Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:17:20 (1963966): wrapper (7.7.26015): starting
10:17:20 (1963966): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 10:17:20] Arguments: --nthreads 3
[2025-11-25 10:17:20] Threads: 3
[2025-11-25 10:17:20] Checking for CVMFS
[2025-11-25 10:17:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 10:17:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 10:17:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 10:17:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 10:17:20] 2.9.2.0 555417 10277 80236 153277 0 80 27265599 36864001 0 130560 0 3650240 99.926 522325 6260 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 10:17:20] CVMFS is ok
[2025-11-25 10:17:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 10:17:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 10:17:20] Further information can be found at the LHC@home message board.
[2025-11-25 10:17:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 10:17:20] Checking for apptainer binary...
[2025-11-25 10:17:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 10:17:20] Running /usr/bin/apptainer --version
[2025-11-25 10:17:20] apptainer version 1.4.1-1.1
[2025-11-25 10:17:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 10:17:20] atlasA212
[2025-11-25 10:17:20] apptainer works
[2025-11-25 10:17:20] Set ATHENA_PROC_NUMBER=3
[2025-11-25 10:17:20] Set ATHENA_CORE_NUMBER=3
[2025-11-25 10:17:20] Starting ATLAS job with PandaID=6893935598
[2025-11-25 10:17:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 14:15:56]  *** The last 200 lines of the pilot log: ***
[2025-11-25 14:15:56] 2025-11-25 13:15:11,532 | INFO     | job 6893935598 has finished - writing final server update
[2025-11-25 14:15:56] 2025-11-25 13:15:11,532 | INFO     | total number of processed events: 400 (read)
[2025-11-25 14:15:56] 2025-11-25 13:15:11,532 | INFO     | executing command: lscpu
[2025-11-25 14:15:56] 2025-11-25 13:15:11,547 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 14:15:56] 2025-11-25 13:15:12,390 | INFO     | time since job start (14265s) is within the limit (172800.0s)
[2025-11-25 14:15:56] 2025-11-25 13:15:13,365 | INFO     | monitor loop #1085: job 0:6893935598 is in state 'finished'
[2025-11-25 14:15:56] 2025-11-25 13:15:13,365 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 14:15:56] 2025-11-25 13:15:14,396 | INFO     | time since job start (14267s) is within the limit (172800.0s)
[2025-11-25 14:15:56] 2025-11-25 13:15:15,603 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 14:15:56] 2025-11-25 13:15:15,605 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4186.581916666667
[2025-11-25 14:15:56] 2025-11-25 13:15:15,606 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893935598/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 14:15:56] 2025-11-25 13:15:15,606 | INFO     | extracted standard info from prmon json
[2025-11-25 14:15:56] 2025-11-25 13:15:15,606 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 14:15:56] 2025-11-25 13:15:15,606 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 14:15:56] 2025-11-25 13:15:15,606 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 14:15:56] 2025-11-25 13:15:15,607 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 14:15:56] 2025-11-25 13:15:15,608 | INFO     | fitting pss+swap vs Time
[2025-11-25 14:15:56] 2025-11-25 13:15:15,609 | INFO     | sum of square deviations: 3972995422.5
