Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:16:24 (24940): wrapper (7.7.26015): starting
19:16:24 (24940): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 19:16:24] Arguments: --nthreads 8
[2025-11-21 19:16:24] Threads: 8
[2025-11-21 19:16:24] Checking for CVMFS
[2025-11-21 19:16:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 19:16:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 19:16:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 19:16:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 19:16:25] 2.11.2.0 2783 75478 80288 153153 4 1 20021556 20275201 1 130560 0 24653196 99.891 4214102 29769 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 19:16:25] CVMFS is ok
[2025-11-21 19:16:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 19:16:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 19:16:25] Further information can be found at the LHC@home message board.
[2025-11-21 19:16:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 19:16:25] Checking for apptainer binary...
[2025-11-21 19:16:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 19:16:25] Running /usr/bin/apptainer --version
[2025-11-21 19:16:25] apptainer version 1.3.2-1.el7
[2025-11-21 19:16:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 19:16:27] c-204-38.aglt2.org
[2025-11-21 19:16:27] apptainer works
[2025-11-21 19:16:27] Set ATHENA_PROC_NUMBER=8
[2025-11-21 19:16:27] Set ATHENA_CORE_NUMBER=8
[2025-11-21 19:16:27] Starting ATLAS job with PandaID=6894274100
[2025-11-21 19:16:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:09:48 (26191): wrapper (7.7.26015): starting
07:09:48 (26191): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 07:09:48] Arguments: --nthreads 8
[2025-11-22 07:09:48] Threads: 8
[2025-11-22 07:09:48] This job has been restarted, cleaning up previous attempt
[2025-11-22 07:09:49] Checking for CVMFS
[2025-11-22 07:09:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 07:09:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 07:09:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 07:09:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 07:09:49] 2.11.2.0 2783 76191 79728 153171 0 1 10760170 20275201 1 130560 0 24880969 99.891 4241663 29795 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 07:09:49] CVMFS is ok
[2025-11-22 07:09:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 07:09:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 07:09:49] Further information can be found at the LHC@home message board.
[2025-11-22 07:09:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 07:09:49] Checking for apptainer binary...
[2025-11-22 07:09:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 07:09:49] Running /usr/bin/apptainer --version
[2025-11-22 07:09:49] apptainer version 1.3.2-1.el7
[2025-11-22 07:09:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 07:09:51] c-204-38.aglt2.org
[2025-11-22 07:09:51] apptainer works
[2025-11-22 07:09:51] Set ATHENA_PROC_NUMBER=8
[2025-11-22 07:09:51] Set ATHENA_CORE_NUMBER=8
[2025-11-22 07:09:51] Starting ATLAS job with PandaID=6894274100
[2025-11-22 07:09:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 19:42:29]  *** The last 200 lines of the pilot log: ***
[2025-11-22 19:42:29] 2025-11-23 00:41:52,878 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 19:42:29] 2025-11-23 00:41:52,883 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-22 19:42:29] 2025-11-23 00:41:52,885 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894274100/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 19:42:29] 2025-11-23 00:41:52,887 | INFO     | extracted standard info from prmon json
