23 08:21:41] 2025-11-23 13:21:09,279 | INFO     | exeerrorcode: 0
[2025-11-23 08:21:41] 2025-11-23 13:21:09,279 | INFO     | exeerrordiag: 
[2025-11-23 08:21:41] 2025-11-23 13:21:09,279 | INFO     | exitcode: 0
[2025-11-23 08:21:41] 2025-11-23 13:21:09,279 | INFO     | exitmsg: OK
[2025-11-23 08:21:41] 2025-11-23 13:21:09,279 | INFO     | cpuconsumptiontime: 345641 s
[2025-11-23 08:21:41] 2025-11-23 13:21:09,279 | INFO     | nevents: 1000
[2025-11-23 08:21:41] 2025-11-23 13:21:09,279 | INFO     | neventsw: 0
[2025-11-23 08:21:41] 2025-11-23 13:21:09,280 | INFO     | pid: 5275
[2025-11-23 08:21:41] 2025-11-23 13:21:09,280 | INFO     | pgrp: 5275
[2025-11-23 08:21:41] 2025-11-23 13:21:09,280 | INFO     | corecount: 8
[2025-11-23 08:21:41] 2025-11-23 13:21:09,280 | INFO     | event service: False
[2025-11-23 08:21:41] 2025-11-23 13:21:09,280 | INFO     | sizes: {0: 2298635, 1: 2298834, 6: 2299096, 11: 2299124, 44796: 2345020, 44801: 2354198, 44807: 2354388}
[2025-11-23 08:21:41] 2025-11-23 13:21:09,280 | INFO     | --------------------------------------------------
[2025-11-23 08:21:41] 2025-11-23 13:21:09,280 | INFO     | 
[2025-11-23 08:21:41] 2025-11-23 13:21:09,280 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 08:21:41] 2025-11-23 13:21:09,306 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,307 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,307 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,307 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,307 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,307 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,308 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,308 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,308 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,308 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,308 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,308 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,309 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,309 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,309 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,309 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,309 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,310 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 08:21:41] 2025-11-23 13:21:09,310 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,310 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 08:21:41] 2025-11-23 13:21:09,310 | INFO     | job 6895334148 has completed (purged errors)
[2025-11-23 08:21:41] 2025-11-23 13:21:09,310 | INFO     | overall cleanup function is called
[2025-11-23 08:21:41] 2025-11-23 13:21:10,327 | INFO     | --- collectZombieJob: --- 10, [5275]
[2025-11-23 08:21:41] 2025-11-23 13:21:10,327 | INFO     | zombie collector waiting for pid 5275
[2025-11-23 08:21:41] 2025-11-23 13:21:10,327 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 08:21:41] 2025-11-23 13:21:10,328 | INFO     | collected zombie processes
[2025-11-23 08:21:41] 2025-11-23 13:21:10,328 | INFO     | will attempt to kill all subprocesses of pid=5275
[2025-11-23 08:21:41] 2025-11-23 13:21:10,416 | INFO     | process IDs to be killed: [5275] (in reverse order)
[2025-11-23 08:21:41] 2025-11-23 13:21:10,567 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 08:21:41] 2025-11-23 13:21:10,568 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 08:21:41] 2025-11-23 13:21:10,572 | INFO     | did not find any defunct processes belonging to 5275
[2025-11-23 08:21:41] 2025-11-23 13:21:10,575 | INFO     | did not find any defunct processes belonging to 5275
