Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:48:42 (23169): wrapper (7.7.26015): starting
22:48:42 (23169): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 22:48:42] Arguments: --nthreads 8
[2025-11-24 22:48:42] Threads: 8
[2025-11-24 22:48:42] Checking for CVMFS
[2025-11-24 22:48:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 22:48:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 22:48:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 22:48:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 22:48:45] 2.11.2.0 9336 80124 88256 153259 3 85 17318498 25165825 4632 130560 12 23901713 99.886 13648619 1674 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 22:48:45] CVMFS is ok
[2025-11-24 22:48:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 22:48:45] Checking for apptainer binary...
[2025-11-24 22:48:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 22:48:45] Running /usr/bin/apptainer --version
[2025-11-24 22:48:45] apptainer version 1.3.2-1.el7
[2025-11-24 22:48:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 22:49:02] cg-vwn413.simple-grid.lan
[2025-11-24 22:49:02] apptainer works
[2025-11-24 22:49:02] Set ATHENA_PROC_NUMBER=8
[2025-11-24 22:49:02] Set ATHENA_CORE_NUMBER=8
[2025-11-24 22:49:02] Starting ATLAS job with PandaID=6894248946
[2025-11-24 22:49:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:35:29]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:35:29] 2025-11-25 22:34:08,017 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:35:29] 2025-11-25 22:34:08,410 | INFO     | time since job start (88884s) is within the limit (172800.0s)
[2025-11-25 23:35:29] 2025-11-25 22:34:10,417 | INFO     | time since job start (88886s) is within the limit (172800.0s)
[2025-11-25 23:35:29] 2025-11-25 22:34:10,522 | INFO     | monitor loop #5969: job 0:6894248946 is in state 'finished'
[2025-11-25 23:35:29] 2025-11-25 22:34:10,523 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:35:29] 2025-11-25 22:34:12,425 | INFO     | time since job start (88888s) is within the limit (172800.0s)
[2025-11-25 23:35:29] 2025-11-25 22:34:13,030 | INFO     | monitor loop #5970: job 0:6894248946 is in state 'finished'
[2025-11-25 23:35:29] 2025-11-25 22:34:13,030 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:35:29] 2025-11-25 22:34:14,436 | INFO     | time since job start (88890s) is within the limit (172800.0s)
[2025-11-25 23:35:29] 2025-11-25 22:34:15,538 | INFO     | monitor loop #5971: job 0:6894248946 is in state 'finished'
[2025-11-25 23:35:29] 2025-11-25 22:34:15,539 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:35:29] 2025-11-25 22:34:16,444 | INFO     | time since job start (88892s) is within the limit (172800.0s)
[2025-11-25 23:35:29] 2025-11-25 22:34:18,043 | INFO     | monitor loop #5972: job 0:6894248946 is in state 'finished'
[2025-11-25 23:35:29] 2025-11-25 22:34:18,044 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:35:29] 2025-11-25 22:34:18,456 | INFO     | time since job start (88894s) is within the limit (172800.0s)
[2025-11-25 23:35:29] 2025-11-25 22:34:19,464 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 23:35:29] 2025-11-25 22:34:19,465 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 23:35:29] 2025-11-25 22:34:19,467 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6894248946/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:35:29] 2025-11-25 22:34:19,468 | INFO     | extracted standard info from prmon json
[2025-11-25 23:35:29] 2025-11-25 22:34:19,468 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:35:29] 2025-11-25 22:34:19,468 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:35:29] 2025-11-25 22:34:19,505 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:35:29] 2025-11-25 22:34:19,508 | INFO     | sum of square deviations: 939476222234.2971
[2025-11-25 23:35:29] 2025-11-25 22:34:19,586 | INFO     | sum of deviations: 3288509451235.3916
[2025-11-25 23:35:29] 2025-11-25 22:34:19,587 | INFO     | mean x: 1764065791.2598479
[2025-11-25 23:35:29] 2025-11-25 22:34:19,587 | INFO     | mean y: 2842770.357982032
[2025-11-25 23:35:29] 2025-11-25 22:34:19,587 | INFO     | intersect: -6172030941.041064
[2025-11-25 23:35:29] 2025-11-25 22:34:19,589 | INFO     | chi2: 23.25836475421694
[2025-11-25 23:35:29] 2025-11-25 22:34:19,592 | INFO     | sum of square deviations: 929771563713.8336
[2025-11-25 23:35:29] 2025-11-25 22:34:19,649 | INFO     | sum of deviations: 3754271755729.538
[2025-11-25 23:35:29] 2025-11-25 22:34:19,649 | INFO     | mean x: 1764065638.7642164
[2025-11-25 23:35:29] 2025-11-25 22:34:19,649 | INFO     | mean y: 2850088.0104022194
[2025-11-25 23:35:29] 2025-11-25 22:34:19,649 | INFO     | intersect: -7120170298.214115
[2025-11-25 23:35:29] 2025-11-25 22:34:19,651 | INFO     | chi2: 20.193521400742185
[2025-11-25 23:35:29] 2025-11-25 22:34:19,651 | INFO     | current chi2=20.193521400742185 (change=13.177381066392787 %)
[2025-11-25 23:35:29] 2025-11-25 22:34:19,651 | INFO     | right removable region: 1441
[2025-11-25 23:35:29] 2025-11-25 22:34:19,653 | INFO     | sum of square deviations: 929770451683.8336
[2025-11-25 23:35:29] 2025-11-25 22:34:19,719 | INFO     | sum of deviations: 2681709191759.748
[2025-11-25 23:35:29] 2025-11-25 22:34:19,719 | INFO     | mean x: 1764065943.7642164
[2025-11-25 23:35:29] 2025-11-25 22:34:19,720 | INFO     | mean y: 2852304.2198335645
[2025-11-25 23:35:29] 2025-11-25 22:34:19,720 | INFO     | intersect: -5085190499.996429
[2025-11-25 23:35:29] 2025-11-25 22:34:19,722 | INFO     | chi2: 18.57566825069999
[2025-11-25 23:35:29] 2025-11-25 22:34:19,722 | INFO     | current chi2=18.57566825069999 (change=20.1333866460579 %)
[2025-11-25 23:35:29] 2025-11-25 22:34:19,722 | INFO     | left removable region: 10
[2025-11-25 23:35:29] 2025-11-25 22:34:19,724 | INFO     | sum of square deviations: 908654853468.6177
[2025-11-25 23:35:29] 2025-11-25 22:34:19,790 | INFO     | sum of deviations: 2730068769162.2637
[2025-11-25 23:35:29] 2025-11-25 22:34:19,791 | INFO     | mean x: 1764065913.2739344
[2025-11-25 23:35:29] 2025-11-25 22:34:19,791 | INFO     | mean y: 2869503.21104123
[2025-11-25 23:35:29] 2025-11-25 22:34:19,791 | INFO     | intersect: -5297296162.760615
[2025-11-25 23:35:29] 2025-11-25 22:34:19,793 | INFO     | chi2: 11.494615196513195
[2025-11-25 23:35:29] 2025-11-25 22:34:19,794 | INFO     | current memory leak: 3.00 B/s (using 1431 data points, chi2=11.49)
[2025-11-25 23:35:29] 2025-11-25 22:34:19,796 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-25 23:35:29] 2025-11-25 22:34:19,796 | INFO     | ..............................
[2025-11-25 23:35:29] 2025-11-25 22:34:19,797 | INFO     | . Timing measurements:
[2025-11-25 23:35:29] 2025-11-25 22:34:19,797 | INFO     | . get job = 0 s
[2025-11-25 23:35:29] 2025-11-25 22:34:19,797 | INFO     | . initial setup = 6 s
[2025-11-25 23:35:29] 2025-11-25 22:34:19,797 | INFO     | . payload setup = 166 s
[2025-11-25 23:35:29] 2025-11-25 22:34:19,797 | INFO     | . stage-in = 0 s
[2025-11-25 23:35:29] 2025-11-25 22:34:19,797 | INFO     | . payload execution = 88424 s
[2025-11-25 23:35:29] 2025-11-25 22:34:19,797 | INFO     | . stage-out = 5 s
[2025-11-25 23:35:29] 2025-11-25 22:34:19,797 | INFO     | . log creation = 2 s
[2025-11-25 23:35:29] 2025-11-25 22:34:19,797 | INFO     | ..............................
[2025-11-25 23:35:29] 2025-11-25 22:34:19,958 | INFO     | 
[2025-11-25 23:35:29] 2025-11-25 22:34:19,959 | INFO     | job summary report
[2025-11-25 23:35:29] 2025-11-25 22:34:19,959 | INFO     | --------------------------------------------------
[2025-11-25 23:35:29] 2025-11-25 22:34:19,959 | INFO     | PanDA job id: 6894248946
[2025-11-25 23:35:29] 2025-11-25 22:34:19,959 | INFO     | task id: 47533967
[2025-11-25 23:35:29] 2025-11-25 22:34:19,959 | INFO     | errors: (none)
[2025-11-25 23:35:29] 2025-11-25 22:34:19,967 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:35:29] 2025-11-25 22:34:19,968 | INFO     | pilot state: finished 
[2025-11-25 23:35:29] 2025-11-25 22:34:19,968 | INFO     | transexitcode: 0
[2025-11-25 23:35:29] 2025-11-25 22:34:19,968 | INFO     | exeerrorcode: 0
[2025-11-25 23:35:29] 2025-11-25 22:34:19,968 | INFO     | exeerrordiag: 
[2025-11-25 23:35:29] 2025-11-25 22:34:19,968 | INFO     | exitcode: 0
[2025-11-25 23:35:29] 2025-11-25 22:34:19,968 | INFO     | exitmsg: OK
[2025-11-25 23:35:29] 2025-11-25 22:34:19,968 | INFO     | cpuconsumptiontime: 333634 s
[2025-11-25 23:35:29] 2025-11-25 22:34:19,968 | INFO     | nevents: 1000
[2025-11-25 23:35:29] 2025-11-25 22:34:19,968 | INFO     | neventsw: 0
[2025-11-25 23:35:29] 2025-11-25 22:34:19,969 | INFO     | pid: 1289
[2025-11-25 23:35:29] 2025-11-25 22:34:19,969 | INFO     | pgrp: 1289
[2025-11-25 23:35:29] 2025-11-25 22:34:19,969 | INFO     | corecount: 8
[2025-11-25 23:35:29] 2025-11-25 22:34:19,969 | INFO     | event service: False
[2025-11-25 23:35:29] 2025-11-25 22:34:19,969 | INFO     | sizes: {0: 2283480, 1: 2284166, 2: 2284365, 13: 2284365, 24: 2284421, 34: 2284449, 45: 2284605, 56: 2284633, 66: 2284661, 77: 2284689, 88: 2284745, 92: 2285315, 98
[2025-11-25 23:35:29] 2025-11-25 22:34:19,969 | INFO     | --------------------------------------------------
[2025-11-25 23:35:29] 2025-11-25 22:34:19,969 | INFO     | 
[2025-11-25 23:35:29] 2025-11-25 22:34:19,969 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-11-25 23:35:29] 2025-11-25 22:34:20,466 | INFO     | time since job start (88896s) is within the limit (172800.0s)
[2025-11-25 23:35:29] 2025-11-25 22:34:20,473 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,473 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,473 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,474 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,474 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,474 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,474 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,474 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,474 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,474 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,474 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,474 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,474 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,475 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,475 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,475 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,475 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,475 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:35:29] 2025-11-25 22:34:20,475 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,475 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:35:29] 2025-11-25 22:34:20,475 | INFO     | job 6894248946 has completed (purged errors)
[2025-11-25 23:35:29] 2025-11-25 22:34:20,476 | INFO     | overall cleanup function is called
[2025-11-25 23:35:29] 2025-11-25 22:34:21,505 | INFO     | --- collectZombieJob: --- 10, [1289]
[2025-11-25 23:35:29] 2025-11-25 22:34:21,506 | INFO     | zombie collector waiting for pid 1289
[2025-11-25 23:35:29] 2025-11-25 22:34:21,506 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:35:29] 2025-11-25 22:34:21,506 | INFO     | collected zombie processes
[2025-11-25 23:35:29] 2025-11-25 22:34:21,506 | INFO     | will attempt to kill all subprocesses of pid=1289
[2025-11-25 23:35:29] 2025-11-25 22:34:21,634 | INFO     | process IDs to be killed: [1289] (in reverse order)
[2025-11-25 23:35:29] 2025-11-25 22:34:22,633 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:35:29] 2025-11-25 22:34:22,634 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:35:29] 2025-11-25 22:34:22,638 | INFO     | did not find any defunct processes belonging to 1289
[2025-11-25 23:35:29] 2025-11-25 22:34:22,641 | INFO     | did not find any defunct processes belonging to 1289
[2025-11-25 23:35:29] 2025-11-25 22:34:22,660 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:35:29] 2025-11-25 22:34:22,660 | INFO     | ready for new job
[2025-11-25 23:35:29] 2025-11-25 22:34:22,660 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:35:29] 2025-11-25 22:34:22,667 | INFO     | ***************************************
[2025-11-25 23:35:29] 2025-11-25 22:34:22,668 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:35:29] 2025-11-25 22:34:22,668 | INFO     | ***************************************
[2025-11-25 23:35:29] 2025-11-25 22:34:22,668 | INFO     | 
[2025-11-25 23:35:29] 2025-11-25 22:34:22,668 | INFO     | pilot is running in a VM
[2025-11-25 23:35:29] 2025-11-25 22:34:22,669 | INFO     | architecture information:
[2025-11-25 23:35:29] 2025-11-25 22:34:22,669 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:35:29] 2025-11-25 22:34:22,773 | INFO     | cat /etc/os-release:
[2025-11-25 23:35:29] NAME="CentOS Linux"
[2025-11-25 23:35:29] VERSION="7 (Core)"
[2025-11-25 23:35:29] ID="centos"
[2025-11-25 23:35:29] ID_LIKE="rhel fedora"
[2025-11-25 23:35:29] VERSION_ID="7"
[2025-11-25 23:35:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:35:29] ANSI_COLOR="0;31"
[2025-11-25 23:35:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:35:29] HOME_URL="https://www.centos.org/"
[2025-11-25 23:35:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:35:29] 
[2025-11-25 23:35:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:35:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:35:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:35:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:35:29] 
[2025-11-25 23:35:29] 2025-11-25 22:34:22,773 | INFO     | ***************************************
[2025-11-25 23:35:29] 2025-11-25 22:34:23,277 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-11-25 23:35:29] 2025-11-25 22:34:23,483 | INFO     | sufficient remaining disk space (494689845248 B)
[2025-11-25 23:35:29] 2025-11-25 22:34:23,484 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:35:29] 2025-11-25 22:34:23,484 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:35:29] 2025-11-25 22:34:23,484 | INFO     | update_server=False
[2025-11-25 23:35:29] 2025-11-25 22:34:23,484 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:35:29] 2025-11-25 22:34:23,498 | INFO     | all payload control threads have been joined
[2025-11-25 23:35:29] 2025-11-25 22:34:24,070 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:35:29] 2025-11-25 22:34:24,071 | INFO     | aborting loop
[2025-11-25 23:35:29] 2025-11-25 22:34:24,196 | INFO     | all data control threads have been joined
[2025-11-25 23:35:29] 2025-11-25 22:34:24,455 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:35:29] 2025-11-25 22:34:24,491 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:35:29] 2025-11-25 22:34:24,505 | INFO     | [payload] control thread has finished
[2025-11-25 23:35:29] 2025-11-25 22:34:24,639 | INFO     | all job control threads have been joined
[2025-11-25 23:35:29] 2025-11-25 22:34:24,715 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:35:29] 2025-11-25 22:34:24,796 | INFO     | [job] validate thread has finished
[2025-11-25 23:35:29] 2025-11-25 22:34:24,908 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:35:29] 2025-11-25 22:34:24,972 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:35:29] 2025-11-25 22:34:25,050 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:35:29] 2025-11-25 22:34:25,077 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:35:29] 2025-11-25 22:34:25,185 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:35:29] 2025-11-25 22:34:25,202 | INFO     | [data] control thread has finished
[2025-11-25 23:35:29] 2025-11-25 22:34:25,276 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:35:29] 2025-11-25 22:34:25,646 | INFO     | [job] control thread has finished
[2025-11-25 23:35:29] 2025-11-25 22:34:25,653 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:35:29] 2025-11-25 22:34:25,763 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:35:29] 2025-11-25 22:34:25,795 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:35:29] 2025-11-25 22:34:25,978 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:35:29] 2025-11-25 22:34:26,463 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:35:29] 2025-11-25 22:34:28,725 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:35:29] 2025-11-25 22:34:53,634 | INFO     | PID=27051 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 23:35:29] 2025-11-25 22:34:53,635 | INFO     | .. there are 9 such processes running
[2025-11-25 23:35:29] 2025-11-25 22:34:53,636 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:35:29] 2025-11-25 22:34:53,636 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:35:29] 2025-11-25 22:34:53,636 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:35:29] 2025-11-25 22:35:18,391 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:35:29] 2025-11-25 22:35:19,651 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140501961389888)>', '<ExcThread(monitor, started 140501508409088)>']
[2025-11-25 23:35:29] 2025-11-25 22:35:19,790 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:35:29] 2025-11-25 22:35:19,791 | INFO     | [monitor] control thread has ended
[2025-11-25 23:35:29] 2025-11-25 22:35:24,676 | INFO     | all workflow threads have been joined
[2025-11-25 23:35:29] 2025-11-25 22:35:24,677 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:35:29] 2025-11-25 22:35:24,677 | INFO     | traces error code: 0
[2025-11-25 23:35:29] 2025-11-25 22:35:24,677 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:35:29] 2025-11-25 22:35:25,175 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:35:29] 2025-11-25 22:35:25,253 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:35:29] 2025-11-25 22:35:25,313 [wrapper] pilotpid: 27051
[2025-11-25 23:35:29] 2025-11-25 22:35:25,373 [wrapper] Pilot exit status: 0
[2025-11-25 23:35:29] 2025-11-25 22:35:25,743 [wrapper] pandaids: 6894248946
[2025-11-25 23:35:29] 2025-11-25 22:35:26,895 [wrapper] cleanup supervisor_pilot 12138 27052
[2025-11-25 23:35:29] 2025-11-25 22:35:26,967 [wrapper] Test setup, not cleaning
[2025-11-25 23:35:29] 2025-11-25 22:35:27,097 [wrapper] apfmon messages muted
[2025-11-25 23:35:29] 2025-11-25 22:35:27,202 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:35:29] 2025-11-25 22:35:27,235 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:35:29]  *** Error codes and diagnostics ***
[2025-11-25 23:35:29]     "exeErrorCode": 0,
[2025-11-25 23:35:29]     "exeErrorDiag": "",
[2025-11-25 23:35:29]     "pilotErrorCode": 0,
[2025-11-25 23:35:29]     "pilotErrorDiag": "",
[2025-11-25 23:35:29]  *** Listing of results directory ***
[2025-11-25 23:35:29] total 1311788
[2025-11-25 23:35:29] -rw-r--r--. 1 boinc boinc    576529 Nov 21 02:08 pilot3.tar.gz
[2025-11-25 23:35:29] -rw-r--r--. 1 boinc boinc      5112 Nov 21 02:47 queuedata.json
[2025-11-25 23:35:29] -rwx------. 1 boinc boinc     36292 Nov 21 02:48 runpilot2-wrapper.sh
[2025-11-25 23:35:29] -rw-r--r--. 1 boinc boinc       100 Nov 24 22:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:35:29] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 22:48 run_atlas
[2025-11-25 23:35:29] -rw-r--r--. 1 boinc boinc       105 Nov 24 22:48 job.xml
[2025-11-25 23:35:29] -rw-r--r--. 1 boinc boinc      6393 Nov 24 22:48 init_data.xml
[2025-11-25 23:35:29] -rw-r--r--. 2 boinc boinc 409328398 Nov 24 22:48 EVNT.47493127._002100.pool.root.1
[2025-11-25 23:35:29] -rw-r--r--. 2 boinc boinc     15847 Nov 24 22:48 start_atlas.sh
[2025-11-25 23:35:29] drwxrwx--x. 2 boinc boinc        68 Nov 24 22:48 shared
[2025-11-25 23:35:29] -rw-r--r--. 2 boinc boinc    590103 Nov 24 22:48 input.tar.gz
[2025-11-25 23:35:29] -rw-r--r--. 1 boinc boinc         0 Nov 24 22:48 boinc_lockfile
[2025-11-25 23:35:29] -rw-r--r--. 1 boinc boinc      2785 Nov 24 22:49 pandaJob.out
[2025-11-25 23:35:29] -rw-------. 1 boinc boinc    991801 Nov 24 22:52 agis_schedconf.cvmfs.json
[2025-11-25 23:35:29] drwx------. 5 boinc boinc      4096 Nov 24 22:52 pilot3
[2025-11-25 23:35:29] -rw-r--r--. 1 boinc boinc       533 Nov 25 23:08 boinc_task_state.xml
[2025-11-25 23:35:29] -rw-------. 1 boinc boinc 901246469 Nov 25 23:30 HITS.47533967._000716.pool.root.1
[2025-11-25 23:35:29] -rw-------. 1 boinc boinc      1031 Nov 25 23:32 memory_monitor_summary.json
[2025-11-25 23:35:29] -rw-------. 1 boinc boinc   1516240 Nov 25 23:32 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:35:29] -rw-------. 1 boinc boinc   2540824 Nov 25 23:32 log.47533967._000716.job.log.tgz.1
[2025-11-25 23:35:29] -rw-------. 1 boinc boinc      7946 Nov 25 23:34 heartbeat.json
[2025-11-25 23:35:29] -rw-------. 1 boinc boinc        95 Nov 25 23:34 pilot_heartbeat.json
[2025-11-25 23:35:29] -rw-r--r--. 1 boinc boinc      8192 Nov 25 23:35 boinc_mmap_file
[2025-11-25 23:35:29] -rw-r--r--. 1 boinc boinc        29 Nov 25 23:35 wrapper_checkpoint.txt
[2025-11-25 23:35:29] -rw-------. 1 boinc boinc      4885 Nov 25 23:35 pilotlog.txt
[2025-11-25 23:35:29] -rw-------. 1 boinc boinc  11856783 Nov 25 23:35 log.47533967._000716.job.log.1
[2025-11-25 23:35:29] -rw-------. 1 boinc boinc       353 Nov 25 23:35 output.list
[2025-11-25 23:35:29] -rw-r--r--. 1 boinc boinc       620 Nov 25 23:35 runtime_log
[2025-11-25 23:35:29] -rw-------. 1 boinc boinc  14417920 Nov 25 23:35 result.tar.gz
[2025-11-25 23:35:29] -rw-------. 1 boinc boinc       662 Nov 25 23:35 vVHNDm9QVg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4pIKDmWCoOjm.diag
[2025-11-25 23:35:29] -rw-r--r--. 1 boinc boinc      8833 Nov 25 23:35 runtime_log.err
[2025-11-25 23:35:29] -rw-r--r--. 1 boinc boinc     21434 Nov 25 23:35 stderr.txt
[2025-11-25 23:35:29] HITS file was successfully produced:
[2025-11-25 23:35:29] -rw-------. 1 boinc boinc 901246469 Nov 25 23:30 shared/HITS.pool.root.1
[2025-11-25 23:35:29]  *** Contents of shared directory: ***
[2025-11-25 23:35:29] total 1294536
[2025-11-25 23:35:29] -rw-r--r--. 2 boinc boinc 409328398 Nov 24 22:48 ATLAS.root_0
[2025-11-25 23:35:29] -rw-r--r--. 2 boinc boinc     15847 Nov 24 22:48 start_atlas.sh
[2025-11-25 23:35:29] -rw-r--r--. 2 boinc boinc    590103 Nov 24 22:48 input.tar.gz
[2025-11-25 23:35:29] -rw-------. 1 boinc boinc 901246469 Nov 25 23:30 HITS.pool.root.1
[2025-11-25 23:35:29] -rw-------. 1 boinc boinc  14417920 Nov 25 23:35 result.tar.gz
23:35:30 (23169): run_atlas exited; CPU time 334179.169760
23:35:30 (23169): called boinc_finish(0)

</stderr_txt>
]]>

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