[2025-11-25 14:15:56] 2025-11-25 13:15:15,609 | INFO     | sum of deviations: -68848576803.5
[2025-11-25 14:15:56] 2025-11-25 13:15:15,609 | INFO     | mean x: 1764069374.5
[2025-11-25 14:15:56] 2025-11-25 13:15:15,609 | INFO     | mean y: 2430699.5427350425
[2025-11-25 14:15:56] 2025-11-25 13:15:15,609 | INFO     | intersect: 30572228270.701515
[2025-11-25 14:15:56] 2025-11-25 13:15:15,609 | INFO     | chi2: 1.9798735921863602
[2025-11-25 14:15:56] 2025-11-25 13:15:15,610 | INFO     | sum of square deviations: 3723716330.0
[2025-11-25 14:15:56] 2025-11-25 13:15:15,610 | INFO     | sum of deviations: -66663462466.99999
[2025-11-25 14:15:56] 2025-11-25 13:15:15,610 | INFO     | mean x: 1764069222.0
[2025-11-25 14:15:56] 2025-11-25 13:15:15,610 | INFO     | mean y: 2432036.03930131
[2025-11-25 14:15:56] 2025-11-25 13:15:15,610 | INFO     | intersect: 31583506411.268864
[2025-11-25 14:15:56] 2025-11-25 13:15:15,610 | INFO     | chi2: 1.9730230496488552
[2025-11-25 14:15:56] 2025-11-25 13:15:15,610 | INFO     | current chi2=1.9730230496488552 (change=0.34600908687003296 %)
[2025-11-25 14:15:56] 2025-11-25 13:15:15,611 | INFO     | right removable region: 228
[2025-11-25 14:15:56] 2025-11-25 13:15:15,611 | INFO     | sum of square deviations: 3723716330.0
[2025-11-25 14:15:56] 2025-11-25 13:15:15,611 | INFO     | sum of deviations: -100850496447.00002
[2025-11-25 14:15:56] 2025-11-25 13:15:15,611 | INFO     | mean x: 1764069527.0
[2025-11-25 14:15:56] 2025-11-25 13:15:15,611 | INFO     | mean y: 2450044.2052401747
[2025-11-25 14:15:56] 2025-11-25 13:15:15,611 | INFO     | intersect: 47779260036.86504
[2025-11-25 14:15:56] 2025-11-25 13:15:15,612 | INFO     | chi2: 0.45930766693559605
[2025-11-25 14:15:56] 2025-11-25 13:15:15,612 | INFO     | current chi2=0.45930766693559605 (change=76.80116201618782 %)
[2025-11-25 14:15:56] 2025-11-25 13:15:15,612 | INFO     | sum of square deviations: 3485088600.0
[2025-11-25 14:15:56] 2025-11-25 13:15:15,612 | INFO     | sum of deviations: -91971551990.5
[2025-11-25 14:15:56] 2025-11-25 13:15:15,612 | INFO     | mean x: 1764069679.5
[2025-11-25 14:15:56] 2025-11-25 13:15:15,612 | INFO     | mean y: 2444360.84375
[2025-11-25 14:15:56] 2025-11-25 13:15:15,612 | INFO     | intersect: 46556275515.37994
[2025-11-25 14:15:56] 2025-11-25 13:15:15,612 | INFO     | chi2: 0.45439150623610125
[2025-11-25 14:15:56] 2025-11-25 13:15:15,612 | INFO     | current chi2=0.45439150623610125 (change=1.0703415277812334 %)
[2025-11-25 14:15:56] 2025-11-25 13:15:15,612 | INFO     | left removable region: 20
[2025-11-25 14:15:56] 2025-11-25 13:15:15,613 | INFO     | sum of square deviations: 2790348132.0
[2025-11-25 14:15:56] 2025-11-25 13:15:15,613 | INFO     | sum of deviations: -68784145461.99998
[2025-11-25 14:15:56] 2025-11-25 13:15:15,613 | INFO     | mean x: 1764069801.5
[2025-11-25 14:15:56] 2025-11-25 13:15:15,613 | INFO     | mean y: 2431861.903846154
[2025-11-25 14:15:56] 2025-11-25 13:15:15,613 | INFO     | intersect: 43488057343.52653
[2025-11-25 14:15:56] 2025-11-25 13:15:15,613 | INFO     | chi2: 0.41507267900693473
[2025-11-25 14:15:56] 2025-11-25 13:15:15,613 | INFO     | current memory leak: -24.65 B/s (using 208 data points, chi2=0.42)
[2025-11-25 14:15:56] 2025-11-25 13:15:15,613 | INFO     | could have reported an average CPU frequency of 4312 MHz (11 samples)
[2025-11-25 14:15:56] 2025-11-25 13:15:15,614 | INFO     | ..............................