[2025-11-22 19:42:29] 2025-11-23 00:41:52,887 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 19:42:29] 2025-11-23 00:41:52,887 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 19:42:29] 2025-11-23 00:41:52,900 | INFO     | fitting pss+swap vs Time
[2025-11-22 19:42:29] 2025-11-23 00:41:52,901 | INFO     | sum of square deviations: 125144415254.18135
[2025-11-22 19:42:29] 2025-11-23 00:41:52,912 | INFO     | sum of deviations: 903574555495.7979
[2025-11-22 19:42:29] 2025-11-23 00:41:52,912 | INFO     | mean x: 1763835950.5277402
[2025-11-22 19:42:29] 2025-11-23 00:41:52,912 | INFO     | mean y: 2870686.6928281463
[2025-11-22 19:42:29] 2025-11-23 00:41:52,912 | INFO     | intersect: -12732474168.517242
[2025-11-22 19:42:29] 2025-11-23 00:41:52,913 | INFO     | chi2: 5.118504848737326
[2025-11-22 19:42:29] 2025-11-23 00:41:52,914 | INFO     | sum of square deviations: 122621538060.27942
[2025-11-22 19:42:29] 2025-11-23 00:41:52,925 | INFO     | sum of deviations: 1120022762296.5598
[2025-11-22 19:42:29] 2025-11-23 00:41:52,925 | INFO     | mean x: 1763835798.031335
[2025-11-22 19:42:29] 2025-11-23 00:41:52,925 | INFO     | mean y: 2883764.5408719345
[2025-11-22 19:42:29] 2025-11-23 00:41:52,925 | INFO     | intersect: -16107958376.237535
[2025-11-22 19:42:29] 2025-11-23 00:41:52,926 | INFO     | chi2: 2.609056651955881
[2025-11-22 19:42:29] 2025-11-23 00:41:52,926 | INFO     | current chi2=2.609056651955881 (change=49.02697703608693 %)
[2025-11-22 19:42:29] 2025-11-23 00:41:52,927 | INFO     | sum of square deviations: 120132756511.42673
[2025-11-22 19:42:29] 2025-11-23 00:41:52,938 | INFO     | sum of deviations: 1181522280478.729
[2025-11-22 19:42:29] 2025-11-23 00:41:52,938 | INFO     | mean x: 1763835645.5336077
[2025-11-22 19:42:29] 2025-11-23 00:41:52,938 | INFO     | mean y: 2887521.358024691
[2025-11-22 19:42:29] 2025-11-23 00:41:52,938 | INFO     | time since job start (45103s) is within the limit (172800.0s)
[2025-11-22 19:42:29] 2025-11-23 00:41:52,938 | INFO     | intersect: -17344680076.512863
[2025-11-22 19:42:29] 2025-11-23 00:41:52,940 | INFO     | chi2: 2.204382541194141
[2025-11-22 19:42:29] 2025-11-23 00:41:52,940 | INFO     | current chi2=2.204382541194141 (change=15.510361205011627 %)
[2025-11-22 19:42:29] 2025-11-23 00:41:52,940 | INFO     | right removable region: 728
[2025-11-22 19:42:29] 2025-11-23 00:41:52,941 | INFO     | sum of square deviations: 122621300160.27936
[2025-11-22 19:42:29] 2025-11-23 00:41:52,952 | INFO     | sum of deviations: 711778764505.6946
[2025-11-22 19:42:29] 2025-11-23 00:41:52,952 | INFO     | mean x: 1763836103.031335
[2025-11-22 19:42:29] 2025-11-23 00:41:52,953 | INFO     | mean y: 2882260.8828337872
[2025-11-22 19:42:29] 2025-11-23 00:41:52,953 | INFO     | intersect: -10235641393.369394
[2025-11-22 19:42:29] 2025-11-23 00:41:52,954 | INFO     | chi2: 3.1450038022008076
[2025-11-22 19:42:29] 2025-11-23 00:41:52,954 | INFO     | current chi2=3.1450038022008076 (change=38.556201563887505 %)
[2025-11-22 19:42:29] 2025-11-23 00:41:52,955 | INFO     | sum of square deviations: 120132369771.42673
[2025-11-22 19:42:29] 2025-11-23 00:41:52,965 | INFO     | sum of deviations: 655030754334.999
[2025-11-22 19:42:29] 2025-11-23 00:41:52,966 | INFO     | mean x: 1763836255.5336077
[2025-11-22 19:42:29] 2025-11-23 00:41:52,966 | INFO     | mean y: 2885736.673525377
