Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
19:08:06 (2192069): wrapper (7.7.26015): starting
19:08:06 (2192069): wrapper: running run_atlas (--nthreads 2)
[2025-11-21 19:08:06] Arguments: --nthreads 2
[2025-11-21 19:08:06] Threads: 2
[2025-11-21 19:08:06] Checking for CVMFS
[2025-11-21 19:08:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 19:08:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 19:08:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 19:08:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 19:08:08] 2.13.3.0 2192238 0 24764 153138 3 1 3145358 4096001 0 130560 0 0 100.000 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-21 19:08:08] CVMFS is ok
[2025-11-21 19:08:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 19:08:08] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-21 19:08:08] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-21 19:08:08] Further information can be found at the LHC@home message board.
[2025-11-21 19:08:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 19:08:08] Checking for apptainer binary...
[2025-11-21 19:08:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 19:08:08] Running /usr/bin/apptainer --version
[2025-11-21 19:08:08] apptainer version 1.4.4
[2025-11-21 19:08:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 19:08:08] Ryzen-9-7950X3D-Zen4-Ubu24
[2025-11-21 19:08:08] apptainer works
[2025-11-21 19:08:08] Set ATHENA_PROC_NUMBER=2
[2025-11-21 19:08:08] Set ATHENA_CORE_NUMBER=2
[2025-11-21 19:08:08] Starting ATLAS job with PandaID=6894258911
[2025-11-21 19:08:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 09:28:04]  *** The last 200 lines of the pilot log: ***
[2025-11-22 09:28:05] 2025-11-22 08:27:31,762 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 09:28:05] 2025-11-22 08:27:32,094 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 09:28:05] 2025-11-22 08:27:32,097 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4295.0075625
[2025-11-22 09:28:05] 2025-11-22 08:27:32,100 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-6894258911/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 09:28:05] 2025-11-22 08:27:32,100 | INFO     | extracted standard info from prmon json
[2025-11-22 09:28:05] 2025-11-22 08:27:32,100 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 09:28:05] 2025-11-22 08:27:32,100 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 09:28:05] 2025-11-22 08:27:32,107 | INFO     | fitting pss+swap vs Time
[2025-11-22 09:28:05] 2025-11-22 08:27:32,107 | INFO     | sum of square deviations: 187088865990.0
[2025-11-22 09:28:05] 2025-11-22 08:27:32,114 | INFO     | sum of deviations: 230673201595.0
[2025-11-22 09:28:05] 2025-11-22 08:27:32,114 | INFO     | mean x: 1763774263.0
[2025-11-22 09:28:05] 2025-11-22 08:27:32,114 | INFO     | mean y: 1943383.6449704142
[2025-11-22 09:28:05] 2025-11-22 08:27:32,114 | INFO     | intersect: -2172720800.587234
[2025-11-22 09:28:05] 2025-11-22 08:27:32,115 | INFO     | chi2: 3.187432071000176
[2025-11-22 09:28:05] 2025-11-22 08:27:32,115 | INFO     | sum of square deviations: 183787371530.0
[2025-11-22 09:28:05] 2025-11-22 08:27:32,122 | INFO     | sum of deviations: 335340265339.0004
[2025-11-22 09:28:05] 2025-11-22 08:27:32,122 | INFO     | mean x: 1763774110.5
[2025-11-22 09:28:05] 2025-11-22 08:27:32,122 | INFO     | mean y: 1948208.8238095238
