Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:30:10 (4138722): wrapper (7.7.26015): starting
11:30:10 (4138722): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 11:30:10] Arguments: --nthreads 12
[2025-11-21 11:30:10] Threads: 12
[2025-11-21 11:30:10] Checking for CVMFS
[2025-11-21 11:30:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 11:30:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 11:30:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 11:30:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 11:30:12] 2.13.3.0 11959 23093 356004 153135 1 469 23983810 32935937 19205 16776704 0 85499843 99.483 116170790 34550 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 11:30:12] CVMFS is ok
[2025-11-21 11:30:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 11:30:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 11:30:12] Further information can be found at the LHC@home message board.
[2025-11-21 11:30:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 11:30:12] Checking for apptainer binary...
[2025-11-21 11:30:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 11:30:12] Running /usr/bin/apptainer --version
[2025-11-21 11:30:12] apptainer version 1.4.4-1.el9
[2025-11-21 11:30:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 11:30:12] c6-8-25-4.aglt2.org
[2025-11-21 11:30:12] apptainer works
[2025-11-21 11:30:12] Set ATHENA_PROC_NUMBER=12
[2025-11-21 11:30:12] Set ATHENA_CORE_NUMBER=12
[2025-11-21 11:30:12] Starting ATLAS job with PandaID=6893869745
[2025-11-21 11:30:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 06:59:28]  *** The last 200 lines of the pilot log: ***
[2025-11-22 06:59:29] 2025-11-22 11:58:39,227 | INFO     | time since job start (70061s) is within the limit (172800.0s)
[2025-11-22 06:59:29] 2025-11-22 11:58:41,236 | INFO     | time since job start (70063s) is within the limit (172800.0s)
[2025-11-22 06:59:29] 2025-11-22 11:58:41,656 | INFO     | monitor loop #3731: job 0:6893869745 is in state 'finished'
[2025-11-22 06:59:29] 2025-11-22 11:58:41,656 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 06:59:29] 2025-11-22 11:58:43,245 | INFO     | time since job start (70065s) is within the limit (172800.0s)
[2025-11-22 06:59:29] 2025-11-22 11:58:44,185 | INFO     | monitor loop #3732: job 0:6893869745 is in state 'finished'
[2025-11-22 06:59:29] 2025-11-22 11:58:44,185 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 06:59:29] 2025-11-22 11:58:45,268 | INFO     | time since job start (70067s) is within the limit (172800.0s)
[2025-11-22 06:59:29] 2025-11-22 11:58:46,712 | INFO     | monitor loop #3733: job 0:6893869745 is in state 'finished'
[2025-11-22 06:59:29] 2025-11-22 11:58:46,712 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 06:59:29] 2025-11-22 11:58:47,275 | INFO     | time since job start (70069s) is within the limit (172800.0s)
[2025-11-22 06:59:29] 2025-11-22 11:58:49,225 | INFO     | monitor loop #3734: job 0:6893869745 is in state 'finished'
[2025-11-22 06:59:29] 2025-11-22 11:58:49,225 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 06:59:29] 2025-11-22 11:58:49,287 | INFO     | time since job start (70071s) is within the limit (172800.0s)
[2025-11-22 06:59:29] 2025-11-22 11:58:49,713 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 06:59:29] 2025-11-22 11:58:49,796 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2647.1043437500007
[2025-11-22 06:59:29] 2025-11-22 11:58:49,896 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6893869745/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 06:59:29] 2025-11-22 11:58:49,988 | INFO     | extracted standard info from prmon json
[2025-11-22 06:59:29] 2025-11-22 11:58:49,989 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 06:59:29] 2025-11-22 11:58:49,989 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 06:59:29] 2025-11-22 11:58:50,573 | INFO     | fitting pss+swap vs Time
[2025-11-22 06:59:29] 2025-11-22 11:58:50,575 | INFO     | sum of square deviations: 466782771268.72003
[2025-11-22 06:59:29] 2025-11-22 11:58:50,723 | INFO     | sum of deviations: 1330089928726.1843
[2025-11-22 06:59:29] 2025-11-22 11:58:50,723 | INFO     | mean x: 1763777708.7041886
[2025-11-22 06:59:29] 2025-11-22 11:58:50,723 | INFO     | mean y: 3410218.0034904014
[2025-11-22 06:59:29] 2025-11-22 11:58:50,724 | INFO     | intersect: -5022445728.827587
[2025-11-22 06:59:29] 2025-11-22 11:58:50,725 | INFO     | chi2: 26.39379961493256
[2025-11-22 06:59:29] 2025-11-22 11:58:50,731 | INFO     | sum of square deviations: 460702783715.2972
[2025-11-22 06:59:29] 2025-11-22 11:58:50,787 | INFO     | sum of deviations: 1825287583465.8933
[2025-11-22 06:59:29] 2025-11-22 11:58:50,787 | INFO     | mean x: 1763777556.2287467
[2025-11-22 06:59:29] 2025-11-22 11:58:50,787 | INFO     | mean y: 3422633.6862401403
[2025-11-22 06:59:29] 2025-11-22 11:58:50,788 | INFO     | intersect: -6984599551.5012865
[2025-11-22 06:59:29] 2025-11-22 11:58:50,789 | INFO     | chi2: 22.396302304839946
[2025-11-22 06:59:29] 2025-11-22 11:58:50,789 | INFO     | current chi2=22.396302304839946 (change=15.145592405842889 %)
[2025-11-22 06:59:29] 2025-11-22 11:58:50,789 | INFO     | right removable region: 1140
[2025-11-22 06:59:29] 2025-11-22 11:58:50,795 | INFO     | sum of square deviations: 460698725850.3787
[2025-11-22 06:59:29] 2025-11-22 11:58:50,887 | INFO     | sum of deviations: 784462045335.254
[2025-11-22 06:59:29] 2025-11-22 11:58:50,891 | INFO     | mean x: 1763777861.2304995
[2025-11-22 06:59:29] 2025-11-22 11:58:50,891 | INFO     | mean y: 3423895.561787905
[2025-11-22 06:59:29] 2025-11-22 11:58:50,891 | INFO     | intersect: -2999876766.891694
[2025-11-22 06:59:29] 2025-11-22 11:58:50,895 | INFO     | chi2: 22.38781337728032
[2025-11-22 06:59:29] 2025-11-22 11:58:50,906 | INFO     | current chi2=22.38781337728032 (change=15.177754988280709 %)
[2025-11-22 06:59:29] 2025-11-22 11:58:50,906 | INFO     | left removable region: 10
[2025-11-22 06:59:29] 2025-11-22 11:58:50,908 | INFO     | sum of square deviations: 447505357658.1738
[2025-11-22 06:59:29] 2025-11-22 11:58:50,983 | INFO     | sum of deviations: 1069616245132.4685
[2025-11-22 06:59:29] 2025-11-22 11:58:50,983 | INFO     | mean x: 1763777830.7858407
[2025-11-22 06:59:29] 2025-11-22 11:58:50,983 | INFO     | mean y: 3446294.704424779
[2025-11-22 06:59:29] 2025-11-22 11:58:50,983 | INFO     | intersect: -4212291882.1200213
[2025-11-22 06:59:29] 2025-11-22 11:58:50,993 | INFO     | chi2: 16.375921381992992
[2025-11-22 06:59:29] 2025-11-22 11:58:50,993 | INFO     | current memory leak: 2.39 B/s (using 1130 data points, chi2=16.38)
[2025-11-22 06:59:29] 2025-11-22 11:58:50,995 | INFO     | could have reported an average CPU frequency of 2652 MHz (42 samples)
[2025-11-22 06:59:29] 2025-11-22 11:58:50,995 | INFO     | ..............................
[2025-11-22 06:59:29] 2025-11-22 11:58:50,996 | INFO     | . Timing measurements:
[2025-11-22 06:59:29] 2025-11-22 11:58:50,996 | INFO     | . get job = 0 s
[2025-11-22 06:59:29] 2025-11-22 11:58:50,996 | INFO     | . initial setup = 4 s
[2025-11-22 06:59:29] 2025-11-22 11:58:50,996 | INFO     | . payload setup = 36 s
[2025-11-22 06:59:29] 2025-11-22 11:58:50,996 | INFO     | . stage-in = 0 s
[2025-11-22 06:59:29] 2025-11-22 11:58:50,996 | INFO     | . payload execution = 69912 s
[2025-11-22 06:59:29] 2025-11-22 11:58:50,996 | INFO     | . stage-out = 21 s
[2025-11-22 06:59:29] 2025-11-22 11:58:50,996 | INFO     | . log creation = 6 s
[2025-11-22 06:59:29] 2025-11-22 11:58:50,996 | INFO     | ..............................