[2025-11-22 19:42:29] 2025-11-23 00:41:52,966 | INFO     | intersect: -9614563708.333605
[2025-11-22 19:42:29] 2025-11-23 00:41:52,967 | INFO     | chi2: 3.0579896929692265
[2025-11-22 19:42:29] 2025-11-23 00:41:52,967 | INFO     | current chi2=3.0579896929692265 (change=2.7667409867895993 %)
[2025-11-22 19:42:29] 2025-11-23 00:41:52,967 | INFO     | left removable region: 20
[2025-11-22 19:42:29] 2025-11-23 00:41:52,968 | INFO     | sum of square deviations: 110047068051.04567
[2025-11-22 19:42:29] 2025-11-23 00:41:52,978 | INFO     | sum of deviations: 853669161586.1947
[2025-11-22 19:42:29] 2025-11-23 00:41:52,978 | INFO     | mean x: 1763836225.0367231
[2025-11-22 19:42:29] 2025-11-23 00:41:52,978 | INFO     | mean y: 2907751.877118644
[2025-11-22 19:42:29] 2025-11-23 00:41:52,978 | INFO     | intersect: -13679715675.255163
[2025-11-22 19:42:29] 2025-11-23 00:41:52,979 | INFO     | chi2: 0.09068829207334902
[2025-11-22 19:42:29] 2025-11-23 00:41:52,979 | INFO     | current memory leak: 7.76 B/s (using 708 data points, chi2=0.09)
[2025-11-22 19:42:29] 2025-11-23 00:41:52,980 | INFO     | could have reported an average CPU frequency of 2162 MHz (28 samples)
[2025-11-22 19:42:29] 2025-11-23 00:41:52,980 | INFO     | ..............................
[2025-11-22 19:42:29] 2025-11-23 00:41:52,980 | INFO     | . Timing measurements:
[2025-11-22 19:42:29] 2025-11-23 00:41:52,980 | INFO     | . get job = 0 s
[2025-11-22 19:42:29] 2025-11-23 00:41:52,980 | INFO     | . initial setup = 2 s
[2025-11-22 19:42:29] 2025-11-23 00:41:52,980 | INFO     | . payload setup = 8 s
[2025-11-22 19:42:29] 2025-11-23 00:41:52,980 | INFO     | . stage-in = 0 s
[2025-11-22 19:42:29] 2025-11-23 00:41:52,981 | INFO     | . payload execution = 45061 s
[2025-11-22 19:42:29] 2025-11-23 00:41:52,981 | INFO     | . stage-out = 4 s
[2025-11-22 19:42:29] 2025-11-23 00:41:52,981 | INFO     | . log creation = 0 s
[2025-11-22 19:42:29] 2025-11-23 00:41:52,981 | INFO     | ..............................
[2025-11-22 19:42:29] 2025-11-23 00:41:53,072 | INFO     | 
[2025-11-22 19:42:29] 2025-11-23 00:41:53,073 | INFO     | job summary report
[2025-11-22 19:42:29] 2025-11-23 00:41:53,073 | INFO     | --------------------------------------------------
[2025-11-22 19:42:29] 2025-11-23 00:41:53,073 | INFO     | PanDA job id: 6894274100
[2025-11-22 19:42:29] 2025-11-23 00:41:53,073 | INFO     | task id: 47533967
[2025-11-22 19:42:29] 2025-11-23 00:41:53,073 | INFO     | errors: (none)
[2025-11-22 19:42:29] 2025-11-23 00:41:53,074 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 19:42:29] 2025-11-23 00:41:53,074 | INFO     | pilot state: finished 
[2025-11-22 19:42:29] 2025-11-23 00:41:53,074 | INFO     | transexitcode: 0
[2025-11-22 19:42:29] 2025-11-23 00:41:53,074 | INFO     | exeerrorcode: 0
[2025-11-22 19:42:29] 2025-11-23 00:41:53,074 | INFO     | exeerrordiag: 
[2025-11-22 19:42:29] 2025-11-23 00:41:53,075 | INFO     | exitcode: 0
[2025-11-22 19:42:29] 2025-11-23 00:41:53,075 | INFO     | exitmsg: OK
[2025-11-22 19:42:29] 2025-11-23 00:41:53,075 | INFO     | cpuconsumptiontime: 349059 s
[2025-11-22 19:42:29] 2025-11-23 00:41:53,075 | INFO     | nevents: 1000
[2025-11-22 19:42:29] 2025-11-23 00:41:53,075 | INFO     | neventsw: 0
[2025-11-22 19:42:29] 2025-11-23 00:41:53,075 | INFO     | pid: 4108
[2025-11-22 19:42:29] 2025-11-23 00:41:53,075 | INFO     | pgrp: 4108
[2025-11-22 19:42:29] 2025-11-23 00:41:53,076 | INFO     | corecount: 8
[2025-11-22 19:42:29] 2025-11-23 00:41:53,076 | INFO     | event service: False
