Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
17:26:45 (1770530): wrapper (7.7.26015): starting
17:26:45 (1770530): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 17:26:45] Arguments: --nthreads 12
[2025-11-24 17:26:45] Threads: 12
[2025-11-24 17:26:45] Checking for CVMFS
[2025-11-24 17:26:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 17:26:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 17:26:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 17:26:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 17:26:46] 2.13.2.0 296573 3367 48896 153254 0 81 2142381 4096000 3099 130560 0 4214369 99.875 411210 572 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-11-24 17:26:46] CVMFS is ok
[2025-11-24 17:26:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 17:26:46] Checking for apptainer binary...
[2025-11-24 17:26:46] apptainer is not installed, using version from CVMFS
[2025-11-24 17:26:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 17:26:46] dualxeon1
[2025-11-24 17:26:46] apptainer works
[2025-11-24 17:26:46] Set ATHENA_PROC_NUMBER=12
[2025-11-24 17:26:46] Set ATHENA_CORE_NUMBER=12
[2025-11-24 17:26:46] Starting ATLAS job with PandaID=6891570698
[2025-11-24 17:26:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 06:35:29]  *** The last 200 lines of the pilot log: ***
[2025-11-25 06:35:29] 2025-11-25 06:34:36,222 | INFO     | intersect: -8050945640.402494
[2025-11-25 06:35:29] 2025-11-25 06:34:36,223 | INFO     | chi2: 11.02064587755553
[2025-11-25 06:35:29] 2025-11-25 06:34:36,224 | INFO     | sum of square deviations: 141003045142.59317
[2025-11-25 06:35:29] 2025-11-25 06:34:36,239 | INFO     | sum of deviations: 972517444933.387
[2025-11-25 06:35:29] 2025-11-25 06:34:36,239 | INFO     | mean x: 1764028689.8218465
[2025-11-25 06:35:29] 2025-11-25 06:34:36,239 | INFO     | mean y: 3441371.5721716513
[2025-11-25 06:35:29] 2025-11-25 06:34:36,239 | INFO     | intersect: -12163307739.979548
[2025-11-25 06:35:29] 2025-11-25 06:34:36,240 | INFO     | chi2: 7.671255753417894
[2025-11-25 06:35:29] 2025-11-25 06:34:36,240 | INFO     | current chi2=7.671255753417894 (change=30.391958523583 %)
[2025-11-25 06:35:29] 2025-11-25 06:34:36,241 | INFO     | sum of square deviations: 138270985947.51834
[2025-11-25 06:35:29] 2025-11-25 06:34:36,255 | INFO     | sum of deviations: 1268728776753.9885
[2025-11-25 06:35:29] 2025-11-25 06:34:36,255 | INFO     | mean x: 1764028537.3403141
[2025-11-25 06:35:29] 2025-11-25 06:34:36,255 | INFO     | mean y: 3457891.876963351
[2025-11-25 06:35:29] 2025-11-25 06:34:36,255 | INFO     | intersect: -16182683784.934252
[2025-11-25 06:35:29] 2025-11-25 06:34:36,256 | INFO     | chi2: 4.634459374787242
[2025-11-25 06:35:29] 2025-11-25 06:34:36,256 | INFO     | current chi2=4.634459374787242 (change=39.58669188258547 %)
[2025-11-25 06:35:29] 2025-11-25 06:34:36,257 | INFO     | sum of square deviations: 135574462301.91548
[2025-11-25 06:35:29] 2025-11-25 06:34:36,271 | INFO     | sum of deviations: 1451040028634.6086
[2025-11-25 06:35:29] 2025-11-25 06:34:36,271 | INFO     | mean x: 1764028384.859025
[2025-11-25 06:35:29] 2025-11-25 06:34:36,271 | INFO     | mean y: 3468198.8748353096
[2025-11-25 06:35:29] 2025-11-25 06:34:36,271 | INFO     | intersect: -18876752711.593327
[2025-11-25 06:35:29] 2025-11-25 06:34:36,272 | INFO     | chi2: 3.452246795971082
[2025-11-25 06:35:29] 2025-11-25 06:34:36,272 | INFO     | current chi2=3.452246795971082 (change=25.509179889411215 %)
[2025-11-25 06:35:29] 2025-11-25 06:34:36,273 | INFO     | sum of square deviations: 132912686702.15504
[2025-11-25 06:35:29] 2025-11-25 06:34:36,286 | INFO     | sum of deviations: 1493912648436.931
[2025-11-25 06:35:29] 2025-11-25 06:34:36,290 | INFO     | mean x: 1764028232.362069
[2025-11-25 06:35:29] 2025-11-25 06:34:36,290 | INFO     | mean y: 3470647.9416445624
[2025-11-25 06:35:29] 2025-11-25 06:34:36,290 | INFO     | intersect: -19823862271.98501
[2025-11-25 06:35:29] 2025-11-25 06:34:36,291 | INFO     | chi2: 3.2888990110797267
[2025-11-25 06:35:29] 2025-11-25 06:34:36,291 | INFO     | current chi2=3.2888990110797267 (change=4.731636946755636 %)
[2025-11-25 06:35:29] 2025-11-25 06:34:36,291 | INFO     | right removable region: 753
[2025-11-25 06:35:29] 2025-11-25 06:34:36,292 | INFO     | sum of square deviations: 141001721442.59308
[2025-11-25 06:35:29] 2025-11-25 06:34:36,322 | INFO     | sum of deviations: 350500506316.14136
[2025-11-25 06:35:29] 2025-11-25 06:34:36,322 | INFO     | mean x: 1764028994.8218465
[2025-11-25 06:35:29] 2025-11-25 06:34:36,322 | INFO     | mean y: 3440803.3368010405
[2025-11-25 06:35:29] 2025-11-25 06:34:36,322 | INFO     | intersect: -4381562794.602539
[2025-11-25 06:35:29] 2025-11-25 06:34:36,323 | INFO     | chi2: 8.177347229225
[2025-11-25 06:35:29] 2025-11-25 06:34:36,324 | INFO     | current chi2=8.177347229225 (change=25.799746039577837 %)
[2025-11-25 06:35:29] 2025-11-25 06:34:36,325 | INFO     | sum of square deviations: 138268994812.7905
[2025-11-25 06:35:29] 2025-11-25 06:34:36,344 | INFO     | sum of deviations: 256580382534.04205
[2025-11-25 06:35:29] 2025-11-25 06:34:36,344 | INFO     | mean x: 1764029147.3219895
[2025-11-25 06:35:29] 2025-11-25 06:34:36,344 | INFO     | mean y: 3446035.7356020943
[2025-11-25 06:35:29] 2025-11-25 06:34:36,344 | INFO     | intersect: -3269994073.0458
[2025-11-25 06:35:29] 2025-11-25 06:34:36,345 | INFO     | chi2: 7.883612483798448
[2025-11-25 06:35:29] 2025-11-25 06:34:36,345 | INFO     | current chi2=7.883612483798448 (change=3.5920542101572197 %)
[2025-11-25 06:35:29] 2025-11-25 06:34:36,346 | INFO     | left removable region: 20
[2025-11-25 06:35:29] 2025-11-25 06:34:36,347 | INFO     | sum of square deviations: 122112369662.674
[2025-11-25 06:35:29] 2025-11-25 06:34:36,359 | INFO     | sum of deviations: 1015358001547.5325
[2025-11-25 06:35:29] 2025-11-25 06:34:36,359 | INFO     | mean x: 1764028811.8813097
[2025-11-25 06:35:29] 2025-11-25 06:34:36,359 | INFO     | mean y: 3498221.695770805
[2025-11-25 06:35:29] 2025-11-25 06:34:36,359 | INFO     | intersect: -14664309585.587864
[2025-11-25 06:35:29] 2025-11-25 06:34:36,360 | INFO     | chi2: 0.0583210157518775
[2025-11-25 06:35:29] 2025-11-25 06:34:36,360 | INFO     | current memory leak: 8.31 B/s (using 733 data points, chi2=0.06)
[2025-11-25 06:35:29] 2025-11-25 06:34:36,361 | INFO     | could have reported an average CPU frequency of 2594 MHz (30 samples)
[2025-11-25 06:35:29] 2025-11-25 06:34:36,361 | INFO     | ..............................
[2025-11-25 06:35:29] 2025-11-25 06:34:36,362 | INFO     | . Timing measurements:
[2025-11-25 06:35:29] 2025-11-25 06:34:36,362 | INFO     | . get job = 0 s
[2025-11-25 06:35:29] 2025-11-25 06:34:36,362 | INFO     | . initial setup = 2 s
[2025-11-25 06:35:29] 2025-11-25 06:34:36,362 | INFO     | . payload setup = 10 s
[2025-11-25 06:35:29] 2025-11-25 06:34:36,362 | INFO     | . stage-in = 0 s
[2025-11-25 06:35:29] 2025-11-25 06:34:36,362 | INFO     | . payload execution = 47204 s
[2025-11-25 06:35:29] 2025-11-25 06:34:36,362 | INFO     | . stage-out = 4 s
[2025-11-25 06:35:29] 2025-11-25 06:34:36,362 | INFO     | . log creation = 1 s
[2025-11-25 06:35:29] 2025-11-25 06:34:36,362 | INFO     | ..............................
[2025-11-25 06:35:29] 2025-11-25 06:34:36,686 | INFO     | 
[2025-11-25 06:35:29] 2025-11-25 06:34:36,686 | INFO     | job summary report
[2025-11-25 06:35:29] 2025-11-25 06:34:36,686 | INFO     | --------------------------------------------------
[2025-11-25 06:35:29] 2025-11-25 06:34:36,686 | INFO     | PanDA job id: 6891570698
[2025-11-25 06:35:29] 2025-11-25 06:34:36,686 | INFO     | task id: 47493068
[2025-11-25 06:35:29] 2025-11-25 06:34:36,686 | INFO     | errors: (none)
[2025-11-25 06:35:29] 2025-11-25 06:34:36,687 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 06:35:29] 2025-11-25 06:34:36,687 | INFO     | pilot state: finished 
[2025-11-25 06:35:29] 2025-11-25 06:34:36,687 | INFO     | transexitcode: 0
[2025-11-25 06:35:29] 2025-11-25 06:34:36,687 | INFO     | exeerrorcode: 0
[2025-11-25 06:35:29] 2025-11-25 06:34:36,687 | INFO     | exeerrordiag: 
[2025-11-25 06:35:29] 2025-11-25 06:34:36,687 | INFO     | exitcode: 0
[2025-11-25 06:35:29] 2025-11-25 06:34:36,687 | INFO     | exitmsg: OK
[2025-11-25 06:35:29] 2025-11-25 06:34:36,687 | INFO     | cpuconsumptiontime: 332055 s
[2025-11-25 06:35:29] 2025-11-25 06:34:36,687 | INFO     | nevents: 1000
[2025-11-25 06:35:29] 2025-11-25 06:34:36,687 | INFO     | neventsw: 0
[2025-11-25 06:35:29] 2025-11-25 06:34:36,687 | INFO     | pid: 1781033
[2025-11-25 06:35:29] 2025-11-25 06:34:36,688 | INFO     | pgrp: 1781033
[2025-11-25 06:35:29] 2025-11-25 06:34:36,688 | INFO     | corecount: 12
[2025-11-25 06:35:29] 2025-11-25 06:34:36,688 | INFO     | event service: False
[2025-11-25 06:35:29] 2025-11-25 06:34:36,688 | INFO     | sizes: {0: 2283471, 1: 2284350, 9: 2284612, 12: 2284640, 47220: 2330879, 47225: 2340103, 47233: 2340293}
[2025-11-25 06:35:29] 2025-11-25 06:34:36,688 | INFO     | --------------------------------------------------
[2025-11-25 06:35:29] 2025-11-25 06:34:36,688 | INFO     | 
[2025-11-25 06:35:29] 2025-11-25 06:34:36,688 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/4
[2025-11-25 06:35:29] 2025-11-25 06:34:36,729 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,729 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,729 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,729 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,729 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,729 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,729 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,730 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,730 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,730 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,730 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,730 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,730 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,730 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,730 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,730 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,730 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,731 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 06:35:29] 2025-11-25 06:34:36,731 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,731 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 06:35:29] 2025-11-25 06:34:36,731 | INFO     | job 6891570698 has completed (purged errors)
[2025-11-25 06:35:29] 2025-11-25 06:34:36,731 | INFO     | overall cleanup function is called
[2025-11-25 06:35:29] 2025-11-25 06:34:37,764 | INFO     | --- collectZombieJob: --- 10, [1781033]
[2025-11-25 06:35:29] 2025-11-25 06:34:37,764 | INFO     | zombie collector waiting for pid 1781033
[2025-11-25 06:35:29] 2025-11-25 06:34:37,764 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 06:35:29] 2025-11-25 06:34:37,764 | INFO     | collected zombie processes
[2025-11-25 06:35:29] 2025-11-25 06:34:37,764 | INFO     | will attempt to kill all subprocesses of pid=1781033
[2025-11-25 06:35:29] 2025-11-25 06:34:38,133 | INFO     | process IDs to be killed: [1781033] (in reverse order)
[2025-11-25 06:35:29] 2025-11-25 06:34:38,290 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 06:35:29] 2025-11-25 06:34:38,291 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 06:35:29] 2025-11-25 06:34:38,306 | INFO     | did not find any defunct processes belonging to 1781033
[2025-11-25 06:35:29] 2025-11-25 06:34:38,314 | INFO     | did not find any defunct processes belonging to 1781033
[2025-11-25 06:35:29] 2025-11-25 06:34:38,315 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 06:35:29] 2025-11-25 06:34:38,315 | INFO     | ready for new job
[2025-11-25 06:35:29] 2025-11-25 06:34:38,315 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 06:35:29] 2025-11-25 06:34:38,323 | INFO     | ***************************************
[2025-11-25 06:35:29] 2025-11-25 06:34:38,323 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 06:35:29] 2025-11-25 06:34:38,323 | INFO     | ***************************************
[2025-11-25 06:35:29] 2025-11-25 06:34:38,323 | INFO     | 
[2025-11-25 06:35:29] 2025-11-25 06:34:38,329 | INFO     | architecture information:
[2025-11-25 06:35:29] 2025-11-25 06:34:38,329 | INFO     | executing command: cat /etc/os-release
[2025-11-25 06:35:29] 2025-11-25 06:34:38,355 | INFO     | cat /etc/os-release:
[2025-11-25 06:35:29] NAME="CentOS Linux"
[2025-11-25 06:35:29] VERSION="7 (Core)"
[2025-11-25 06:35:29] ID="centos"
[2025-11-25 06:35:29] ID_LIKE="rhel fedora"
[2025-11-25 06:35:29] VERSION_ID="7"
[2025-11-25 06:35:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 06:35:29] ANSI_COLOR="0;31"
[2025-11-25 06:35:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 06:35:29] HOME_URL="https://www.centos.org/"
[2025-11-25 06:35:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 06:35:29] 
[2025-11-25 06:35:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 06:35:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 06:35:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 06:35:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 06:35:29] 
[2025-11-25 06:35:29] 2025-11-25 06:34:38,355 | INFO     | ***************************************
[2025-11-25 06:35:29] 2025-11-25 06:34:38,858 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/4
[2025-11-25 06:35:29] 2025-11-25 06:34:38,888 | INFO     | sufficient remaining disk space (426406576128 B)
[2025-11-25 06:35:29] 2025-11-25 06:34:38,888 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 06:35:29] 2025-11-25 06:34:38,889 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 06:35:29] 2025-11-25 06:34:38,889 | INFO     | update_server=False
[2025-11-25 06:35:29] 2025-11-25 06:34:38,889 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 06:35:29] 2025-11-25 06:34:38,889 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 06:35:29] 2025-11-25 06:34:38,890 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 06:35:29] 2025-11-25 06:34:39,164 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:35:29] 2025-11-25 06:34:39,164 | INFO     | aborting loop
[2025-11-25 06:35:29] 2025-11-25 06:34:39,548 | INFO     | all data control threads have been joined
[2025-11-25 06:35:29] 2025-11-25 06:34:39,894 | INFO     | [job] retrieve thread has finished
[2025-11-25 06:35:29] 2025-11-25 06:34:39,946 | INFO     | [payload] validate_post thread has finished
[2025-11-25 06:35:29] 2025-11-25 06:34:39,978 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 06:35:29] 2025-11-25 06:34:40,015 | INFO     | all payload control threads have been joined
[2025-11-25 06:35:29] 2025-11-25 06:34:40,099 | INFO     | all job control threads have been joined
[2025-11-25 06:35:29] 2025-11-25 06:34:40,173 | INFO     | [job] job monitor thread has finished
[2025-11-25 06:35:29] 2025-11-25 06:34:40,207 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 06:35:29] 2025-11-25 06:34:40,297 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 06:35:29] 2025-11-25 06:34:40,334 | INFO     | [payload] failed_post thread has finished
[2025-11-25 06:35:29] 2025-11-25 06:34:40,553 | INFO     | [data] control thread has finished
[2025-11-25 06:35:29] 2025-11-25 06:34:40,610 | INFO     | [data] copytool_in thread has finished
[2025-11-25 06:35:29] 2025-11-25 06:34:40,897 | INFO     | [data] copytool_out thread has finished
[2025-11-25 06:35:29] 2025-11-25 06:34:41,020 | INFO     | [payload] control thread has finished
[2025-11-25 06:35:29] 2025-11-25 06:34:41,104 | INFO     | [job] control thread has finished
[2025-11-25 06:35:29] 2025-11-25 06:34:41,151 | INFO     | [job] validate thread has finished
[2025-11-25 06:35:29] 2025-11-25 06:34:41,297 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 06:35:29] 2025-11-25 06:34:41,491 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:35:29] 2025-11-25 06:34:42,496 | INFO     | [job] queue monitor thread has finished
[2025-11-25 06:35:29] 2025-11-25 06:34:42,897 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 06:35:29] 2025-11-25 06:35:09,517 | INFO     | PID=1774370 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 06:35:29] 2025-11-25 06:35:09,518 | INFO     | .. there are 4 such processes running
[2025-11-25 06:35:29] 2025-11-25 06:35:09,518 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 06:35:29] 2025-11-25 06:35:09,519 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 06:35:29] 2025-11-25 06:35:09,519 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 06:35:29] 2025-11-25 06:35:22,633 | INFO     | [monitor] cgroup control has ended
[2025-11-25 06:35:29] 2025-11-25 06:35:24,037 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132726015174464)>', '<ExcThread(monitor, started 132725646268160)>']
[2025-11-25 06:35:29] 2025-11-25 06:35:24,597 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 06:35:29] 2025-11-25 06:35:24,597 | INFO     | [monitor] control thread has ended
[2025-11-25 06:35:29] 2025-11-25 06:35:29,062 | INFO     | all workflow threads have been joined
[2025-11-25 06:35:29] 2025-11-25 06:35:29,062 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 06:35:29] 2025-11-25 06:35:29,062 | INFO     | traces error code: 0
[2025-11-25 06:35:29] 2025-11-25 06:35:29,063 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 06:35:29] 2025-11-25 06:35:29,266 [wrapper] ==== pilot stdout END ====
[2025-11-25 06:35:29] 2025-11-25 06:35:29,273 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 06:35:29] 2025-11-25 06:35:29,280 [wrapper] pilotpid: 1774370
[2025-11-25 06:35:29] 2025-11-25 06:35:29,288 [wrapper] Pilot exit status: 0
[2025-11-25 06:35:29] 2025-11-25 06:35:29,307 [wrapper] pandaids: 6891570698
[2025-11-25 06:35:29] 2025-11-25 06:35:29,394 [wrapper] cleanup supervisor_pilot 2103716 1774371
[2025-11-25 06:35:29] 2025-11-25 06:35:29,402 [wrapper] Test setup, not cleaning
[2025-11-25 06:35:29] 2025-11-25 06:35:29,407 [wrapper] apfmon messages muted
[2025-11-25 06:35:29] 2025-11-25 06:35:29,415 [wrapper] ==== wrapper stdout END ====
[2025-11-25 06:35:29] 2025-11-25 06:35:29,422 [wrapper] ==== wrapper stderr END ====
[2025-11-25 06:35:29]  *** Error codes and diagnostics ***
[2025-11-25 06:35:29]     "exeErrorCode": 0,
[2025-11-25 06:35:29]     "exeErrorDiag": "",
[2025-11-25 06:35:29]     "pilotErrorCode": 0,
[2025-11-25 06:35:29]     "pilotErrorDiag": "",
[2025-11-25 06:35:29]  *** Listing of results directory ***
[2025-11-25 06:35:29] total 1313948
[2025-11-25 06:35:29] -rw-r--r-- 1 boinc boinc    576529 Nov 18 15:15 pilot3.tar.gz
[2025-11-25 06:35:29] -rw-r--r-- 1 boinc boinc      5112 Nov 18 15:39 queuedata.json
[2025-11-25 06:35:29] -rwx------ 1 boinc boinc     36292 Nov 18 15:40 runpilot2-wrapper.sh
[2025-11-25 06:35:29] -rw-rw-r-- 1 boinc boinc       100 Nov 24 17:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 06:35:29] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 17:26 run_atlas
[2025-11-25 06:35:29] -rw-rw-r-- 1 boinc boinc       105 Nov 24 17:26 job.xml
[2025-11-25 06:35:29] -rw-rw-r-- 1 boinc boinc      9402 Nov 24 17:26 init_data.xml
[2025-11-25 06:35:29] -rw-r--r-- 2 boinc boinc 409305618 Nov 24 17:26 EVNT.47493065._000249.pool.root.1
[2025-11-25 06:35:29] -rw-r--r-- 2 boinc boinc     15120 Nov 24 17:26 start_atlas.sh
[2025-11-25 06:35:29] drwxrwx--x 2 boinc boinc      4096 Nov 24 17:26 shared
[2025-11-25 06:35:29] -rw-r--r-- 2 boinc boinc    590098 Nov 24 17:26 input.tar.gz
[2025-11-25 06:35:29] -rw-rw-r-- 1 boinc boinc         0 Nov 24 17:26 boinc_lockfile
[2025-11-25 06:35:29] -rw-rw-r-- 1 boinc boinc      2773 Nov 24 17:26 pandaJob.out
[2025-11-25 06:35:29] -rw------- 1 boinc boinc    991801 Nov 24 17:27 agis_schedconf.cvmfs.json
[2025-11-25 06:35:29] drwx------ 5 boinc boinc      4096 Nov 24 17:27 pilot3
[2025-11-25 06:35:29] -rw-rw-r-- 1 boinc boinc       533 Nov 25 06:13 boinc_task_state.xml
[2025-11-25 06:35:29] -rw------- 1 boinc boinc 913834674 Nov 25 06:33 HITS.47493068._002490.pool.root.1
[2025-11-25 06:35:29] -rw------- 1 boinc boinc      1039 Nov 25 06:34 memory_monitor_summary.json
[2025-11-25 06:35:29] -rw------- 1 boinc boinc   1516227 Nov 25 06:34 agis_ddmendpoints.agis.ALL.json
[2025-11-25 06:35:29] -rw------- 1 boinc boinc   2457802 Nov 25 06:34 log.47493068._002490.job.log.tgz.1
[2025-11-25 06:35:29] -rw------- 1 boinc boinc      8599 Nov 25 06:34 heartbeat.json
[2025-11-25 06:35:29] -rw------- 1 boinc boinc        95 Nov 25 06:35 pilot_heartbeat.json
[2025-11-25 06:35:29] -rw-rw-r-- 1 boinc boinc      8192 Nov 25 06:35 boinc_mmap_file
[2025-11-25 06:35:29] -rw-rw-r-- 1 boinc boinc        29 Nov 25 06:35 wrapper_checkpoint.txt
[2025-11-25 06:35:29] -rw------- 1 boinc boinc      4847 Nov 25 06:35 pilotlog.txt
[2025-11-25 06:35:29] -rw------- 1 boinc boinc   6749374 Nov 25 06:35 log.47493068._002490.job.log.1
[2025-11-25 06:35:29] -rw------- 1 boinc boinc       353 Nov 25 06:35 output.list
[2025-11-25 06:35:29] -rw-rw-r-- 1 boinc boinc       620 Nov 25 06:35 runtime_log
[2025-11-25 06:35:29] -rw------- 1 boinc boinc   9226240 Nov 25 06:35 result.tar.gz
[2025-11-25 06:35:29] -rw-rw-r-- 1 boinc boinc      9013 Nov 25 06:35 runtime_log.err
[2025-11-25 06:35:29] -rw------- 1 boinc boinc       660 Nov 25 06:35 kUqKDmkzcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKOFKDmjjN1Co.diag
[2025-11-25 06:35:29] -rw-rw-r-- 1 boinc boinc     20877 Nov 25 06:35 stderr.txt
[2025-11-25 06:35:29] HITS file was successfully produced:
[2025-11-25 06:35:29] -rw------- 1 boinc boinc 913834674 Nov 25 06:33 shared/HITS.pool.root.1
[2025-11-25 06:35:29]  *** Contents of shared directory: ***
[2025-11-25 06:35:29] total 1301752
[2025-11-25 06:35:29] -rw-r--r-- 2 boinc boinc 409305618 Nov 24 17:26 ATLAS.root_0
[2025-11-25 06:35:29] -rw-r--r-- 2 boinc boinc     15120 Nov 24 17:26 start_atlas.sh
[2025-11-25 06:35:29] -rw-r--r-- 2 boinc boinc    590098 Nov 24 17:26 input.tar.gz
[2025-11-25 06:35:29] -rw------- 1 boinc boinc 913834674 Nov 25 06:33 HITS.pool.root.1
[2025-11-25 06:35:29] -rw------- 1 boinc boinc   9226240 Nov 25 06:35 result.tar.gz
06:35:30 (1770530): run_atlas exited; CPU time 332164.896959
06:35:30 (1770530): called boinc_finish(0)

</stderr_txt>
]]>

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