[2025-11-22 09:28:05] 2025-11-22 08:27:32,122 | INFO     | intersect: -3216251568.937218
[2025-11-22 09:28:05] 2025-11-22 08:27:32,123 | INFO     | chi2: 1.5783480404369097
[2025-11-22 09:28:05] 2025-11-22 08:27:32,123 | INFO     | current chi2=1.5783480404369097 (change=50.48214345344012 %)
[2025-11-22 09:28:05] 2025-11-22 08:27:32,123 | INFO     | sum of square deviations: 180524947570.0
[2025-11-22 09:28:05] 2025-11-22 08:27:32,130 | INFO     | sum of deviations: 332703534909.99994
[2025-11-22 09:28:05] 2025-11-22 08:27:32,130 | INFO     | mean x: 1763773958.0
[2025-11-22 09:28:05] 2025-11-22 08:27:32,130 | INFO     | mean y: 1948085.6634730538
[2025-11-22 09:28:05] 2025-11-22 08:27:32,130 | INFO     | intersect: -3248648790.3237643
[2025-11-22 09:28:05] 2025-11-22 08:27:32,131 | INFO     | chi2: 1.57786409773385
[2025-11-22 09:28:05] 2025-11-22 08:27:32,131 | INFO     | current chi2=1.57786409773385 (change=0.030661342787593485 %)
[2025-11-22 09:28:05] 2025-11-22 08:27:32,131 | INFO     | right removable region: 834
[2025-11-22 09:28:05] 2025-11-22 08:27:32,131 | INFO     | sum of square deviations: 183787371530.0
[2025-11-22 09:28:05] 2025-11-22 08:27:32,138 | INFO     | sum of deviations: 127063693813.99986
[2025-11-22 09:28:05] 2025-11-22 08:27:32,138 | INFO     | mean x: 1763774415.5
[2025-11-22 09:28:05] 2025-11-22 08:27:32,138 | INFO     | mean y: 1948155.8833333333
[2025-11-22 09:28:05] 2025-11-22 08:27:32,138 | INFO     | intersect: -1217459306.2418668
[2025-11-22 09:28:05] 2025-11-22 08:27:32,138 | INFO     | chi2: 1.6872989358948467
[2025-11-22 09:28:05] 2025-11-22 08:27:32,138 | INFO     | current chi2=1.6872989358948467 (change=47.06400330077015 %)
[2025-11-22 09:28:05] 2025-11-22 08:27:32,139 | INFO     | sum of square deviations: 180524947570.0
[2025-11-22 09:28:05] 2025-11-22 08:27:32,145 | INFO     | sum of deviations: 119300408095.00006
[2025-11-22 09:28:05] 2025-11-22 08:27:32,145 | INFO     | mean x: 1763774568.0
[2025-11-22 09:28:05] 2025-11-22 08:27:32,145 | INFO     | mean y: 1948519.4658682635
[2025-11-22 09:28:05] 2025-11-22 08:27:32,145 | INFO     | intersect: -1163646754.6631591
[2025-11-22 09:28:05] 2025-11-22 08:27:32,146 | INFO     | chi2: 1.6827996788120918
[2025-11-22 09:28:05] 2025-11-22 08:27:32,146 | INFO     | current chi2=1.6827996788120918 (change=0.2666544135742458 %)
[2025-11-22 09:28:05] 2025-11-22 08:27:32,146 | INFO     | left removable region: 20
[2025-11-22 09:28:05] 2025-11-22 08:27:32,146 | INFO     | sum of square deviations: 167244168327.5
[2025-11-22 09:28:05] 2025-11-22 08:27:32,152 | INFO     | sum of deviations: 196886005077.50003
[2025-11-22 09:28:05] 2025-11-22 08:27:32,152 | INFO     | mean x: 1763774537.5
[2025-11-22 09:28:05] 2025-11-22 08:27:32,152 | INFO     | mean y: 1954488.6670761672
[2025-11-22 09:28:05] 2025-11-22 08:27:32,152 | INFO     | intersect: -2074425967.6354458
[2025-11-22 09:28:05] 2025-11-22 08:27:32,152 | INFO     | chi2: 0.052642690732569754
[2025-11-22 09:28:05] 2025-11-22 08:27:32,153 | INFO     | current memory leak: 1.18 B/s (using 814 data points, chi2=0.05)
[2025-11-22 09:28:05] 2025-11-22 08:27:32,153 | INFO     | could have reported an average CPU frequency of 4441 MHz (32 samples)
[2025-11-22 09:28:05] 2025-11-22 08:27:32,153 | INFO     | ..............................