[2025-11-23 08:21:41] 2025-11-23 13:21:10,577 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 08:21:41] 2025-11-23 13:21:10,578 | INFO     | ready for new job
[2025-11-23 08:21:41] 2025-11-23 13:21:10,578 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 08:21:41] 2025-11-23 13:21:10,582 | INFO     | ***************************************
[2025-11-23 08:21:41] 2025-11-23 13:21:10,582 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 08:21:41] 2025-11-23 13:21:10,582 | INFO     | ***************************************
[2025-11-23 08:21:41] 2025-11-23 13:21:10,582 | INFO     | 
[2025-11-23 08:21:41] 2025-11-23 13:21:10,583 | INFO     | architecture information:
[2025-11-23 08:21:41] 2025-11-23 13:21:10,584 | INFO     | executing command: cat /etc/os-release
[2025-11-23 08:21:41] 2025-11-23 13:21:10,601 | INFO     | cat /etc/os-release:
[2025-11-23 08:21:41] NAME="CentOS Linux"
[2025-11-23 08:21:41] VERSION="7 (Core)"
[2025-11-23 08:21:41] ID="centos"
[2025-11-23 08:21:41] ID_LIKE="rhel fedora"
[2025-11-23 08:21:41] VERSION_ID="7"
[2025-11-23 08:21:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 08:21:41] ANSI_COLOR="0;31"
[2025-11-23 08:21:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 08:21:41] HOME_URL="https://www.centos.org/"
[2025-11-23 08:21:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 08:21:41] 
[2025-11-23 08:21:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 08:21:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 08:21:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 08:21:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 08:21:41] 
[2025-11-23 08:21:41] 2025-11-23 13:21:10,601 | INFO     | ***************************************
[2025-11-23 08:21:41] 2025-11-23 13:21:11,104 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 08:21:41] 2025-11-23 13:21:11,124 | INFO     | sufficient remaining disk space (17477664768 B)
[2025-11-23 08:21:41] 2025-11-23 13:21:11,125 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 08:21:41] 2025-11-23 13:21:11,125 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 08:21:41] 2025-11-23 13:21:11,126 | INFO     | update_server=False
[2025-11-23 08:21:41] 2025-11-23 13:21:11,126 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 08:21:41] 2025-11-23 13:21:11,126 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 08:21:41] 2025-11-23 13:21:11,126 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 08:21:41] 2025-11-23 13:21:11,491 | INFO     | all data control threads have been joined
[2025-11-23 08:21:41] 2025-11-23 13:21:11,639 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 08:21:41] 2025-11-23 13:21:11,639 | INFO     | aborting loop
[2025-11-23 08:21:41] 2025-11-23 13:21:11,938 | INFO     | all payload control threads have been joined
[2025-11-23 08:21:41] 2025-11-23 13:21:12,086 | INFO     | all job control threads have been joined
[2025-11-23 08:21:41] 2025-11-23 13:21:12,131 | INFO     | [job] retrieve thread has finished
[2025-11-23 08:21:41] 2025-11-23 13:21:12,132 | INFO     | [job] queue monitor thread has finished
[2025-11-23 08:21:41] 2025-11-23 13:21:12,385 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 08:21:41] 2025-11-23 13:21:12,497 | INFO     | [data] control thread has finished
[2025-11-23 08:21:41] 2025-11-23 13:21:12,644 | INFO     | [job] job monitor thread has finished
[2025-11-23 08:21:41] 2025-11-23 13:21:12,919 | INFO     | [job] validate thread has finished
[2025-11-23 08:21:41] 2025-11-23 13:21:12,940 | INFO     | [payload] control thread has finished
[2025-11-23 08:21:41] 2025-11-23 13:21:12,957 | INFO     | [payload] failed_post thread has finished
[2025-11-23 08:21:41] 2025-11-23 13:21:13,002 | INFO     | [data] copytool_in thread has finished
[2025-11-23 08:21:41] 2025-11-23 13:21:13,004 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 08:21:41] 2025-11-23 13:21:13,087 | INFO     | [job] control thread has finished
[2025-11-23 08:21:41] 2025-11-23 13:21:13,128 | INFO     | [data] copytool_out thread has finished
[2025-11-23 08:21:41] 2025-11-23 13:21:13,336 | INFO     | [payload] validate_post thread has finished
[2025-11-23 08:21:41] 2025-11-23 13:21:13,515 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 08:21:41] 2025-11-23 13:21:13,604 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 08:21:41] 2025-11-23 13:21:17,521 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 08:21:41] 2025-11-23 13:21:18,437 | INFO     | [monitor] cgroup control has ended
[2025-11-23 08:21:41] 2025-11-23 13:21:21,793 | INFO     | job.realtimelogging is not enabled
[2025-11-23 08:21:41] 2025-11-23 13:21:22,797 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 08:21:41] 2025-11-23 13:21:23,389 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140502426335040)>', '<ExcThread(monitor, started 140501307082496)>']
[2025-11-23 08:21:41] 2025-11-23 13:21:28,414 | INFO     | all workflow threads have been joined
[2025-11-23 08:21:41] 2025-11-23 13:21:28,414 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 08:21:41] 2025-11-23 13:21:28,415 | INFO     | traces error code: 0
[2025-11-23 08:21:41] 2025-11-23 13:21:28,415 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 08:21:41] 2025-11-23 13:21:41,252 | INFO     | PID=30135 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 08:21:41] 2025-11-23 13:21:41,252 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 08:21:41] 2025-11-23 13:21:41,252 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 08:21:41] 2025-11-23 13:21:41,252 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 08:21:41] 2025-11-23 13:21:41,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 08:21:41] 2025-11-23 13:21:41,253 | INFO     | [monitor] control thread has ended
[2025-11-23 08:21:41] 2025-11-23 13:21:41,363 [wrapper] ==== pilot stdout END ====
[2025-11-23 08:21:41] 2025-11-23 13:21:41,367 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 08:21:41] 2025-11-23 13:21:41,372 [wrapper] pilotpid: 30135
[2025-11-23 08:21:41] 2025-11-23 13:21:41,377 [wrapper] Pilot exit status: 0
[2025-11-23 08:21:41] 2025-11-23 13:21:41,393 [wrapper] pandaids: 6895334148
[2025-11-23 08:21:41] 2025-11-23 13:21:41,435 [wrapper] cleanup supervisor_pilot 10759 30136
[2025-11-23 08:21:41] 2025-11-23 13:21:41,439 [wrapper] Test setup, not cleaning
[2025-11-23 08:21:41] 2025-11-23 13:21:41,444 [wrapper] apfmon messages muted
[2025-11-23 08:21:41] 2025-11-23 13:21:41,448 [wrapper] ==== wrapper stdout END ====
[2025-11-23 08:21:41] 2025-11-23 13:21:41,452 [wrapper] ==== wrapper stderr END ====
[2025-11-23 08:21:41]  *** Error codes and diagnostics ***
[2025-11-23 08:21:41]     "exeErrorCode": 0,
[2025-11-23 08:21:41]     "exeErrorDiag": "",
[2025-11-23 08:21:41]     "pilotErrorCode": 0,
[2025-11-23 08:21:41]     "pilotErrorDiag": "",
[2025-11-23 08:21:41]  *** Listing of results directory ***
[2025-11-23 08:21:41] total 1307904
[2025-11-23 08:21:41] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 21:56 pilot3.tar.gz
[2025-11-23 08:21:41] -rwx------ 1 boincer umatlas     36292 Nov 21 22:02 runpilot2-wrapper.sh
[2025-11-23 08:21:41] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 22:02 queuedata.json
[2025-11-23 08:21:41] -rw-r--r-- 1 boincer umatlas       100 Nov 22 19:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 08:21:41] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 19:53 run_atlas
[2025-11-23 08:21:41] -rw-r--r-- 1 boincer umatlas       105 Nov 22 19:53 job.xml
[2025-11-23 08:21:41] -rw-r--r-- 2 boincer umatlas 409392230 Nov 22 19:53 EVNT.47483658._000228.pool.root.1
[2025-11-23 08:21:41] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 19:53 start_atlas.sh
[2025-11-23 08:21:41] drwxrwx--x 2 boincer umatlas      4096 Nov 22 19:53 shared
[2025-11-23 08:21:41] -rw-r--r-- 2 boincer umatlas    590097 Nov 22 19:53 input.tar.gz
[2025-11-23 08:21:41] -rw-r--r-- 1 boincer umatlas         0 Nov 22 19:53 boinc_lockfile
[2025-11-23 08:21:41] -rw-r--r-- 1 boincer umatlas      2785 Nov 22 19:53 pandaJob.out
[2025-11-23 08:21:41] -rw------- 1 boincer umatlas        57 Nov 22 19:53 setup.sh.local
[2025-11-23 08:21:41] -rw------- 1 boincer umatlas    989784 Nov 22 19:54 agis_schedconf.cvmfs.json
[2025-11-23 08:21:41] drwx------ 5 boincer umatlas      4096 Nov 22 19:54 pilot3
[2025-11-23 08:21:41] -rw-r--r-- 1 boincer umatlas       532 Nov 23 08:09 boinc_task_state.xml
[2025-11-23 08:21:41] -rw-r--r-- 1 boincer umatlas      5910 Nov 23 08:18 init_data.xml
[2025-11-23 08:21:41] -rw------- 1 boincer umatlas 909673030 Nov 23 08:20 HITS.47556137._002248.pool.root.1
[2025-11-23 08:21:41] -rw------- 1 boincer umatlas      1064 Nov 23 08:20 memory_monitor_summary.json
[2025-11-23 08:21:41] -rw------- 1 boincer umatlas        95 Nov 23 08:20 pilot_heartbeat.json
[2025-11-23 08:21:41] -rw------- 1 boincer umatlas   1526164 Nov 23 08:21 agis_ddmendpoints.agis.ALL.json
[2025-11-23 08:21:41] -rw------- 1 boincer umatlas   1982694 Nov 23 08:21 log.47556137._002248.job.log.tgz.1
[2025-11-23 08:21:41] -rw------- 1 boincer umatlas      8661 Nov 23 08:21 heartbeat.json
[2025-11-23 08:21:41] -rw-r--r-- 1 boincer umatlas        29 Nov 23 08:21 wrapper_checkpoint.txt
[2025-11-23 08:21:41] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 08:21 boinc_mmap_file
[2025-11-23 08:21:41] -rw------- 1 boincer umatlas       745 Nov 23 08:21 pilotlog.txt
[2025-11-23 08:21:41] -rw------- 1 boincer umatlas   6171147 Nov 23 08:21 log.47556137._002248.job.log.1
[2025-11-23 08:21:41] -rw------- 1 boincer umatlas       353 Nov 23 08:21 output.list
[2025-11-23 08:21:41] -rw-r--r-- 1 boincer umatlas       620 Nov 23 08:21 runtime_log
[2025-11-23 08:21:41] -rw------- 1 boincer umatlas   8171520 Nov 23 08:21 result.tar.gz
[2025-11-23 08:21:41] -rw-r--r-- 1 boincer umatlas      9338 Nov 23 08:21 runtime_log.err
[2025-11-23 08:21:41] -rw------- 1 boincer umatlas       667 Nov 23 08:21 akEMDmw4sg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOtJKDm2yMQXm.diag
[2025-11-23 08:21:41] -rw-r--r-- 1 boincer umatlas     21245 Nov 23 08:21 stderr.txt
[2025-11-23 08:21:41] HITS file was successfully produced:
[2025-11-23 08:21:41] -rw------- 1 boincer umatlas 909673030 Nov 23 08:20 shared/HITS.pool.root.1
[2025-11-23 08:21:41]  *** Contents of shared directory: ***
[2025-11-23 08:21:41] total 1296736
[2025-11-23 08:21:41] -rw-r--r-- 2 boincer umatlas 409392230 Nov 22 19:53 ATLAS.root_0
[2025-11-23 08:21:41] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 19:53 start_atlas.sh
[2025-11-23 08:21:41] -rw-r--r-- 2 boincer umatlas    590097 Nov 22 19:53 input.tar.gz
[2025-11-23 08:21:41] -rw------- 1 boincer umatlas 909673030 Nov 23 08:20 HITS.pool.root.1
[2025-11-23 08:21:41] -rw------- 1 boincer umatlas   8171520 Nov 23 08:21 result.tar.gz
08:21:43 (26438): run_atlas exited; CPU time 340919.310362
08:21:43 (26438): called boinc_finish(0)

</stderr_txt>
]]>

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