[2025-11-25 14:15:56] 2025-11-25 13:15:15,614 | INFO     | . Timing measurements:
[2025-11-25 14:15:56] 2025-11-25 13:15:15,614 | INFO     | . get job = 0 s
[2025-11-25 14:15:56] 2025-11-25 13:15:15,614 | INFO     | . initial setup = 1 s
[2025-11-25 14:15:56] 2025-11-25 13:15:15,614 | INFO     | . payload setup = 3 s
[2025-11-25 14:15:56] 2025-11-25 13:15:15,614 | INFO     | . stage-in = 0 s
[2025-11-25 14:15:56] 2025-11-25 13:15:15,614 | INFO     | . payload execution = 14239 s
[2025-11-25 14:15:56] 2025-11-25 13:15:15,614 | INFO     | . stage-out = 0 s
[2025-11-25 14:15:56] 2025-11-25 13:15:15,614 | INFO     | . log creation = 0 s
[2025-11-25 14:15:56] 2025-11-25 13:15:15,614 | INFO     | ..............................
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | 
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | job summary report
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | --------------------------------------------------
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | PanDA job id: 6893935598
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | task id: 47523634
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | errors: (none)
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | pilot state: finished 
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | transexitcode: 0
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | exeerrorcode: 0
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | exeerrordiag: 
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | exitcode: 0
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | exitmsg: OK
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | cpuconsumptiontime: 41744 s
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | nevents: 400
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | neventsw: 0
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | pid: 1974132
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | pgrp: 1974132
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | corecount: 3
[2025-11-25 14:15:56] 2025-11-25 13:15:15,647 | INFO     | event service: False
[2025-11-25 14:15:56] 2025-11-25 13:15:15,648 | INFO     | sizes: {0: 2283746, 1: 2284001, 4: 2284263, 11: 2284291, 14246: 2315283, 14247: 2324470, 14249: 2324470, 14255: 2324664}
[2025-11-25 14:15:56] 2025-11-25 13:15:15,648 | INFO     | --------------------------------------------------
[2025-11-25 14:15:56] 2025-11-25 13:15:15,648 | INFO     | 
[2025-11-25 14:15:56] 2025-11-25 13:15:15,648 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-25 14:15:56] 2025-11-25 13:15:15,662 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,662 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,662 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | job 6893935598 has completed (purged errors)
[2025-11-25 14:15:56] 2025-11-25 13:15:15,663 | INFO     | overall cleanup function is called
[2025-11-25 14:15:56] 2025-11-25 13:15:16,669 | INFO     | --- collectZombieJob: --- 10, [1974132]
[2025-11-25 14:15:56] 2025-11-25 13:15:16,669 | INFO     | zombie collector waiting for pid 1974132
[2025-11-25 14:15:56] 2025-11-25 13:15:16,669 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 14:15:56] 2025-11-25 13:15:16,669 | INFO     | collected zombie processes
[2025-11-25 14:15:56] 2025-11-25 13:15:16,669 | INFO     | will attempt to kill all subprocesses of pid=1974132
[2025-11-25 14:15:56] 2025-11-25 13:15:16,728 | INFO     | process IDs to be killed: [1974132] (in reverse order)
[2025-11-25 14:15:56] 2025-11-25 13:15:16,759 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 14:15:56] 2025-11-25 13:15:16,759 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 14:15:56] 2025-11-25 13:15:16,762 | INFO     | did not find any defunct processes belonging to 1974132
[2025-11-25 14:15:56] 2025-11-25 13:15:16,764 | INFO     | did not find any defunct processes belonging to 1974132
[2025-11-25 14:15:56] 2025-11-25 13:15:16,764 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 14:15:56] 2025-11-25 13:15:16,765 | INFO     | ready for new job
[2025-11-25 14:15:56] 2025-11-25 13:15:16,765 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 14:15:56] 2025-11-25 13:15:16,766 | INFO     | ***************************************
[2025-11-25 14:15:56] 2025-11-25 13:15:16,766 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 14:15:56] 2025-11-25 13:15:16,766 | INFO     | ***************************************
[2025-11-25 14:15:56] 2025-11-25 13:15:16,766 | INFO     | 
[2025-11-25 14:15:56] 2025-11-25 13:15:16,766 | INFO     | architecture information:
[2025-11-25 14:15:56] 2025-11-25 13:15:16,766 | INFO     | executing command: cat /etc/os-release
[2025-11-25 14:15:56] 2025-11-25 13:15:16,778 | INFO     | cat /etc/os-release:
[2025-11-25 14:15:56] NAME="CentOS Linux"
[2025-11-25 14:15:56] VERSION="7 (Core)"
[2025-11-25 14:15:56] ID="centos"
[2025-11-25 14:15:56] ID_LIKE="rhel fedora"
[2025-11-25 14:15:56] VERSION_ID="7"
[2025-11-25 14:15:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 14:15:56] ANSI_COLOR="0;31"
[2025-11-25 14:15:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 14:15:56] HOME_URL="https://www.centos.org/"
[2025-11-25 14:15:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 14:15:56] 
[2025-11-25 14:15:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 14:15:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 14:15:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 14:15:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 14:15:56] 
[2025-11-25 14:15:56] 2025-11-25 13:15:16,778 | INFO     | ***************************************
[2025-11-25 14:15:56] 2025-11-25 13:15:17,280 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 14:15:56] 2025-11-25 13:15:17,292 | INFO     | sufficient remaining disk space (375998382080 B)
[2025-11-25 14:15:56] 2025-11-25 13:15:17,292 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 14:15:56] 2025-11-25 13:15:17,292 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 14:15:56] 2025-11-25 13:15:17,292 | INFO     | update_server=False
[2025-11-25 14:15:56] 2025-11-25 13:15:17,292 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 14:15:56] 2025-11-25 13:15:17,292 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:15:56] 2025-11-25 13:15:17,292 | INFO     | aborting loop
[2025-11-25 14:15:56] 2025-11-25 13:15:17,292 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:15:56] 2025-11-25 13:15:17,292 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 14:15:56] 2025-11-25 13:15:17,462 | INFO     | all job control threads have been joined
[2025-11-25 14:15:56] 2025-11-25 13:15:18,169 | INFO     | all data control threads have been joined
[2025-11-25 14:15:56] 2025-11-25 13:15:18,297 | INFO     | [job] retrieve thread has finished
[2025-11-25 14:15:56] 2025-11-25 13:15:18,297 | INFO     | [job] job monitor thread has finished
[2025-11-25 14:15:56] 2025-11-25 13:15:18,297 | INFO     | [job] queue monitor thread has finished
[2025-11-25 14:15:56] 2025-11-25 13:15:18,467 | INFO     | [job] control thread has finished
[2025-11-25 14:15:56] 2025-11-25 13:15:18,756 | INFO     | all payload control threads have been joined
[2025-11-25 14:15:56] 2025-11-25 13:15:18,849 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 14:15:56] 2025-11-25 13:15:19,174 | INFO     | [data] control thread has finished
[2025-11-25 14:15:56] 2025-11-25 13:15:19,291 | INFO     | [job] validate thread has finished
[2025-11-25 14:15:56] 2025-11-25 13:15:19,297 | INFO     | [data] copytool_out thread has finished
[2025-11-25 14:15:56] 2025-11-25 13:15:19,313 | INFO     | [payload] failed_post thread has finished
[2025-11-25 14:15:56] 2025-11-25 13:15:19,327 | INFO     | [data] copytool_in thread has finished
[2025-11-25 14:15:56] 2025-11-25 13:15:19,361 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 14:15:56] 2025-11-25 13:15:19,431 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 14:15:56] 2025-11-25 13:15:19,761 | INFO     | [payload] control thread has finished
[2025-11-25 14:15:56] 2025-11-25 13:15:19,840 | INFO     | [payload] validate_post thread has finished
[2025-11-25 14:15:56] 2025-11-25 13:15:20,256 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 14:15:56] 2025-11-25 13:15:24,261 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 14:15:56] 2025-11-25 13:15:27,867 | INFO     | job.realtimelogging is not enabled
[2025-11-25 14:15:56] 2025-11-25 13:15:28,872 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 14:15:56] 2025-11-25 13:15:47,528 | INFO     | PID=1967686 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 14:15:56] 2025-11-25 13:15:47,528 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 14:15:56] 2025-11-25 13:15:47,528 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 14:15:56] 2025-11-25 13:15:47,528 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 14:15:56] 2025-11-25 13:15:50,283 | INFO     | [monitor] cgroup control has ended
[2025-11-25 14:15:56] 2025-11-25 13:15:51,056 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140641060828992)>', '<ExcThread(monitor, started 140640415364864)>']
[2025-11-25 14:15:56] 2025-11-25 13:15:51,548 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 14:15:56] 2025-11-25 13:15:51,548 | INFO     | [monitor] control thread has ended
[2025-11-25 14:15:56] 2025-11-25 13:15:56,081 | INFO     | all workflow threads have been joined
[2025-11-25 14:15:56] 2025-11-25 13:15:56,081 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 14:15:56] 2025-11-25 13:15:56,081 | INFO     | traces error code: 0
[2025-11-25 14:15:56] 2025-11-25 13:15:56,081 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 14:15:56] 2025-11-25 13:15:56,142 [wrapper] ==== pilot stdout END ====
[2025-11-25 14:15:56] 2025-11-25 13:15:56,146 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 14:15:56] 2025-11-25 13:15:56,149 [wrapper] pilotpid: 1967686
[2025-11-25 14:15:56] 2025-11-25 13:15:56,152 [wrapper] Pilot exit status: 0
[2025-11-25 14:15:56] 2025-11-25 13:15:56,161 [wrapper] pandaids: 6893935598
[2025-11-25 14:15:56] 2025-11-25 13:15:56,183 [wrapper] cleanup supervisor_pilot 2001508 1967687
[2025-11-25 14:15:56] 2025-11-25 13:15:56,186 [wrapper] Test setup, not cleaning
[2025-11-25 14:15:56] 2025-11-25 13:15:56,189 [wrapper] apfmon messages muted
[2025-11-25 14:15:56] 2025-11-25 13:15:56,192 [wrapper] ==== wrapper stdout END ====
[2025-11-25 14:15:56] 2025-11-25 13:15:56,194 [wrapper] ==== wrapper stderr END ====
[2025-11-25 14:15:56]  *** Error codes and diagnostics ***
[2025-11-25 14:15:56]     "exeErrorCode": 0,
[2025-11-25 14:15:56]     "exeErrorDiag": "",
[2025-11-25 14:15:56]     "pilotErrorCode": 0,
[2025-11-25 14:15:56]     "pilotErrorDiag": "",
[2025-11-25 14:15:56]  *** Listing of results directory ***
[2025-11-25 14:15:56] total 631732
[2025-11-25 14:15:56] -rw-r--r-- 1 boinc boinc    576529 Nov 21 10:27 pilot3.tar.gz
[2025-11-25 14:15:56] -rwx------ 1 boinc boinc     36292 Nov 21 10:32 runpilot2-wrapper.sh
[2025-11-25 14:15:56] -rw-r--r-- 1 boinc boinc      5112 Nov 21 10:32 queuedata.json
[2025-11-25 14:15:56] -rw-r--r-- 1 boinc boinc       100 Nov 25 10:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 14:15:56] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 10:17 run_atlas
[2025-11-25 14:15:56] -rw-r--r-- 1 boinc boinc       105 Nov 25 10:17 job.xml
[2025-11-25 14:15:56] -rw-r--r-- 2 boinc boinc 301644512 Nov 25 10:17 EVNT.47523632._000005.pool.root.1
[2025-11-25 14:15:56] -rw-r--r-- 2 boinc boinc    589951 Nov 25 10:17 input.tar.gz
[2025-11-25 14:15:56] -rw-r--r-- 2 boinc boinc     15847 Nov 25 10:17 start_atlas.sh
[2025-11-25 14:15:56] drwxrwx--x 2 boinc boinc      4096 Nov 25 10:17 shared
[2025-11-25 14:15:56] -rw-r--r-- 1 boinc boinc         0 Nov 25 10:17 boinc_setup_complete
[2025-11-25 14:15:56] -rw-r--r-- 1 boinc boinc      6451 Nov 25 10:17 init_data.xml
[2025-11-25 14:15:56] -rw-r--r-- 1 boinc boinc         0 Nov 25 10:17 boinc_lockfile
[2025-11-25 14:15:56] -rw-r--r-- 1 boinc boinc      2631 Nov 25 10:17 pandaJob.out
[2025-11-25 14:15:56] -rw------- 1 boinc boinc    991894 Nov 25 10:17 agis_schedconf.cvmfs.json
[2025-11-25 14:15:56] drwx------ 5 boinc boinc      4096 Nov 25 10:17 pilot3
[2025-11-25 14:15:56] -rw------- 1 boinc boinc 336554791 Nov 25 14:14 HITS.47523634._000108.pool.root.1
[2025-11-25 14:15:56] -rw-r--r-- 1 boinc boinc       530 Nov 25 14:14 boinc_task_state.xml
[2025-11-25 14:15:56] -rw------- 1 boinc boinc        95 Nov 25 14:14 pilot_heartbeat.json
[2025-11-25 14:15:56] -rw------- 1 boinc boinc      1017 Nov 25 14:15 memory_monitor_summary.json
[2025-11-25 14:15:56] -rw------- 1 boinc boinc   1516240 Nov 25 14:15 agis_ddmendpoints.agis.ALL.json
[2025-11-25 14:15:56] -rw------- 1 boinc boinc    381571 Nov 25 14:15 log.47523634._000108.job.log.tgz.1
[2025-11-25 14:15:56] -rw------- 1 boinc boinc      7753 Nov 25 14:15 heartbeat.json
[2025-11-25 14:15:56] -rw-r--r-- 1 boinc boinc      8192 Nov 25 14:15 boinc_mmap_file
[2025-11-25 14:15:56] -rw-r--r-- 1 boinc boinc        28 Nov 25 14:15 wrapper_checkpoint.txt
[2025-11-25 14:15:56] -rw------- 1 boinc boinc      4824 Nov 25 14:15 pilotlog.txt
[2025-11-25 14:15:56] -rw------- 1 boinc boinc   2008403 Nov 25 14:15 log.47523634._000108.job.log.1
[2025-11-25 14:15:56] -rw------- 1 boinc boinc       357 Nov 25 14:15 output.list
[2025-11-25 14:15:56] -rw-r--r-- 1 boinc boinc       620 Nov 25 14:15 runtime_log
[2025-11-25 14:15:56] -rw------- 1 boinc boinc   2406400 Nov 25 14:15 result.tar.gz
[2025-11-25 14:15:56] -rw------- 1 boinc boinc       667 Nov 25 14:15 xpkLDmDgcg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdFJKDmvrYqUo.diag
[2025-11-25 14:15:56] -rw-r--r-- 1 boinc boinc      8913 Nov 25 14:15 runtime_log.err
[2025-11-25 14:15:56] -rw-r--r-- 1 boinc boinc     21442 Nov 25 14:15 stderr.txt
[2025-11-25 14:15:56] HITS file was successfully produced:
[2025-11-25 14:15:56] -rw------- 1 boinc boinc 336554791 Nov 25 14:14 shared/HITS.pool.root.1
[2025-11-25 14:15:56]  *** Contents of shared directory: ***
[2025-11-25 14:15:56] total 626200
[2025-11-25 14:15:56] -rw-r--r-- 2 boinc boinc 301644512 Nov 25 10:17 ATLAS.root_0
[2025-11-25 14:15:56] -rw-r--r-- 2 boinc boinc    589951 Nov 25 10:17 input.tar.gz
[2025-11-25 14:15:56] -rw-r--r-- 2 boinc boinc     15847 Nov 25 10:17 start_atlas.sh
[2025-11-25 14:15:56] -rw------- 1 boinc boinc 336554791 Nov 25 14:14 HITS.pool.root.1
[2025-11-25 14:15:56] -rw------- 1 boinc boinc   2406400 Nov 25 14:15 result.tar.gz
14:15:57 (1963966): run_atlas exited; CPU time 41799.545818
14:15:57 (1963966): called boinc_finish(0)

</stderr_txt>
]]>

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