[2025-11-22 09:28:05] 2025-11-22 08:27:32,153 | INFO     | . Timing measurements:
[2025-11-22 09:28:05] 2025-11-22 08:27:32,153 | INFO     | . get job = 0 s
[2025-11-22 09:28:05] 2025-11-22 08:27:32,153 | INFO     | . initial setup = 1 s
[2025-11-22 09:28:05] 2025-11-22 08:27:32,153 | INFO     | . payload setup = 4 s
[2025-11-22 09:28:05] 2025-11-22 08:27:32,154 | INFO     | . stage-in = 0 s
[2025-11-22 09:28:05] 2025-11-22 08:27:32,154 | INFO     | . payload execution = 51520 s
[2025-11-22 09:28:05] 2025-11-22 08:27:32,154 | INFO     | . stage-out = 1 s
[2025-11-22 09:28:05] 2025-11-22 08:27:32,154 | INFO     | . log creation = 0 s
[2025-11-22 09:28:05] 2025-11-22 08:27:32,154 | INFO     | ..............................
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | 
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | job summary report
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | --------------------------------------------------
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | PanDA job id: 6894258911
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | task id: 47533967
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | errors: (none)
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | pilot state: finished 
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | transexitcode: 0
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | exeerrorcode: 0
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | exeerrordiag: 
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | exitcode: 0
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | exitmsg: OK
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | cpuconsumptiontime: 102993 s
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | nevents: 1000
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | neventsw: 0
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | pid: 2213608
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | pgrp: 2213608
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | corecount: 2
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | event service: False
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | sizes: {0: 2298592, 1: 2298791, 4: 2299053, 11: 2299081, 51528: 2348445, 51531: 2357453, 51533: 2357637, 51540: 2357883}
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | --------------------------------------------------
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | 
[2025-11-22 09:28:05] 2025-11-22 08:27:32,207 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,229 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 09:28:05] 2025-11-22 08:27:32,230 | INFO     | job 6894258911 has completed (purged errors)
[2025-11-22 09:28:05] 2025-11-22 08:27:32,230 | INFO     | overall cleanup function is called
[2025-11-22 09:28:05] 2025-11-22 08:27:33,238 | INFO     | --- collectZombieJob: --- 10, [2213608]
[2025-11-22 09:28:05] 2025-11-22 08:27:33,239 | INFO     | zombie collector waiting for pid 2213608
[2025-11-22 09:28:05] 2025-11-22 08:27:33,239 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 09:28:05] 2025-11-22 08:27:33,239 | INFO     | collected zombie processes
[2025-11-22 09:28:05] 2025-11-22 08:27:33,239 | INFO     | will attempt to kill all subprocesses of pid=2213608
[2025-11-22 09:28:05] 2025-11-22 08:27:33,296 | INFO     | process IDs to be killed: [2213608] (in reverse order)
[2025-11-22 09:28:05] 2025-11-22 08:27:33,352 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 09:28:05] 2025-11-22 08:27:33,352 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 09:28:05] 2025-11-22 08:27:33,354 | INFO     | did not find any defunct processes belonging to 2213608
[2025-11-22 09:28:05] 2025-11-22 08:27:33,356 | INFO     | did not find any defunct processes belonging to 2213608
[2025-11-22 09:28:05] 2025-11-22 08:27:33,357 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 09:28:05] 2025-11-22 08:27:33,357 | INFO     | ready for new job
[2025-11-22 09:28:05] 2025-11-22 08:27:33,357 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 09:28:05] 2025-11-22 08:27:33,360 | INFO     | ***************************************
[2025-11-22 09:28:05] 2025-11-22 08:27:33,360 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 09:28:05] 2025-11-22 08:27:33,360 | INFO     | ***************************************
[2025-11-22 09:28:05] 2025-11-22 08:27:33,360 | INFO     | 
[2025-11-22 09:28:05] 2025-11-22 08:27:33,361 | INFO     | architecture information:
[2025-11-22 09:28:05] 2025-11-22 08:27:33,362 | INFO     | executing command: cat /etc/os-release
[2025-11-22 09:28:05] 2025-11-22 08:27:33,377 | INFO     | cat /etc/os-release:
[2025-11-22 09:28:05] NAME="CentOS Linux"
[2025-11-22 09:28:05] VERSION="7 (Core)"
[2025-11-22 09:28:05] ID="centos"
[2025-11-22 09:28:05] ID_LIKE="rhel fedora"
[2025-11-22 09:28:05] VERSION_ID="7"
[2025-11-22 09:28:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 09:28:05] ANSI_COLOR="0;31"
[2025-11-22 09:28:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 09:28:05] HOME_URL="https://www.centos.org/"
[2025-11-22 09:28:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 09:28:05] 
[2025-11-22 09:28:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 09:28:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 09:28:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 09:28:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 09:28:05] 
[2025-11-22 09:28:05] 2025-11-22 08:27:33,378 | INFO     | ***************************************
[2025-11-22 09:28:05] 2025-11-22 08:27:33,880 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2025-11-22 09:28:05] 2025-11-22 08:27:33,905 | INFO     | sufficient remaining disk space (1762238922752 B)
[2025-11-22 09:28:05] 2025-11-22 08:27:33,905 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 09:28:05] 2025-11-22 08:27:33,905 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 09:28:05] 2025-11-22 08:27:33,905 | INFO     | update_server=False
[2025-11-22 09:28:05] 2025-11-22 08:27:33,905 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 09:28:05] 2025-11-22 08:27:33,905 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 09:28:05] 2025-11-22 08:27:34,146 | INFO     | all payload control threads have been joined
[2025-11-22 09:28:05] 2025-11-22 08:27:34,261 | INFO     | all data control threads have been joined
[2025-11-22 09:28:05] 2025-11-22 08:27:34,265 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 09:28:05] 2025-11-22 08:27:34,265 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 09:28:05] 2025-11-22 08:27:34,265 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 09:28:05] 2025-11-22 08:27:34,265 | INFO     | will abort loop
[2025-11-22 09:28:05] 2025-11-22 08:27:34,476 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 09:28:05] 2025-11-22 08:27:34,599 | INFO     | all job control threads have been joined
[2025-11-22 09:28:05] 2025-11-22 08:27:34,910 | INFO     | [job] retrieve thread has finished
[2025-11-22 09:28:05] 2025-11-22 08:27:34,910 | INFO     | [job] queue monitor thread has finished
[2025-11-22 09:28:05] 2025-11-22 08:27:34,964 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 09:28:05] 2025-11-22 08:27:35,015 | INFO     | [payload] failed_post thread has finished
[2025-11-22 09:28:05] 2025-11-22 08:27:35,151 | INFO     | [payload] control thread has finished
[2025-11-22 09:28:05] 2025-11-22 08:27:35,266 | INFO     | [data] control thread has finished
[2025-11-22 09:28:05] 2025-11-22 08:27:35,270 | INFO     | [job] job monitor thread has finished
[2025-11-22 09:28:05] 2025-11-22 08:27:35,453 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 09:28:05] 2025-11-22 08:27:35,601 | INFO     | [job] control thread has finished
[2025-11-22 09:28:05] 2025-11-22 08:27:35,719 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 09:28:05] 2025-11-22 08:27:35,826 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 09:28:05] 2025-11-22 08:27:36,065 | INFO     | [job] validate thread has finished
[2025-11-22 09:28:05] 2025-11-22 08:27:36,184 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 09:28:05] 2025-11-22 08:27:36,251 | INFO     | [data] copytool_in thread has finished
[2025-11-22 09:28:05] 2025-11-22 08:27:36,399 | INFO     | [payload] validate_post thread has finished
[2025-11-22 09:28:05] 2025-11-22 08:27:36,482 | INFO     | [data] copytool_out thread has finished
[2025-11-22 09:28:05] 2025-11-22 08:27:39,724 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 09:28:05] 2025-11-22 08:27:43,122 | INFO     | [monitor] cgroup control has ended
[2025-11-22 09:28:05] 2025-11-22 08:27:43,805 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124081009317696)>', '<ExcThread(monitor, started 124080372041472)>']
[2025-11-22 09:28:05] 2025-11-22 08:27:48,830 | INFO     | all workflow threads have been joined
[2025-11-22 09:28:05] 2025-11-22 08:27:48,831 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 09:28:05] 2025-11-22 08:27:48,831 | INFO     | traces error code: 0
[2025-11-22 09:28:05] 2025-11-22 08:27:48,831 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 09:28:05] 2025-11-22 08:28:04,795 | INFO     | PID=2200251 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 09:28:05] 2025-11-22 08:28:04,795 | INFO     | .. there are 2 such processes running
[2025-11-22 09:28:05] 2025-11-22 08:28:04,795 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 09:28:05] 2025-11-22 08:28:04,795 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 09:28:05] 2025-11-22 08:28:04,795 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 09:28:05] 2025-11-22 08:28:04,795 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 09:28:05] 2025-11-22 08:28:04,795 | INFO     | [monitor] control thread has ended
[2025-11-22 09:28:05] 2025-11-22 08:28:04,871 [wrapper] ==== pilot stdout END ====
[2025-11-22 09:28:05] 2025-11-22 08:28:04,882 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 09:28:05] 2025-11-22 08:28:04,884 [wrapper] pilotpid: 2200251
[2025-11-22 09:28:05] 2025-11-22 08:28:04,886 [wrapper] Pilot exit status: 0
[2025-11-22 09:28:05] 2025-11-22 08:28:04,900 [wrapper] pandaids: 6894258911
[2025-11-22 09:28:05] 2025-11-22 08:28:04,933 [wrapper] cleanup supervisor_pilot 2483536 2200253
[2025-11-22 09:28:05] 2025-11-22 08:28:04,935 [wrapper] Test setup, not cleaning
[2025-11-22 09:28:05] 2025-11-22 08:28:04,936 [wrapper] apfmon messages muted
[2025-11-22 09:28:05] 2025-11-22 08:28:04,938 [wrapper] ==== wrapper stdout END ====
[2025-11-22 09:28:05] 2025-11-22 08:28:04,939 [wrapper] ==== wrapper stderr END ====
[2025-11-22 09:28:05]  *** Error codes and diagnostics ***
[2025-11-22 09:28:05]     "exeErrorCode": 0,
[2025-11-22 09:28:05]     "exeErrorDiag": "",
[2025-11-22 09:28:05]     "pilotErrorCode": 0,
[2025-11-22 09:28:05]     "pilotErrorDiag": "",
[2025-11-22 09:28:05]  *** Listing of results directory ***
[2025-11-22 09:28:05] total 1292824
[2025-11-22 09:28:05] -rw-r--r-- 1 boinc boinc    576529 Nov 21 04:09 pilot3.tar.gz
[2025-11-22 09:28:05] -rwx------ 1 boinc boinc     36292 Nov 21 05:01 runpilot2-wrapper.sh
[2025-11-22 09:28:05] -rw-r--r-- 1 boinc boinc      5112 Nov 21 05:01 queuedata.json
[2025-11-22 09:28:05] -rw-r--r-- 1 boinc boinc       100 Nov 21 19:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 09:28:05] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 19:08 run_atlas
[2025-11-22 09:28:05] -rw-r--r-- 1 boinc boinc       105 Nov 21 19:08 job.xml
[2025-11-22 09:28:05] -rw-r--r-- 2 boinc boinc 408922523 Nov 21 19:08 EVNT.47493127._002176.pool.root.1
[2025-11-22 09:28:05] -rw-r--r-- 1 boinc boinc      9569 Nov 21 19:08 init_data.xml
[2025-11-22 09:28:05] -rw-r--r-- 2 boinc boinc     15847 Nov 21 19:08 start_atlas.sh
[2025-11-22 09:28:05] drwxrwx--x 2 boinc boinc      4096 Nov 21 19:08 shared
[2025-11-22 09:28:05] -rw-r--r-- 2 boinc boinc    590103 Nov 21 19:08 input.tar.gz
[2025-11-22 09:28:05] -rw-r--r-- 1 boinc boinc         0 Nov 21 19:08 boinc_lockfile
[2025-11-22 09:28:05] -rw-r--r-- 1 boinc boinc      2785 Nov 21 19:08 pandaJob.out
[2025-11-22 09:28:05] -rw------- 1 boinc boinc    989798 Nov 21 19:08 agis_schedconf.cvmfs.json
[2025-11-22 09:28:05] drwx------ 5 boinc boinc      4096 Nov 21 19:08 pilot3
[2025-11-22 09:28:05] -rw-r--r-- 1 boinc boinc       533 Nov 22 09:24 boinc_task_state.xml
[2025-11-22 09:28:05] -rw------- 1 boinc boinc 893489966 Nov 22 09:27 HITS.47533967._001480.pool.root.1
[2025-11-22 09:28:05] -rw------- 1 boinc boinc      1031 Nov 22 09:27 memory_monitor_summary.json
[2025-11-22 09:28:05] -rw------- 1 boinc boinc   1526164 Nov 22 09:27 agis_ddmendpoints.agis.ALL.json
[2025-11-22 09:28:05] -rw------- 1 boinc boinc   1317599 Nov 22 09:27 log.47533967._001480.job.log.tgz.1
[2025-11-22 09:28:05] -rw------- 1 boinc boinc        95 Nov 22 09:27 pilot_heartbeat.json
[2025-11-22 09:28:05] -rw------- 1 boinc boinc      8582 Nov 22 09:27 heartbeat.json
[2025-11-22 09:28:05] -rw-r--r-- 1 boinc boinc      8192 Nov 22 09:27 boinc_mmap_file
[2025-11-22 09:28:05] -rw-r--r-- 1 boinc boinc        29 Nov 22 09:27 wrapper_checkpoint.txt
[2025-11-22 09:28:05] -rw------- 1 boinc boinc       822 Nov 22 09:28 pilotlog.txt
[2025-11-22 09:28:05] -rw------- 1 boinc boinc   7438633 Nov 22 09:28 log.47533967._001480.job.log.1
[2025-11-22 09:28:05] -rw------- 1 boinc boinc       353 Nov 22 09:28 output.list
[2025-11-22 09:28:05] -rw-r--r-- 1 boinc boinc       620 Nov 22 09:28 runtime_log
[2025-11-22 09:28:05] -rw------- 1 boinc boinc   8775680 Nov 22 09:28 result.tar.gz
[2025-11-22 09:28:05] -rw------- 1 boinc boinc       666 Nov 22 09:28 x7MMDmQWXg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPzIKDmr2yZ2n.diag
[2025-11-22 09:28:05] -rw-r--r-- 1 boinc boinc      8970 Nov 22 09:28 runtime_log.err
[2025-11-22 09:28:05] -rw-r--r-- 1 boinc boinc     21345 Nov 22 09:28 stderr.txt
[2025-11-22 09:28:05] HITS file was successfully produced:
[2025-11-22 09:28:05] -rw------- 1 boinc boinc 893489966 Nov 22 09:27 shared/HITS.pool.root.1
[2025-11-22 09:28:05]  *** Contents of shared directory: ***
[2025-11-22 09:28:05] total 1281068
[2025-11-22 09:28:05] -rw-r--r-- 2 boinc boinc 408922523 Nov 21 19:08 ATLAS.root_0
[2025-11-22 09:28:05] -rw-r--r-- 2 boinc boinc     15847 Nov 21 19:08 start_atlas.sh
[2025-11-22 09:28:05] -rw-r--r-- 2 boinc boinc    590103 Nov 21 19:08 input.tar.gz
[2025-11-22 09:28:05] -rw------- 1 boinc boinc 893489966 Nov 22 09:27 HITS.pool.root.1
[2025-11-22 09:28:05] -rw------- 1 boinc boinc   8775680 Nov 22 09:28 result.tar.gz
09:28:06 (2192069): run_atlas exited; CPU time 103015.593081
09:28:06 (2192069): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN