Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
06:42:41 (612900): wrapper (7.7.26015): starting
06:42:41 (612900): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 06:42:41] Arguments: --nthreads 4
[2025-11-22 06:42:41] Threads: 4
[2025-11-22 06:42:41] Checking for CVMFS
[2025-11-22 06:42:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 06:42:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 06:42:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 06:42:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 06:42:41] 2.13.2.0 489841 3 49736 153170 0 88 2434244 4096000 4063 130560 0 327613 99.084 236579 1994 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 06:42:41] CVMFS is ok
[2025-11-22 06:42:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 06:42:41] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 06:42:41] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 06:42:41] Further information can be found at the LHC@home message board.
[2025-11-22 06:42:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 06:42:41] Checking for apptainer binary...
[2025-11-22 06:42:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 06:42:41] Running /usr/bin/apptainer --version
[2025-11-22 06:42:41] apptainer version 1.4.3
[2025-11-22 06:42:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 06:42:42] SETI64-Ubuntu
[2025-11-22 06:42:42] apptainer works
[2025-11-22 06:42:42] Set ATHENA_PROC_NUMBER=4
[2025-11-22 06:42:42] Set ATHENA_CORE_NUMBER=4
[2025-11-22 06:42:42] Starting ATLAS job with PandaID=6894270949
[2025-11-22 06:42:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/22 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 14:48:30]  *** The last 200 lines of the pilot log: ***
[2025-11-22 14:48:30] 2025-11-22 19:46:12,083 | INFO     | time since job start (29001s) is within the limit (172800.0s)
[2025-11-22 14:48:30] 2025-11-22 19:46:12,199 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 14:48:30] 2025-11-22 19:46:12,213 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2243.4984140625
[2025-11-22 14:48:30] 2025-11-22 19:46:12,228 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/22/PanDA_Pilot-6894270949/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 14:48:30] 2025-11-22 19:46:12,228 | INFO     | extracted standard info from prmon json
[2025-11-22 14:48:30] 2025-11-22 19:46:12,228 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 14:48:30] 2025-11-22 19:46:12,228 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 14:48:30] 2025-11-22 19:46:12,233 | INFO     | fitting pss+swap vs Time
[2025-11-22 14:48:30] 2025-11-22 19:46:12,233 | INFO     | sum of square deviations: 33232064950.0
[2025-11-22 14:48:30] 2025-11-22 19:46:12,237 | INFO     | sum of deviations: 231494840851.00003
[2025-11-22 14:48:30] 2025-11-22 19:46:12,237 | INFO     | mean x: 1763826250.0
[2025-11-22 14:48:30] 2025-11-22 19:46:12,237 | INFO     | mean y: 2245153.3410526314
[2025-11-22 14:48:30] 2025-11-22 19:46:12,237 | INFO     | intersect: -12284583174.868692
[2025-11-22 14:48:30] 2025-11-22 19:46:12,237 | INFO     | chi2: 2.7141704357338874
[2025-11-22 14:48:30] 2025-11-22 19:46:12,238 | INFO     | sum of square deviations: 32193636177.5
[2025-11-22 14:48:30] 2025-11-22 19:46:12,241 | INFO     | sum of deviations: 281779932851.5
[2025-11-22 14:48:30] 2025-11-22 19:46:12,241 | INFO     | mean x: 1763826097.5
[2025-11-22 14:48:30] 2025-11-22 19:46:12,241 | INFO     | mean y: 2252498.9382978724
[2025-11-22 14:48:30] 2025-11-22 19:46:12,241 | INFO     | intersect: -15435916603.023293
[2025-11-22 14:48:30] 2025-11-22 19:46:12,242 | INFO     | chi2: 1.7141891693471256
[2025-11-22 14:48:30] 2025-11-22 19:46:12,242 | INFO     | current chi2=1.7141891693471256 (change=36.842979837276715 %)
[2025-11-22 14:48:30] 2025-11-22 19:46:12,242 | INFO     | sum of square deviations: 31177068280.0
[2025-11-22 14:48:30] 2025-11-22 19:46:12,245 | INFO     | sum of deviations: 276727256034.0
[2025-11-22 14:48:30] 2025-11-22 19:46:12,245 | INFO     | mean x: 1763825945.0
[2025-11-22 14:48:30] 2025-11-22 19:46:12,245 | INFO     | mean y: 2251740.9569892474
[2025-11-22 14:48:30] 2025-11-22 19:46:12,245 | INFO     | intersect: -15653444602.837496
[2025-11-22 14:48:30] 2025-11-22 19:46:12,246 | INFO     | chi2: 1.7127678608130465
[2025-11-22 14:48:30] 2025-11-22 19:46:12,246 | INFO     | current chi2=1.7127678608130465 (change=0.08291433404753078 %)
[2025-11-22 14:48:30] 2025-11-22 19:46:12,246 | INFO     | right removable region: 464
[2025-11-22 14:48:30] 2025-11-22 19:46:12,246 | INFO     | sum of square deviations: 32193636177.5
[2025-11-22 14:48:30] 2025-11-22 19:46:12,249 | INFO     | sum of deviations: 153840425223.99997
[2025-11-22 14:48:30] 2025-11-22 19:46:12,249 | INFO     | mean x: 1763826402.5
[2025-11-22 14:48:30] 2025-11-22 19:46:12,249 | INFO     | mean y: 2256511.7106382977
[2025-11-22 14:48:30] 2025-11-22 19:46:12,249 | INFO     | intersect: -8426359699.4510565
[2025-11-22 14:48:30] 2025-11-22 19:46:12,250 | INFO     | chi2: 1.0707454266605059
[2025-11-22 14:48:30] 2025-11-22 19:46:12,250 | INFO     | current chi2=1.0707454266605059 (change=60.54980879006643 %)
[2025-11-22 14:48:30] 2025-11-22 19:46:12,250 | INFO     | sum of square deviations: 31177068280.0
[2025-11-22 14:48:30] 2025-11-22 19:46:12,253 | INFO     | sum of deviations: 139580717279.99997
[2025-11-22 14:48:30] 2025-11-22 19:46:12,253 | INFO     | mean x: 1763826555.0
[2025-11-22 14:48:30] 2025-11-22 19:46:12,253 | INFO     | mean y: 2258649.853763441
[2025-11-22 14:48:30] 2025-11-22 19:46:12,253 | INFO     | intersect: -7894448426.428501
[2025-11-22 14:48:30] 2025-11-22 19:46:12,254 | INFO     | chi2: 1.0544678172075315
[2025-11-22 14:48:30] 2025-11-22 19:46:12,254 | INFO     | current chi2=1.0544678172075315 (change=1.5202128393619971 %)
[2025-11-22 14:48:30] 2025-11-22 19:46:12,254 | INFO     | left removable region: 20
[2025-11-22 14:48:30] 2025-11-22 19:46:12,254 | INFO     | sum of square deviations: 27140955395.0
[2025-11-22 14:48:30] 2025-11-22 19:46:12,257 | INFO     | sum of deviations: 162562988677.50003
[2025-11-22 14:48:30] 2025-11-22 19:46:12,257 | INFO     | mean x: 1763826524.5
[2025-11-22 14:48:30] 2025-11-22 19:46:12,257 | INFO     | mean y: 2269208.34009009
[2025-11-22 14:48:30] 2025-11-22 19:46:12,257 | INFO     | intersect: -10562315094.546707
[2025-11-22 14:48:30] 2025-11-22 19:46:12,257 | INFO     | chi2: 0.03408225229280049
[2025-11-22 14:48:30] 2025-11-22 19:46:12,257 | INFO     | current memory leak: 5.99 B/s (using 444 data points, chi2=0.03)
[2025-11-22 14:48:30] 2025-11-22 19:46:12,258 | INFO     | could have reported an average CPU frequency of 2300 MHz (20 samples)
[2025-11-22 14:48:30] 2025-11-22 19:46:12,258 | INFO     | ..............................
[2025-11-22 14:48:30] 2025-11-22 19:46:12,258 | INFO     | . Timing measurements:
[2025-11-22 14:48:30] 2025-11-22 19:46:12,258 | INFO     | . get job = 0 s
[2025-11-22 14:48:30] 2025-11-22 19:46:12,258 | INFO     | . initial setup = 2 s
[2025-11-22 14:48:30] 2025-11-22 19:46:12,258 | INFO     | . payload setup = 4 s
[2025-11-22 14:48:30] 2025-11-22 19:46:12,258 | INFO     | . stage-in = 0 s
[2025-11-22 14:48:30] 2025-11-22 19:46:12,258 | INFO     | . payload execution = 28969 s
[2025-11-22 14:48:30] 2025-11-22 19:46:12,258 | INFO     | . stage-out = 3 s
[2025-11-22 14:48:30] 2025-11-22 19:46:12,258 | INFO     | . log creation = 0 s
[2025-11-22 14:48:30] 2025-11-22 19:46:12,258 | INFO     | ..............................
[2025-11-22 14:48:30] 2025-11-22 19:46:12,302 | INFO     | 
[2025-11-22 14:48:30] 2025-11-22 19:46:12,302 | INFO     | job summary report
[2025-11-22 14:48:30] 2025-11-22 19:46:12,302 | INFO     | --------------------------------------------------
[2025-11-22 14:48:30] 2025-11-22 19:46:12,302 | INFO     | PanDA job id: 6894270949
[2025-11-22 14:48:30] 2025-11-22 19:46:12,302 | INFO     | task id: 47533967
[2025-11-22 14:48:30] 2025-11-22 19:46:12,302 | INFO     | errors: (none)
[2025-11-22 14:48:30] 2025-11-22 19:46:12,302 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 14:48:30] 2025-11-22 19:46:12,302 | INFO     | pilot state: finished 
[2025-11-22 14:48:30] 2025-11-22 19:46:12,302 | INFO     | transexitcode: 0
[2025-11-22 14:48:30] 2025-11-22 19:46:12,302 | INFO     | exeerrorcode: 0
[2025-11-22 14:48:30] 2025-11-22 19:46:12,302 | INFO     | exeerrordiag: 
[2025-11-22 14:48:30] 2025-11-22 19:46:12,302 | INFO     | exitcode: 0
[2025-11-22 14:48:30] 2025-11-22 19:46:12,302 | INFO     | exitmsg: OK
[2025-11-22 14:48:30] 2025-11-22 19:46:12,302 | INFO     | cpuconsumptiontime: 115184 s
[2025-11-22 14:48:30] 2025-11-22 19:46:12,303 | INFO     | nevents: 1000
[2025-11-22 14:48:30] 2025-11-22 19:46:12,303 | INFO     | neventsw: 0
[2025-11-22 14:48:30] 2025-11-22 19:46:12,303 | INFO     | pid: 633088
[2025-11-22 14:48:30] 2025-11-22 19:46:12,303 | INFO     | pgrp: 633088
[2025-11-22 14:48:30] 2025-11-22 19:46:12,303 | INFO     | corecount: 4
[2025-11-22 14:48:30] 2025-11-22 19:46:12,303 | INFO     | event service: False
[2025-11-22 14:48:30] 2025-11-22 19:46:12,303 | INFO     | sizes: {0: 2298600, 1: 2298799, 4: 2299061, 11: 2299089, 28978: 2337682, 28983: 2346706, 28984: 2346890, 28988: 2347136}
[2025-11-22 14:48:30] 2025-11-22 19:46:12,303 | INFO     | --------------------------------------------------
[2025-11-22 14:48:30] 2025-11-22 19:46:12,303 | INFO     | 
[2025-11-22 14:48:30] 2025-11-22 19:46:12,303 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/22
[2025-11-22 14:48:30] 2025-11-22 19:46:12,321 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,322 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 14:48:30] 2025-11-22 19:46:12,323 | INFO     | job 6894270949 has completed (purged errors)
[2025-11-22 14:48:30] 2025-11-22 19:46:12,323 | INFO     | overall cleanup function is called
[2025-11-22 14:48:30] 2025-11-22 19:46:13,331 | INFO     | --- collectZombieJob: --- 10, [633088]
[2025-11-22 14:48:30] 2025-11-22 19:46:13,331 | INFO     | zombie collector waiting for pid 633088
[2025-11-22 14:48:30] 2025-11-22 19:46:13,331 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 14:48:30] 2025-11-22 19:46:13,331 | INFO     | collected zombie processes
[2025-11-22 14:48:30] 2025-11-22 19:46:13,332 | INFO     | will attempt to kill all subprocesses of pid=633088
[2025-11-22 14:48:30] 2025-11-22 19:46:13,627 | INFO     | process IDs to be killed: [633088] (in reverse order)
[2025-11-22 14:48:30] 2025-11-22 19:46:13,720 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 14:48:30] 2025-11-22 19:46:13,720 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 14:48:30] 2025-11-22 19:46:13,730 | INFO     | did not find any defunct processes belonging to 633088
[2025-11-22 14:48:30] 2025-11-22 19:46:13,738 | INFO     | did not find any defunct processes belonging to 633088
[2025-11-22 14:48:30] 2025-11-22 19:46:13,739 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 14:48:30] 2025-11-22 19:46:13,739 | INFO     | ready for new job
[2025-11-22 14:48:30] 2025-11-22 19:46:13,739 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 14:48:30] 2025-11-22 19:46:13,741 | INFO     | ***************************************
[2025-11-22 14:48:30] 2025-11-22 19:46:13,741 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 14:48:30] 2025-11-22 19:46:13,741 | INFO     | ***************************************
[2025-11-22 14:48:30] 2025-11-22 19:46:13,741 | INFO     | 
[2025-11-22 14:48:30] 2025-11-22 19:46:13,746 | INFO     | architecture information:
[2025-11-22 14:48:30] 2025-11-22 19:46:13,747 | INFO     | executing command: cat /etc/os-release
[2025-11-22 14:48:30] 2025-11-22 19:46:13,760 | INFO     | cat /etc/os-release:
[2025-11-22 14:48:30] NAME="CentOS Linux"
[2025-11-22 14:48:30] VERSION="7 (Core)"
[2025-11-22 14:48:30] ID="centos"
[2025-11-22 14:48:30] ID_LIKE="rhel fedora"
[2025-11-22 14:48:30] VERSION_ID="7"
[2025-11-22 14:48:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 14:48:30] ANSI_COLOR="0;31"
[2025-11-22 14:48:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 14:48:30] HOME_URL="https://www.centos.org/"
[2025-11-22 14:48:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 14:48:30] 
[2025-11-22 14:48:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 14:48:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 14:48:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 14:48:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 14:48:30] 
[2025-11-22 14:48:30] 2025-11-22 19:46:13,760 | INFO     | ***************************************
[2025-11-22 14:48:30] 2025-11-22 19:46:14,263 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/22
[2025-11-22 14:48:30] 2025-11-22 19:46:14,277 | INFO     | sufficient remaining disk space (362247356416 B)
[2025-11-22 14:48:30] 2025-11-22 19:46:14,277 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 14:48:30] 2025-11-22 19:46:14,277 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 14:48:30] 2025-11-22 19:46:14,277 | INFO     | update_server=False
[2025-11-22 14:48:30] 2025-11-22 19:46:14,277 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 14:48:30] 2025-11-22 19:46:14,278 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:48:30] 2025-11-22 19:46:14,278 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 14:48:30] 2025-11-22 19:46:14,550 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 14:48:30] 2025-11-22 19:46:14,550 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 14:48:30] 2025-11-22 19:46:14,550 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:48:30] 2025-11-22 19:46:14,550 | INFO     | will abort loop
[2025-11-22 14:48:30] 2025-11-22 19:46:14,664 | INFO     | all job control threads have been joined
[2025-11-22 14:48:30] 2025-11-22 19:46:14,764 | INFO     | all payload control threads have been joined
[2025-11-22 14:48:30] 2025-11-22 19:46:15,267 | INFO     | all data control threads have been joined
[2025-11-22 14:48:30] 2025-11-22 19:46:15,283 | INFO     | [job] retrieve thread has finished
[2025-11-22 14:48:30] 2025-11-22 19:46:15,283 | INFO     | [job] queue monitor thread has finished
[2025-11-22 14:48:30] 2025-11-22 19:46:15,399 | INFO     | [data] copytool_in thread has finished
[2025-11-22 14:48:30] 2025-11-22 19:46:15,553 | INFO     | [job] job monitor thread has finished
[2025-11-22 14:48:30] 2025-11-22 19:46:15,565 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 14:48:30] 2025-11-22 19:46:15,668 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 14:48:30] 2025-11-22 19:46:15,669 | INFO     | [job] control thread has finished
[2025-11-22 14:48:30] 2025-11-22 19:46:15,770 | INFO     | [payload] control thread has finished
[2025-11-22 14:48:30] 2025-11-22 19:46:15,882 | INFO     | [job] validate thread has finished
[2025-11-22 14:48:30] 2025-11-22 19:46:15,906 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 14:48:30] 2025-11-22 19:46:15,954 | INFO     | [payload] failed_post thread has finished
[2025-11-22 14:48:30] 2025-11-22 19:46:16,068 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 14:48:30] 2025-11-22 19:46:16,272 | INFO     | [data] control thread has finished
[2025-11-22 14:48:30] 2025-11-22 19:46:16,616 | INFO     | [payload] validate_post thread has finished
[2025-11-22 14:48:30] 2025-11-22 19:46:16,727 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 14:48:30] 2025-11-22 19:46:17,674 | INFO     | [data] copytool_out thread has finished
[2025-11-22 14:48:30] 2025-11-22 19:46:18,283 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 14:48:30] 2025-11-22 19:46:29,634 | INFO     | [monitor] cgroup control has ended
[2025-11-22 14:48:30] 2025-11-22 19:46:30,158 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139141774698304)>', '<ExcThread(monitor, started 139141295630080)>']
[2025-11-22 14:48:30] 2025-11-22 19:46:35,183 | INFO     | all workflow threads have been joined
[2025-11-22 14:48:30] 2025-11-22 19:46:35,184 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 14:48:30] 2025-11-22 19:46:35,184 | INFO     | traces error code: 0
[2025-11-22 14:48:30] 2025-11-22 19:46:35,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 14:48:30] 2025-11-22 19:46:45,502 | INFO     | PID=625452 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 14:48:30] 2025-11-22 19:46:45,503 | INFO     | .. there are 10 such processes running
[2025-11-22 14:48:30] 2025-11-22 19:46:45,503 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 14:48:30] 2025-11-22 19:46:45,503 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 14:48:30] 2025-11-22 19:46:45,503 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 14:48:30] 2025-11-22 19:46:45,503 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 14:48:30] 2025-11-22 19:46:45,503 | INFO     | [monitor] control thread has ended
[2025-11-22 14:48:30] 2025-11-22 19:46:45,587 [wrapper] ==== pilot stdout END ====
[2025-11-22 14:48:30] 2025-11-22 19:46:45,590 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 14:48:30] 2025-11-22 19:46:45,593 [wrapper] pilotpid: 625452
[2025-11-22 14:48:30] 2025-11-22 19:46:45,596 [wrapper] Pilot exit status: 0
[2025-11-22 14:48:30] 2025-11-22 19:46:45,606 [wrapper] pandaids: 6894270949
[2025-11-22 14:48:30] 2025-11-22 19:46:45,669 [wrapper] cleanup supervisor_pilot 1115419 625453
[2025-11-22 14:48:30] 2025-11-22 19:46:45,671 [wrapper] Test setup, not cleaning
[2025-11-22 14:48:30] 2025-11-22 19:46:45,674 [wrapper] apfmon messages muted
[2025-11-22 14:48:30] 2025-11-22 19:46:45,676 [wrapper] ==== wrapper stdout END ====
[2025-11-22 14:48:30] 2025-11-22 19:46:45,678 [wrapper] ==== wrapper stderr END ====
[2025-11-22 14:48:30]  *** Error codes and diagnostics ***
[2025-11-22 14:48:30]     "exeErrorCode": 0,
[2025-11-22 14:48:30]     "exeErrorDiag": "",
[2025-11-22 14:48:30]     "pilotErrorCode": 0,
[2025-11-22 14:48:30]     "pilotErrorDiag": "",
[2025-11-22 14:48:30]  *** Listing of results directory ***
[2025-11-22 14:48:30] total 1306436
[2025-11-22 14:48:30] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 21 02:07 pilot3.tar.gz
[2025-11-22 14:48:30] -rwx------ 1 whitlerd whitlerd     36292 Nov 21 02:10 runpilot2-wrapper.sh
[2025-11-22 14:48:30] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 21 02:10 queuedata.json
[2025-11-22 14:48:30] -rw-rw-r-- 1 whitlerd whitlerd       100 Nov 22 06:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 14:48:30] -rwxr-xr-x 1 whitlerd whitlerd      7986 Nov 22 06:42 run_atlas
[2025-11-22 14:48:30] -rw-rw-r-- 1 whitlerd whitlerd       105 Nov 22 06:42 job.xml
[2025-11-22 14:48:30] -rw-r--r-- 2 whitlerd whitlerd 410270424 Nov 22 06:42 EVNT.47493127._002292.pool.root.1
[2025-11-22 14:48:30] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 06:42 start_atlas.sh
[2025-11-22 14:48:30] drwxrwx--x 2 whitlerd whitlerd      4096 Nov 22 06:42 shared
[2025-11-22 14:48:30] -rw-r--r-- 2 whitlerd whitlerd    590096 Nov 22 06:42 input.tar.gz
[2025-11-22 14:48:30] -rw-rw-r-- 1 whitlerd whitlerd      9474 Nov 22 06:42 init_data.xml
[2025-11-22 14:48:30] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 06:42 boinc_setup_complete
[2025-11-22 14:48:30] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 06:42 boinc_lockfile
[2025-11-22 14:48:30] -rw-rw-r-- 1 whitlerd whitlerd      2785 Nov 22 06:42 pandaJob.out
[2025-11-22 14:48:30] -rw------- 1 whitlerd whitlerd    989768 Nov 22 06:42 agis_schedconf.cvmfs.json
[2025-11-22 14:48:30] drwx------ 5 whitlerd whitlerd      4096 Nov 22 06:42 pilot3
[2025-11-22 14:48:30] -rw-rw-r-- 1 whitlerd whitlerd       530 Nov 22 14:42 boinc_task_state.xml
[2025-11-22 14:48:30] -rw------- 1 whitlerd whitlerd 912741469 Nov 22 14:45 HITS.47533967._002640.pool.root.1
[2025-11-22 14:48:30] -rw------- 1 whitlerd whitlerd        95 Nov 22 14:45 pilot_heartbeat.json
[2025-11-22 14:48:30] -rw------- 1 whitlerd whitlerd      1042 Nov 22 14:45 memory_monitor_summary.json
[2025-11-22 14:48:30] -rw------- 1 whitlerd whitlerd   1526164 Nov 22 14:46 agis_ddmendpoints.agis.ALL.json
[2025-11-22 14:48:30] -rw------- 1 whitlerd whitlerd   1308646 Nov 22 14:46 log.47533967._002640.job.log.tgz.1
[2025-11-22 14:48:30] -rw------- 1 whitlerd whitlerd      8588 Nov 22 14:46 heartbeat.json
[2025-11-22 14:48:30] -rw------- 1 whitlerd whitlerd       822 Nov 22 14:46 pilotlog.txt
[2025-11-22 14:48:30] -rw------- 1 whitlerd whitlerd   4120024 Nov 22 14:46 log.47533967._002640.job.log.1
[2025-11-22 14:48:30] -rw------- 1 whitlerd whitlerd       353 Nov 22 14:46 output.list
[2025-11-22 14:48:30] -rw-rw-r-- 1 whitlerd whitlerd       620 Nov 22 14:46 runtime_log
[2025-11-22 14:48:30] -rw------- 1 whitlerd whitlerd   5447680 Nov 22 14:46 result.tar.gz
[2025-11-22 14:48:30] -rw-rw-r-- 1 whitlerd whitlerd      9042 Nov 22 14:46 runtime_log.err
[2025-11-22 14:48:30] -rw------- 1 whitlerd whitlerd       661 Nov 22 14:46 8Z6MDmcSag8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpAJKDmxmahkn.diag
[2025-11-22 14:48:30] -rw-rw-r-- 1 whitlerd whitlerd        28 Nov 22 14:48 wrapper_checkpoint.txt
[2025-11-22 14:48:30] -rw-rw-r-- 1 whitlerd whitlerd      8192 Nov 22 14:48 boinc_mmap_file
[2025-11-22 14:48:30] -rw-rw-r-- 1 whitlerd whitlerd     21345 Nov 22 14:48 stderr.txt
[2025-11-22 14:48:30] HITS file was successfully produced:
[2025-11-22 14:48:30] -rw------- 1 whitlerd whitlerd 912741469 Nov 22 14:45 shared/HITS.pool.root.1
[2025-11-22 14:48:30]  *** Contents of shared directory: ***
[2025-11-22 14:48:30] total 1297932
[2025-11-22 14:48:30] -rw-r--r-- 2 whitlerd whitlerd 410270424 Nov 22 06:42 ATLAS.root_0
[2025-11-22 14:48:30] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 06:42 start_atlas.sh
[2025-11-22 14:48:30] -rw-r--r-- 2 whitlerd whitlerd    590096 Nov 22 06:42 input.tar.gz
[2025-11-22 14:48:30] -rw------- 1 whitlerd whitlerd 912741469 Nov 22 14:45 HITS.pool.root.1
[2025-11-22 14:48:30] -rw------- 1 whitlerd whitlerd   5447680 Nov 22 14:46 result.tar.gz
14:48:32 (612900): run_atlas exited; CPU time 115896.099571
14:48:32 (612900): called boinc_finish(0)

</stderr_txt>
]]>

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