Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-27 01:40:09 (21160): vboxwrapper version 26210
2025-11-27 01:40:09 (21160): BOINC client version: 8.0.2
2025-11-27 01:40:09 (21160): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2025-11-27 01:40:09 (21160): Successfully copied 'init_data.xml' to the shared directory.
2025-11-27 01:40:10 (21160): Create VM. (boinc_f100af19bc42810e, slot#0)
2025-11-27 01:40:10 (21160): Setting Memory Size for VM. (4800MB)
2025-11-27 01:40:10 (21160): Setting CPU Count for VM. (8)
2025-11-27 01:40:11 (21160): Setting Chipset Options for VM.
2025-11-27 01:40:11 (21160): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-27 01:40:11 (21160): Setting Boot Options for VM.
2025-11-27 01:40:12 (21160): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-27 01:40:12 (21160): Enabling VM Network Access.
2025-11-27 01:40:12 (21160): Disabling USB Support for VM.
2025-11-27 01:40:13 (21160): Disabling COM Port Support for VM.
2025-11-27 01:40:13 (21160): Disabling LPT Port Support for VM.
2025-11-27 01:40:13 (21160): Disabling Audio Support for VM.
2025-11-27 01:40:13 (21160): Disabling Clipboard Support for VM.
2025-11-27 01:40:14 (21160): Disabling Drag and Drop Support for VM.
2025-11-27 01:40:14 (21160): Adding storage controller(s) to VM.
2025-11-27 01:40:14 (21160): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-27 01:40:15 (21160): Adding VirtualBox Guest Additions to VM.
2025-11-27 01:40:15 (21160): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-27 01:40:15 (21160): forwarding host port 52274 to guest port 80
2025-11-27 01:40:15 (21160): Enabling remote desktop for VM.
2025-11-27 01:40:16 (21160): Required extension pack not installed, remote desktop not enabled.
2025-11-27 01:40:16 (21160): Enabling shared directory for VM.
2025-11-27 01:40:16 (21160): Starting VM using VBoxManage interface. (boinc_f100af19bc42810e, slot#0)
2025-11-27 01:40:21 (21160): Successfully started VM. (PID = '5544')
2025-11-27 01:40:21 (21160): Reporting VM Process ID to BOINC.
2025-11-27 01:40:21 (21160): Guest Log: BIOS: VirtualBox 6.1.12
2025-11-27 01:40:21 (21160): Guest Log: CPUID EDX: 0x178bfbff
2025-11-27 01:40:21 (21160): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-27 01:40:21 (21160): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-27 01:40:21 (21160): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-27 01:40:21 (21160): Detected: Web Application Enabled (http://localhost:52274)
2025-11-27 01:40:21 (21160): Preference change detected
2025-11-27 01:40:21 (21160): Setting CPU throttle for VM. (100%)
2025-11-27 01:40:22 (21160): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 01:40:23 (21160): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-27 01:40:23 (21160): Guest Log: BIOS: Booting from Hard Disk...
2025-11-27 01:40:26 (21160): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-27 01:40:26 (21160): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-27 01:40:26 (21160): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-27 01:40:32 (21160): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-27 01:40:32 (21160): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-27 01:40:37 (21160): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-27 01:40:37 (21160): Guest Log: 00:00:00.000127 main     Log opened 2025-11-27T01:40:35.550730000Z
2025-11-27 01:40:37 (21160): Guest Log: 00:00:00.000222 main     OS Product: Linux
2025-11-27 01:40:37 (21160): Guest Log: 00:00:00.000281 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-27 01:40:37 (21160): Guest Log: 00:00:00.000308 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-27 01:40:37 (21160): Guest Log: 00:00:00.000333 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-27 01:40:37 (21160): Guest Log: 00:00:00.000334 main     Process ID: 1369
2025-11-27 01:40:37 (21160): Guest Log: 00:00:00.000335 main     Package type: LINUX_64BITS_GENERIC
2025-11-27 01:40:37 (21160): Guest Log: 00:00:00.002036 main     5.2.32 r132073 started. Verbose level = 0
2025-11-27 01:40:37 (21160): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-27 01:40:37 (21160): Guest Log: [INFO] Mounting shared directory
2025-11-27 01:40:37 (21160): Guest Log: [INFO] Checking for init_data.xml
2025-11-27 01:40:42 (21160): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-27 01:40:42 (21160): Guest Log: [INFO] Detected branch: prod
2025-11-27 01:40:42 (21160): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-27 01:40:42 (21160): Guest Log: Copying input files
2025-11-27 01:40:45 (21160): Guest Log: Copied input files into RunAtlas.
2025-11-27 01:40:45 (21160): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-27 01:40:45 (21160): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-27 01:40:45 (21160): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-27 01:40:45 (21160): Guest Log: Further information can be found at the LHC@home message board.
2025-11-27 01:40:47 (21160): Guest Log: 00:00:10.006779 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 611 659 594 000ns (GuestNow=1 764 229 247 213 974 000 ns GuestLast=1 764 207 635 554 380 000 ns fSetTimeLastLoop=true )
2025-11-27 01:40:54 (21160): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-27 01:40:55 (21160): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-27 01:40:55 (21160): Guest Log: 2.6.3.0 1649 0 32176 153353 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-27 01:40:55 (21160): Guest Log: copied the webapp to /var/www
2025-11-27 01:40:55 (21160): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-27 01:40:55 (21160): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-27 01:40:56 (21160): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-27 01:40:56 (21160): Guest Log:  *** Starting ATLAS job. (PandaID=6893887141 taskID=47523449) ***
2025-11-27 03:20:47 (21160): Status Report: Elapsed Time: '6000.000000'
2025-11-27 03:20:47 (21160): Status Report: CPU Time: '19618.109375'
2025-11-27 05:01:14 (21160): Status Report: Elapsed Time: '12000.000000'
2025-11-27 05:01:14 (21160): Status Report: CPU Time: '42748.859375'
2025-11-27 06:41:40 (21160): Status Report: Elapsed Time: '18000.000000'
2025-11-27 06:41:40 (21160): Status Report: CPU Time: '65672.812500'
2025-11-27 08:22:05 (21160): Status Report: Elapsed Time: '24000.000000'
2025-11-27 08:22:05 (21160): Status Report: CPU Time: '88702.203125'
2025-11-27 10:02:28 (21160): Status Report: Elapsed Time: '30000.000000'
2025-11-27 10:02:28 (21160): Status Report: CPU Time: '111796.156250'
2025-11-27 11:26:33 (21160): Guest Log:  *** Job finished ***
2025-11-27 11:26:33 (21160): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:11,525 | INFO     | [payload] validate_post thread has finished
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:14,334 | INFO     | [data] queue_monitor thread has finished
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:26,428 | INFO     | [monitor] cgroup control has ended
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:27,170 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140412144101184)>', '<ExcThread(monitor, started 140411397990144)>']
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:27,189 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:27,189 | INFO     | [monitor] control thread has ended
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:32,194 | INFO     | all workflow threads have been joined
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:32,194 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:32,194 | INFO     | traces error code: 0
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:32,194 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:32,296 [wrapper] ==== pilot stdout END ====
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:32,301 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:32,305 [wrapper] pilotpid: 6099
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:32,310 [wrapper] Pilot exit status: 0
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:32,339 [wrapper] pandaids: 6893887141
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:32,382 [wrapper] cleanup supervisor_pilot 14409 6100
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:32,391 [wrapper] Test setup, not cleaning
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:32,397 [wrapper] apfmon messages muted
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:32,404 [wrapper] ==== wrapper stdout END ====
2025-11-27 11:26:33 (21160): Guest Log: 2025-11-27 17:26:32,411 [wrapper] ==== wrapper stderr END ====
2025-11-27 11:26:33 (21160): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 11:26:33 (21160): Guest Log:     "exeErrorCode": 0,
2025-11-27 11:26:33 (21160): Guest Log:     "exeErrorDiag": "",
2025-11-27 11:26:33 (21160): Guest Log:     "pilotErrorCode": 0,
2025-11-27 11:26:33 (21160): Guest Log:     "pilotErrorDiag": "",
2025-11-27 11:26:33 (21160): Guest Log:  *** Listing of results directory ***
2025-11-27 11:26:33 (21160): Guest Log: total 920576
2025-11-27 11:26:33 (21160): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 20 23:03 pilot3.tar.gz
2025-11-27 11:26:33 (21160): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 20 23:10 runpilot2-wrapper.sh
2025-11-27 11:26:33 (21160): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 20 23:10 queuedata.json
2025-11-27 11:26:33 (21160): Guest Log: -rwxr-xr-x. 1 atlas atlas      8949 Nov 27 07:40 init_data.xml
2025-11-27 11:26:33 (21160): Guest Log: -rwxr-xr-x. 1 atlas atlas    590106 Nov 27 07:40 input.tar.gz
2025-11-27 11:26:33 (21160): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 27 07:40 start_atlas.sh
2025-11-27 11:26:33 (21160): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 27 07:40 EVNT.47493127._000966.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 11:26:33 (21160): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 27 07:40 pandaJob.out
2025-11-27 11:26:33 (21160): Guest Log: -rw-------. 1 atlas atlas    991570 Nov 27 07:42 agis_schedconf.cvmfs.json
2025-11-27 11:26:33 (21160): Guest Log: drwx------. 5 atlas atlas      4096 Nov 27 07:42 pilot3
2025-11-27 11:26:33 (21160): Guest Log: -rw-------. 1 atlas atlas 926181820 Nov 27 17:25 HITS.47523449._009656.pool.root.1
2025-11-27 11:26:33 (21160): Guest Log: -rw-------. 1 atlas atlas      1044 Nov 27 17:25 memory_monitor_summary.json
2025-11-27 11:26:33 (21160): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 17:25 agis_ddmendpoints.agis.ALL.json
2025-11-27 11:26:33 (21160): Guest Log: -rw-------. 1 atlas atlas   1831886 Nov 27 17:25 log.47523449._009656.job.log.tgz.1
2025-11-27 11:26:33 (21160): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 17:26 pilot_heartbeat.json
2025-11-27 11:26:33 (21160): Guest Log: -rw-------. 1 atlas atlas      8664 Nov 27 17:26 heartbeat.json
2025-11-27 11:26:33 (21160): Guest Log: -rw-------. 1 atlas atlas      4612 Nov 27 17:26 pilotlog.txt
2025-11-27 11:26:33 (21160): Guest Log: -rw-------. 1 atlas atlas   4487647 Nov 27 17:26 log.47523449._009656.job.log.1
2025-11-27 11:26:33 (21160): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 17:26 output.list
2025-11-27 11:26:33 (21160): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 17:26 runtime_log
2025-11-27 11:26:33 (21160): Guest Log: -rw-------. 1 atlas atlas   6338560 Nov 27 17:26 result.tar.gz
2025-11-27 11:26:33 (21160): Guest Log: -rw-------. 1 atlas atlas       666 Nov 27 17:26 wxrMDmuySg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmreIKDmIfSMwn.diag
2025-11-27 11:26:33 (21160): Guest Log: -rw-r--r--. 1 atlas atlas      8756 Nov 27 17:26 runtime_log.err
2025-11-27 11:26:33 (21160): Guest Log: Looking for outputfile HITS.47523449._009656.pool.root.1
2025-11-27 11:26:33 (21160): Guest Log: HITS file was successfully produced
2025-11-27 11:26:33 (21160): Guest Log: -rw-------. 1 atlas atlas 926181820 Nov 27 17:25 /home/atlas/RunAtlas/HITS.47523449._009656.pool.root.1
2025-11-27 11:26:36 (21160): Guest Log: Successfully finished the ATLAS job!
2025-11-27 11:26:36 (21160): Guest Log: Copying the results back to the shared directory!
2025-11-27 11:26:36 (21160): Guest Log:  *** Contents of shared directory: ***
2025-11-27 11:26:37 (21160): Guest Log: total 1309600
2025-11-27 11:26:37 (21160): Guest Log: -rwxrwxrwx. 1 root root 407880682 Nov 27 07:40 ATLAS.root_0
2025-11-27 11:26:37 (21160): Guest Log: -rwxrwxrwx. 1 root root 926181820 Nov 27 17:26 HITS.pool.root.1
2025-11-27 11:26:37 (21160): Guest Log: -rwxrwxrwx. 1 root root      8949 Nov 27 07:40 init_data.xml
2025-11-27 11:26:37 (21160): Guest Log: -rwxrwxrwx. 1 root root    590106 Nov 21 22:53 input.tar.gz
2025-11-27 11:26:37 (21160): Guest Log: -rwxrwxrwx. 1 root root   6338560 Nov 27 17:26 result.tar.gz
2025-11-27 11:26:37 (21160): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 21 22:53 start_atlas.sh
2025-11-27 11:26:37 (21160): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 11:26:37 (21160): VM Completion File Detected.
2025-11-27 11:26:37 (21160): Powering off VM.
2025-11-27 11:26:39 (21160): Successfully stopped VM.
2025-11-27 11:26:39 (21160): Deregistering VM. (boinc_f100af19bc42810e, slot#0)
2025-11-27 11:26:39 (21160): Removing network bandwidth throttle group from VM.
2025-11-27 11:26:39 (21160): Removing VM from VirtualBox.
2025-11-27 11:26:44 (21160): called boinc_finish(0)

</stderr_txt>
]]>

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