[2025-11-22 06:59:29] 2025-11-22 11:58:51,323 | INFO     | time since job start (70073s) is within the limit (172800.0s)
[2025-11-22 06:59:29] 2025-11-22 11:58:51,402 | INFO     | 
[2025-11-22 06:59:29] 2025-11-22 11:58:51,402 | INFO     | job summary report
[2025-11-22 06:59:29] 2025-11-22 11:58:51,403 | INFO     | --------------------------------------------------
[2025-11-22 06:59:29] 2025-11-22 11:58:51,403 | INFO     | PanDA job id: 6893869745
[2025-11-22 06:59:29] 2025-11-22 11:58:51,403 | INFO     | task id: 47523449
[2025-11-22 06:59:29] 2025-11-22 11:58:51,403 | INFO     | errors: (none)
[2025-11-22 06:59:29] 2025-11-22 11:58:51,403 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 06:59:29] 2025-11-22 11:58:51,403 | INFO     | pilot state: finished 
[2025-11-22 06:59:29] 2025-11-22 11:58:51,403 | INFO     | transexitcode: 0
[2025-11-22 06:59:29] 2025-11-22 11:58:51,403 | INFO     | exeerrorcode: 0
[2025-11-22 06:59:29] 2025-11-22 11:58:51,403 | INFO     | exeerrordiag: 
[2025-11-22 06:59:29] 2025-11-22 11:58:51,403 | INFO     | exitcode: 0
[2025-11-22 06:59:29] 2025-11-22 11:58:51,403 | INFO     | exitmsg: OK
[2025-11-22 06:59:29] 2025-11-22 11:58:51,403 | INFO     | cpuconsumptiontime: 267624 s
[2025-11-22 06:59:29] 2025-11-22 11:58:51,403 | INFO     | nevents: 1000
[2025-11-22 06:59:29] 2025-11-22 11:58:51,403 | INFO     | neventsw: 0
[2025-11-22 06:59:29] 2025-11-22 11:58:51,403 | INFO     | pid: 4153638
[2025-11-22 06:59:29] 2025-11-22 11:58:51,404 | INFO     | pgrp: 4153638
[2025-11-22 06:59:29] 2025-11-22 11:58:51,404 | INFO     | corecount: 12
[2025-11-22 06:59:29] 2025-11-22 11:58:51,404 | INFO     | event service: False
[2025-11-22 06:59:29] 2025-11-22 11:58:51,404 | INFO     | sizes: {0: 2297978, 1: 2298663, 2: 2298862, 13: 2298862, 24: 2298918, 25: 2299208, 35: 2299364, 69951: 2355402, 69953: 2355401, 69977: 2364451, 69980: 2364507, 700
[2025-11-22 06:59:29] 2025-11-22 11:58:51,404 | INFO     | --------------------------------------------------
[2025-11-22 06:59:29] 2025-11-22 11:58:51,404 | INFO     | 
[2025-11-22 06:59:29] 2025-11-22 11:58:51,404 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-22 06:59:29] 2025-11-22 11:58:51,563 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,564 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,564 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,564 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,564 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,564 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,564 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,564 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,564 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,564 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,564 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,564 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,564 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,564 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,565 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,565 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,565 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,565 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 06:59:29] 2025-11-22 11:58:51,565 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,565 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 06:59:29] 2025-11-22 11:58:51,565 | INFO     | job 6893869745 has completed (purged errors)
[2025-11-22 06:59:29] 2025-11-22 11:58:51,565 | INFO     | overall cleanup function is called
[2025-11-22 06:59:29] 2025-11-22 11:58:52,618 | INFO     | --- collectZombieJob: --- 10, [4153638]
[2025-11-22 06:59:29] 2025-11-22 11:58:52,618 | INFO     | zombie collector waiting for pid 4153638
[2025-11-22 06:59:29] 2025-11-22 11:58:52,618 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 06:59:29] 2025-11-22 11:58:52,618 | INFO     | collected zombie processes
[2025-11-22 06:59:29] 2025-11-22 11:58:52,618 | INFO     | will attempt to kill all subprocesses of pid=4153638
[2025-11-22 06:59:29] 2025-11-22 11:58:55,046 | INFO     | process IDs to be killed: [4153638] (in reverse order)
[2025-11-22 06:59:29] 2025-11-22 11:58:55,535 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 06:59:29] 2025-11-22 11:58:55,618 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 06:59:29] 2025-11-22 11:58:55,873 | INFO     | did not find any defunct processes belonging to 4153638
[2025-11-22 06:59:29] 2025-11-22 11:58:55,969 | INFO     | did not find any defunct processes belonging to 4153638
[2025-11-22 06:59:29] 2025-11-22 11:58:56,019 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 06:59:29] 2025-11-22 11:58:56,020 | INFO     | ready for new job
[2025-11-22 06:59:29] 2025-11-22 11:58:56,020 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 06:59:29] 2025-11-22 11:58:56,028 | INFO     | ***************************************
[2025-11-22 06:59:29] 2025-11-22 11:58:56,028 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 06:59:29] 2025-11-22 11:58:56,028 | INFO     | ***************************************
[2025-11-22 06:59:29] 2025-11-22 11:58:56,028 | INFO     | 
[2025-11-22 06:59:29] 2025-11-22 11:58:56,039 | INFO     | architecture information:
[2025-11-22 06:59:29] 2025-11-22 11:58:56,047 | INFO     | executing command: cat /etc/os-release
[2025-11-22 06:59:29] 2025-11-22 11:58:56,098 | INFO     | cat /etc/os-release:
[2025-11-22 06:59:29] NAME="CentOS Linux"
[2025-11-22 06:59:29] VERSION="7 (Core)"
[2025-11-22 06:59:29] ID="centos"
[2025-11-22 06:59:29] ID_LIKE="rhel fedora"
[2025-11-22 06:59:29] VERSION_ID="7"
[2025-11-22 06:59:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 06:59:29] ANSI_COLOR="0;31"
[2025-11-22 06:59:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 06:59:29] HOME_URL="https://www.centos.org/"
[2025-11-22 06:59:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 06:59:29] 
[2025-11-22 06:59:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 06:59:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 06:59:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 06:59:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 06:59:29] 
[2025-11-22 06:59:29] 2025-11-22 11:58:56,099 | INFO     | ***************************************
[2025-11-22 06:59:29] 2025-11-22 11:58:56,604 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-22 06:59:29] 2025-11-22 11:58:56,717 | INFO     | sufficient remaining disk space (63616057344 B)
[2025-11-22 06:59:29] 2025-11-22 11:58:56,718 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 06:59:29] 2025-11-22 11:58:56,718 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 06:59:29] 2025-11-22 11:58:56,718 | INFO     | update_server=False
[2025-11-22 06:59:29] 2025-11-22 11:58:56,718 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 06:59:29] 2025-11-22 11:58:56,718 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 06:59:29] 2025-11-22 11:58:56,719 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 06:59:29] 2025-11-22 11:58:56,881 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 06:59:29] 2025-11-22 11:58:56,881 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 06:59:29] 2025-11-22 11:58:56,881 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 06:59:29] 2025-11-22 11:58:56,881 | INFO     | will abort loop
[2025-11-22 06:59:29] 2025-11-22 11:58:57,375 | INFO     | all job control threads have been joined
[2025-11-22 06:59:29] 2025-11-22 11:58:57,712 | INFO     | all data control threads have been joined
[2025-11-22 06:59:29] 2025-11-22 11:58:57,725 | INFO     | [job] retrieve thread has finished
[2025-11-22 06:59:29] 2025-11-22 11:58:57,770 | INFO     | all payload control threads have been joined
[2025-11-22 06:59:29] 2025-11-22 11:58:57,780 | INFO     | [job] queue monitor thread has finished
[2025-11-22 06:59:29] 2025-11-22 11:58:57,902 | INFO     | [job] job monitor thread has finished
[2025-11-22 06:59:29] 2025-11-22 11:58:58,381 | INFO     | [job] control thread has finished
[2025-11-22 06:59:29] 2025-11-22 11:58:58,605 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 06:59:29] 2025-11-22 11:58:58,606 | INFO     | [data] copytool_in thread has finished
[2025-11-22 06:59:29] 2025-11-22 11:58:58,610 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 06:59:29] 2025-11-22 11:58:58,615 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 06:59:29] 2025-11-22 11:58:58,620 | INFO     | [job] validate thread has finished
[2025-11-22 06:59:29] 2025-11-22 11:58:58,721 | INFO     | [data] control thread has finished
[2025-11-22 06:59:29] 2025-11-22 11:58:58,744 | INFO     | [data] copytool_out thread has finished
[2025-11-22 06:59:29] 2025-11-22 11:58:58,777 | INFO     | [payload] control thread has finished
[2025-11-22 06:59:29] 2025-11-22 11:58:59,124 | INFO     | [payload] failed_post thread has finished
[2025-11-22 06:59:29] 2025-11-22 11:58:59,124 | INFO     | [payload] validate_post thread has finished
[2025-11-22 06:59:29] 2025-11-22 11:58:59,217 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 06:59:29] 2025-11-22 11:59:00,206 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 06:59:29] 2025-11-22 11:59:04,215 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 06:59:29] 2025-11-22 11:59:09,156 | INFO     | [monitor] cgroup control has ended
[2025-11-22 06:59:29] 2025-11-22 11:59:10,849 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139932074448704)>', '<ExcThread(monitor, started 139931443787520)>']
[2025-11-22 06:59:29] 2025-11-22 11:59:15,888 | INFO     | all workflow threads have been joined
[2025-11-22 06:59:29] 2025-11-22 11:59:15,941 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 06:59:29] 2025-11-22 11:59:15,942 | INFO     | traces error code: 0
[2025-11-22 06:59:29] 2025-11-22 11:59:15,943 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 06:59:29] 2025-11-22 11:59:27,541 | INFO     | PID=4143395 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 06:59:29] 2025-11-22 11:59:27,547 | INFO     | .. there are 48 such processes running
[2025-11-22 06:59:29] 2025-11-22 11:59:27,548 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 06:59:29] 2025-11-22 11:59:27,548 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 06:59:29] 2025-11-22 11:59:27,548 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 06:59:29] 2025-11-22 11:59:27,548 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 06:59:29] 2025-11-22 11:59:27,548 | INFO     | [monitor] control thread has ended
[2025-11-22 06:59:29] 2025-11-22 11:59:27,910 [wrapper] ==== pilot stdout END ====
[2025-11-22 06:59:29] 2025-11-22 11:59:27,981 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 06:59:29] 2025-11-22 11:59:28,030 [wrapper] pilotpid: 4143395
[2025-11-22 06:59:29] 2025-11-22 11:59:28,047 [wrapper] Pilot exit status: 0
[2025-11-22 06:59:29] 2025-11-22 11:59:28,121 [wrapper] pandaids: 6893869745
[2025-11-22 06:59:29] 2025-11-22 11:59:28,295 [wrapper] cleanup supervisor_pilot  780606 4143396
[2025-11-22 06:59:29] 2025-11-22 11:59:28,308 [wrapper] Test setup, not cleaning
[2025-11-22 06:59:29] 2025-11-22 11:59:28,329 [wrapper] apfmon messages muted
[2025-11-22 06:59:29] 2025-11-22 11:59:28,356 [wrapper] ==== wrapper stdout END ====
[2025-11-22 06:59:29] 2025-11-22 11:59:28,389 [wrapper] ==== wrapper stderr END ====
[2025-11-22 06:59:29]  *** Error codes and diagnostics ***
[2025-11-22 06:59:29]     "exeErrorCode": 0,
[2025-11-22 06:59:29]     "exeErrorDiag": "",
[2025-11-22 06:59:29]     "pilotErrorCode": 0,
[2025-11-22 06:59:29]     "pilotErrorDiag": "",
[2025-11-22 06:59:29]  *** Listing of results directory ***
[2025-11-22 06:59:29] total 1332308
[2025-11-22 06:59:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 09:06 pilot3.tar.gz
[2025-11-22 06:59:29] -rwx------. 1 boincer umatlas     36292 Nov 20 09:41 runpilot2-wrapper.sh
[2025-11-22 06:59:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 09:41 queuedata.json
[2025-11-22 06:59:29] -rw-r--r--. 1 boincer umatlas       100 Nov 21 11:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 06:59:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 11:30 run_atlas
[2025-11-22 06:59:29] -rw-r--r--. 1 boincer umatlas       105 Nov 21 11:30 job.xml
[2025-11-22 06:59:29] -rw-r--r--. 2 boincer umatlas 409985768 Nov 21 11:30 EVNT.47493127._000638.pool.root.1
[2025-11-22 06:59:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 11:30 start_atlas.sh
[2025-11-22 06:59:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 11:30 shared
[2025-11-22 06:59:29] -rw-r--r--. 2 boincer umatlas    590099 Nov 21 11:30 input.tar.gz
[2025-11-22 06:59:29] -rw-r--r--. 1 boincer umatlas         0 Nov 21 11:30 boinc_lockfile
[2025-11-22 06:59:29] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 11:30 pandaJob.out
[2025-11-22 06:59:29] -rw-------. 1 boincer umatlas        57 Nov 21 11:30 setup.sh.local
[2025-11-22 06:59:29] -rw-------. 1 boincer umatlas    989798 Nov 21 11:30 agis_schedconf.cvmfs.json
[2025-11-22 06:59:29] drwx------. 5 boincer umatlas      4096 Nov 21 11:30 pilot3
[2025-11-22 06:59:29] -rw-r--r--. 1 boincer umatlas       533 Nov 22 06:17 boinc_task_state.xml
[2025-11-22 06:59:29] -rw-------. 1 boincer umatlas 928604003 Nov 22 06:55 HITS.47523449._006374.pool.root.1
[2025-11-22 06:59:29] -rw-------. 1 boincer umatlas      1059 Nov 22 06:57 memory_monitor_summary.json
[2025-11-22 06:59:29] -rw-------. 1 boincer umatlas   1526164 Nov 22 06:58 agis_ddmendpoints.agis.ALL.json
[2025-11-22 06:59:29] -rw-------. 1 boincer umatlas   2656440 Nov 22 06:58 log.47523449._006374.job.log.tgz.1
[2025-11-22 06:59:29] -rw-r--r--. 1 boincer umatlas      6879 Nov 22 06:58 init_data.xml
[2025-11-22 06:59:29] -rw-------. 1 boincer umatlas      8630 Nov 22 06:58 heartbeat.json
[2025-11-22 06:59:29] -rw-------. 1 boincer umatlas       823 Nov 22 06:59 pilotlog.txt
[2025-11-22 06:59:29] -rw-------. 1 boincer umatlas        95 Nov 22 06:59 pilot_heartbeat.json
[2025-11-22 06:59:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 06:59 boinc_mmap_file
[2025-11-22 06:59:29] -rw-------. 1 boincer umatlas   8227231 Nov 22 06:59 log.47523449._006374.job.log.1
[2025-11-22 06:59:29] -rw-r--r--. 1 boincer umatlas        29 Nov 22 06:59 wrapper_checkpoint.txt
[2025-11-22 06:59:29] -rw-------. 1 boincer umatlas       353 Nov 22 06:59 output.list
[2025-11-22 06:59:29] -rw-r--r--. 1 boincer umatlas       620 Nov 22 06:59 runtime_log
[2025-11-22 06:59:29] -rw-------. 1 boincer umatlas  10905600 Nov 22 06:59 result.tar.gz
[2025-11-22 06:59:29] -rw-r--r--. 1 boincer umatlas      9350 Nov 22 06:59 runtime_log.err
[2025-11-22 06:59:29] -rw-------. 1 boincer umatlas       661 Nov 22 06:59 d1GLDmU1Kg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmb7HKDmEy9okn.diag
[2025-11-22 06:59:29] -rw-r--r--. 1 boincer umatlas     21801 Nov 22 06:59 stderr.txt
[2025-11-22 06:59:29] HITS file was successfully produced:
[2025-11-22 06:59:29] -rw-------. 1 boincer umatlas 928604003 Nov 22 06:55 shared/HITS.pool.root.1
[2025-11-22 06:59:29]  *** Contents of shared directory: ***
[2025-11-22 06:59:29] total 1318476
[2025-11-22 06:59:29] -rw-r--r--. 2 boincer umatlas 409985768 Nov 21 11:30 ATLAS.root_0
[2025-11-22 06:59:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 11:30 start_atlas.sh
[2025-11-22 06:59:29] -rw-r--r--. 2 boincer umatlas    590099 Nov 21 11:30 input.tar.gz
[2025-11-22 06:59:29] -rw-------. 1 boincer umatlas 928604003 Nov 22 06:55 HITS.pool.root.1
[2025-11-22 06:59:29] -rw-------. 1 boincer umatlas  10905600 Nov 22 06:59 result.tar.gz
06:59:30 (4138722): run_atlas exited; CPU time 270037.756033
06:59:30 (4138722): called boinc_finish(0)

</stderr_txt>
]]>

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