[2025-11-22 19:42:29] 2025-11-23 00:41:53,076 | INFO     | sizes: {0: 2298580, 1: 2298835, 7: 2299097, 12: 2299125, 45074: 2345107, 45075: 2345106, 45080: 2354284, 45081: 2354340, 45087: 2354586}
[2025-11-22 19:42:29] 2025-11-23 00:41:53,076 | INFO     | --------------------------------------------------
[2025-11-22 19:42:29] 2025-11-23 00:41:53,076 | INFO     | 
[2025-11-22 19:42:29] 2025-11-23 00:41:53,077 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 19:42:29] 2025-11-23 00:41:53,105 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,106 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,106 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,106 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,106 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,106 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,107 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,107 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,107 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,107 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,107 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,107 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,108 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,108 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,108 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,108 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,108 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,109 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 19:42:29] 2025-11-23 00:41:53,109 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,109 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 19:42:29] 2025-11-23 00:41:53,109 | INFO     | job 6894274100 has completed (purged errors)
[2025-11-22 19:42:29] 2025-11-23 00:41:53,110 | INFO     | overall cleanup function is called
[2025-11-22 19:42:29] 2025-11-23 00:41:54,054 | INFO     | PID=30026 has CPU usage=14.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 19:42:29] 2025-11-23 00:41:54,125 | INFO     | --- collectZombieJob: --- 10, [4108]
[2025-11-22 19:42:29] 2025-11-23 00:41:54,127 | INFO     | zombie collector waiting for pid 4108
[2025-11-22 19:42:29] 2025-11-23 00:41:54,127 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 19:42:29] 2025-11-23 00:41:54,128 | INFO     | collected zombie processes
[2025-11-22 19:42:29] 2025-11-23 00:41:54,128 | INFO     | will attempt to kill all subprocesses of pid=4108
[2025-11-22 19:42:29] 2025-11-23 00:41:54,220 | INFO     | process IDs to be killed: [4108] (in reverse order)
[2025-11-22 19:42:29] 2025-11-23 00:41:54,281 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 19:42:29] 2025-11-23 00:41:54,281 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 19:42:29] 2025-11-23 00:41:54,286 | INFO     | did not find any defunct processes belonging to 4108
[2025-11-22 19:42:29] 2025-11-23 00:41:54,288 | INFO     | did not find any defunct processes belonging to 4108
[2025-11-22 19:42:29] 2025-11-23 00:41:54,291 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 19:42:29] 2025-11-23 00:41:54,291 | INFO     | ready for new job
[2025-11-22 19:42:29] 2025-11-23 00:41:54,291 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 19:42:29] 2025-11-23 00:41:54,295 | INFO     | ***************************************
[2025-11-22 19:42:29] 2025-11-23 00:41:54,295 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 19:42:29] 2025-11-23 00:41:54,295 | INFO     | ***************************************
[2025-11-22 19:42:29] 2025-11-23 00:41:54,295 | INFO     | 
[2025-11-22 19:42:29] 2025-11-23 00:41:54,296 | INFO     | architecture information:
[2025-11-22 19:42:29] 2025-11-23 00:41:54,297 | INFO     | executing command: cat /etc/os-release
[2025-11-22 19:42:29] 2025-11-23 00:41:54,315 | INFO     | cat /etc/os-release:
[2025-11-22 19:42:29] NAME="CentOS Linux"
[2025-11-22 19:42:29] VERSION="7 (Core)"
[2025-11-22 19:42:29] ID="centos"
[2025-11-22 19:42:29] ID_LIKE="rhel fedora"
[2025-11-22 19:42:29] VERSION_ID="7"
[2025-11-22 19:42:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 19:42:29] ANSI_COLOR="0;31"
[2025-11-22 19:42:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 19:42:29] HOME_URL="https://www.centos.org/"
[2025-11-22 19:42:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 19:42:29] 
[2025-11-22 19:42:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 19:42:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 19:42:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 19:42:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 19:42:29] 
[2025-11-22 19:42:29] 2025-11-23 00:41:54,315 | INFO     | ***************************************
[2025-11-22 19:42:29] 2025-11-23 00:41:54,819 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 19:42:29] 2025-11-23 00:41:54,842 | INFO     | sufficient remaining disk space (17041457152 B)
[2025-11-22 19:42:29] 2025-11-23 00:41:54,842 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 19:42:29] 2025-11-23 00:41:54,842 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 19:42:29] 2025-11-23 00:41:54,843 | INFO     | update_server=False
[2025-11-22 19:42:29] 2025-11-23 00:41:54,843 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 19:42:29] 2025-11-23 00:41:54,843 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:42:29] 2025-11-23 00:41:54,844 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-22 19:42:29] 2025-11-23 00:41:54,844 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 19:42:29] 2025-11-23 00:41:54,845 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 19:42:29] 2025-11-23 00:41:54,845 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 19:42:29] 2025-11-23 00:41:54,845 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 19:42:29] 2025-11-23 00:41:54,868 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 19:42:29] 2025-11-23 00:41:54,868 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 19:42:29] 2025-11-23 00:41:54,874 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:42:29] 2025-11-23 00:41:54,874 | INFO     | will abort loop
[2025-11-22 19:42:29] 2025-11-23 00:41:55,048 | INFO     | all data control threads have been joined
[2025-11-22 19:42:29] 2025-11-23 00:41:55,780 | INFO     | all job control threads have been joined
[2025-11-22 19:42:29] 2025-11-23 00:41:55,849 | INFO     | [job] retrieve thread has finished
[2025-11-22 19:42:29] 2025-11-23 00:41:55,849 | INFO     | [job] queue monitor thread has finished
[2025-11-22 19:42:29] 2025-11-23 00:41:55,871 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 19:42:29] 2025-11-23 00:41:55,882 | INFO     | [job] job monitor thread has finished
[2025-11-22 19:42:29] 2025-11-23 00:41:55,907 | INFO     | [payload] validate_post thread has finished
[2025-11-22 19:42:29] 2025-11-23 00:41:56,054 | INFO     | [data] control thread has finished
[2025-11-22 19:42:29] 2025-11-23 00:41:56,340 | INFO     | all payload control threads have been joined
[2025-11-22 19:42:29] 2025-11-23 00:41:56,521 | INFO     | [payload] failed_post thread has finished
[2025-11-22 19:42:29] 2025-11-23 00:41:56,699 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 19:42:29] 2025-11-23 00:41:56,701 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 19:42:29] 2025-11-23 00:41:56,701 | INFO     | [job] validate thread has finished
[2025-11-22 19:42:29] 2025-11-23 00:41:56,709 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 19:42:29] 2025-11-23 00:41:56,785 | INFO     | [job] control thread has finished
[2025-11-22 19:42:29] 2025-11-23 00:41:56,851 | INFO     | [data] copytool_out thread has finished
[2025-11-22 19:42:29] 2025-11-23 00:41:57,212 | INFO     | [data] copytool_in thread has finished
[2025-11-22 19:42:29] 2025-11-23 00:41:57,346 | INFO     | [payload] control thread has finished
[2025-11-22 19:42:29] 2025-11-23 00:41:57,575 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 19:42:29] 2025-11-23 00:42:01,580 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 19:42:29] 2025-11-23 00:42:23,418 | INFO     | [monitor] cgroup control has ended
[2025-11-22 19:42:29] 2025-11-23 00:42:24,424 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140370635867968)>', '<ExcThread(monitor, started 140369597560576)>']
[2025-11-22 19:42:29] 2025-11-23 00:42:24,981 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 19:42:29] 2025-11-23 00:42:24,982 | INFO     | [monitor] control thread has ended
[2025-11-22 19:42:29] 2025-11-23 00:42:29,427 | INFO     | all workflow threads have been joined
[2025-11-22 19:42:29] 2025-11-23 00:42:29,428 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 19:42:29] 2025-11-23 00:42:29,428 | INFO     | traces error code: 0
[2025-11-22 19:42:29] 2025-11-23 00:42:29,429 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 19:42:29] 2025-11-23 00:42:29,551 [wrapper] ==== pilot stdout END ====
[2025-11-22 19:42:29] 2025-11-23 00:42:29,556 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 19:42:29] 2025-11-23 00:42:29,561 [wrapper] pilotpid: 30026
[2025-11-22 19:42:29] 2025-11-23 00:42:29,566 [wrapper] Pilot exit status: 0
[2025-11-22 19:42:29] 2025-11-23 00:42:29,583 [wrapper] pandaids: 6894274100 6894274100
[2025-11-22 19:42:29] 2025-11-23 00:42:29,630 [wrapper] cleanup supervisor_pilot  5409 30027
[2025-11-22 19:42:29] 2025-11-23 00:42:29,635 [wrapper] Test setup, not cleaning
[2025-11-22 19:42:29] 2025-11-23 00:42:29,640 [wrapper] apfmon messages muted
[2025-11-22 19:42:29] 2025-11-23 00:42:29,644 [wrapper] ==== wrapper stdout END ====
[2025-11-22 19:42:29] 2025-11-23 00:42:29,648 [wrapper] ==== wrapper stderr END ====
[2025-11-22 19:42:29]  *** Error codes and diagnostics ***
[2025-11-22 19:42:29]     "exeErrorCode": 0,
[2025-11-22 19:42:29]     "exeErrorDiag": "",
[2025-11-22 19:42:29]     "pilotErrorCode": 0,
[2025-11-22 19:42:29]     "pilotErrorDiag": "",
[2025-11-22 19:42:29]  *** Listing of results directory ***
[2025-11-22 19:42:29] total 1704768
[2025-11-22 19:42:29] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 19:42:29] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 02:07 pilot3.tar.gz
[2025-11-22 19:42:29] -rwx------ 1 boincer umatlas     36292 Nov 21 02:23 runpilot2-wrapper.sh
[2025-11-22 19:42:29] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 02:23 queuedata.json
[2025-11-22 19:42:29] -rw-r--r-- 1 boincer umatlas       100 Nov 21 19:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 19:42:29] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 19:16 run_atlas
[2025-11-22 19:42:29] -rw-r--r-- 1 boincer umatlas       105 Nov 21 19:16 job.xml
[2025-11-22 19:42:29] -rw-r--r-- 3 boincer umatlas 408831677 Nov 21 19:16 EVNT.47493127._002299.pool.root.1
[2025-11-22 19:42:29] -rw-r--r-- 3 boincer umatlas 408831677 Nov 21 19:16 ATLAS.root_0
[2025-11-22 19:42:29] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 19:16 start_atlas.sh
[2025-11-22 19:42:29] drwxrwx--x 2 boincer umatlas      4096 Nov 21 19:16 shared
[2025-11-22 19:42:29] -rw-r--r-- 2 boincer umatlas    590099 Nov 21 19:16 input.tar.gz
[2025-11-22 19:42:29] -rw-r--r-- 1 boincer umatlas         0 Nov 21 19:16 boinc_lockfile
[2025-11-22 19:42:29] -rw-r--r-- 1 boincer umatlas      2786 Nov 22 07:09 pandaJob.out
[2025-11-22 19:42:29] -rw------- 1 boincer umatlas        57 Nov 22 07:09 setup.sh.local
[2025-11-22 19:42:29] -rw------- 1 boincer umatlas    989768 Nov 22 07:10 agis_schedconf.cvmfs.json
[2025-11-22 19:42:29] -rw-r--r-- 1 boincer umatlas       533 Nov 22 19:32 boinc_task_state.xml
[2025-11-22 19:42:29] -rw-r--r-- 1 boincer umatlas      5912 Nov 22 19:37 init_data.xml
[2025-11-22 19:42:29] -rw------- 1 boincer umatlas 907657352 Nov 22 19:41 HITS.47533967._002703.pool.root.1
[2025-11-22 19:42:29] -rw------- 1 boincer umatlas        96 Nov 22 19:41 pilot_heartbeat.json
[2025-11-22 19:42:29] -rw------- 1 boincer umatlas      1074 Nov 22 19:41 memory_monitor_summary.json
[2025-11-22 19:42:29] -rw------- 1 boincer umatlas   1526164 Nov 22 19:41 agis_ddmendpoints.agis.ALL.json
[2025-11-22 19:42:29] -rw------- 1 boincer umatlas   1990044 Nov 22 19:41 log.47533967._002703.job.log.tgz.1
[2025-11-22 19:42:29] -rw------- 1 boincer umatlas      8662 Nov 22 19:41 heartbeat.json
[2025-11-22 19:42:29] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 19:42 boinc_mmap_file
[2025-11-22 19:42:29] -rw-r--r-- 1 boincer umatlas        29 Nov 22 19:42 wrapper_checkpoint.txt
[2025-11-22 19:42:29] -rw------- 1 boincer umatlas      4738 Nov 22 19:42 pilotlog.txt
[2025-11-22 19:42:29] -rw------- 1 boincer umatlas   6225772 Nov 22 19:42 log.47533967._002703.job.log.1
[2025-11-22 19:42:29] -rw------- 1 boincer umatlas       353 Nov 22 19:42 output.list
[2025-11-22 19:42:29] -rw-r--r-- 1 boincer umatlas       620 Nov 22 19:42 runtime_log
[2025-11-22 19:42:29] -rw------- 1 boincer umatlas   8232960 Nov 22 19:42 result.tar.gz
[2025-11-22 19:42:29] -rw-r--r-- 1 boincer umatlas      9428 Nov 22 19:42 runtime_log.err
[2025-11-22 19:42:29] -rw------- 1 boincer umatlas       793 Nov 22 19:42 HrFNDmEfag8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnBJKDmIl9hfm.diag
[2025-11-22 19:42:29] -rw-r--r-- 1 boincer umatlas     23471 Nov 22 19:42 stderr.txt
[2025-11-22 19:42:29] HITS file was successfully produced:
[2025-11-22 19:42:29] -rw------- 1 boincer umatlas 907657352 Nov 22 19:41 shared/HITS.pool.root.1
[2025-11-22 19:42:29]  *** Contents of shared directory: ***
[2025-11-22 19:42:29] total 1294284
[2025-11-22 19:42:29] -rw-r--r-- 3 boincer umatlas 408831677 Nov 21 19:16 ATLAS.root_0
[2025-11-22 19:42:29] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 19:16 start_atlas.sh
[2025-11-22 19:42:29] -rw-r--r-- 2 boincer umatlas    590099 Nov 21 19:16 input.tar.gz
[2025-11-22 19:42:29] -rw------- 1 boincer umatlas 907657352 Nov 22 19:41 HITS.pool.root.1
[2025-11-22 19:42:29] -rw------- 1 boincer umatlas   8232960 Nov 22 19:42 result.tar.gz
19:42:30 (26191): run_atlas exited; CPU time 345050.712752
19:42:30 (26191): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN