Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
00:03:45 (1105838): wrapper (7.7.26015): starting
00:03:45 (1105838): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 00:03:45] Arguments: --nthreads 4
[2025-11-26 00:03:45] Threads: 4
[2025-11-26 00:03:45] Checking for CVMFS
[2025-11-26 00:03:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:45] 2.12.7.0 2869 5243 64016 153300 1 81 3763662 6144000 841 130560 0 3230259 99.987 192705 3616 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.46:3128 1
[2025-11-26 00:03:45] CVMFS is ok
[2025-11-26 00:03:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:45] Checking for apptainer binary...
[2025-11-26 00:03:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:45] Running /usr/bin/apptainer --version
[2025-11-26 00:03:45] apptainer version 1.4.2
[2025-11-26 00:03:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:45] TS-P310
[2025-11-26 00:03:45] apptainer works
[2025-11-26 00:03:45] Set ATHENA_PROC_NUMBER=4
[2025-11-26 00:03:45] Set ATHENA_CORE_NUMBER=4
[2025-11-26 00:03:45] Starting ATLAS job with PandaID=6894252243
[2025-11-26 00:03:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc2/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:50:20]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:50:20] 2025-11-26 12:49:14,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:50:20] 2025-11-26 12:49:16,187 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 13:50:20] 2025-11-26 12:49:16,189 | INFO     | found 4 cores (4 cores per socket, 1 socket) HT, CPU MHz: 3699.9502500000003
[2025-11-26 13:50:20] 2025-11-26 12:49:16,190 | INFO     | using path: /var/lib/boinc2/slots/0/PanDA_Pilot-6894252243/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 13:50:20] 2025-11-26 12:49:16,191 | INFO     | extracted standard info from prmon json
[2025-11-26 13:50:20] 2025-11-26 12:49:16,191 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 13:50:20] 2025-11-26 12:49:16,191 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 13:50:20] 2025-11-26 12:49:16,201 | INFO     | fitting pss+swap vs Time
[2025-11-26 13:50:20] 2025-11-26 12:49:16,202 | INFO     | sum of square deviations: 166014435503.0
[2025-11-26 13:50:20] 2025-11-26 12:49:16,213 | INFO     | sum of deviations: 665016191030.9999
[2025-11-26 13:50:20] 2025-11-26 12:49:16,213 | INFO     | mean x: 1764136587.5
[2025-11-26 13:50:20] 2025-11-26 12:49:16,213 | INFO     | mean y: 2353613.8497536946
[2025-11-26 13:50:20] 2025-11-26 12:49:16,213 | INFO     | intersect: -7064377603.367054
[2025-11-26 13:50:20] 2025-11-26 12:49:16,214 | INFO     | chi2: 3.500487382599651
[2025-11-26 13:50:20] 2025-11-26 12:49:16,215 | INFO     | sum of square deviations: 162966508588.0
[2025-11-26 13:50:20] 2025-11-26 12:49:16,226 | INFO     | sum of deviations: 814155018685.0
[2025-11-26 13:50:20] 2025-11-26 12:49:16,226 | INFO     | mean x: 1764136435.0
[2025-11-26 13:50:20] 2025-11-26 12:49:16,226 | INFO     | mean y: 2361064.1573729864
[2025-11-26 13:50:20] 2025-11-26 12:49:16,226 | INFO     | intersect: -8810986811.08866
[2025-11-26 13:50:20] 2025-11-26 12:49:16,226 | INFO     | chi2: 1.7927440556706205
[2025-11-26 13:50:20] 2025-11-26 12:49:16,227 | INFO     | current chi2=1.7927440556706205 (change=48.785872944948835 %)
[2025-11-26 13:50:20] 2025-11-26 12:49:16,227 | INFO     | sum of square deviations: 159956117260.5
[2025-11-26 13:50:20] 2025-11-26 12:49:16,238 | INFO     | sum of deviations: 806545271674.0
[2025-11-26 13:50:20] 2025-11-26 12:49:16,256 | INFO     | mean x: 1764136282.5
[2025-11-26 13:50:20] 2025-11-26 12:49:16,256 | INFO     | mean y: 2360678.663341646
[2025-11-26 13:50:20] 2025-11-26 12:49:16,256 | INFO     | intersect: -8892927614.198257
[2025-11-26 13:50:20] 2025-11-26 12:49:16,257 | INFO     | chi2: 1.7902726190873273
[2025-11-26 13:50:20] 2025-11-26 12:49:16,257 | INFO     | current chi2=1.7902726190873273 (change=0.137857748041378 %)
[2025-11-26 13:50:20] 2025-11-26 12:49:16,257 | INFO     | right removable region: 801
[2025-11-26 13:50:20] 2025-11-26 12:49:16,258 | INFO     | sum of square deviations: 162966508588.0
[2025-11-26 13:50:20] 2025-11-26 12:49:16,269 | INFO     | sum of deviations: 529900929462.9999
[2025-11-26 13:50:20] 2025-11-26 12:49:16,269 | INFO     | time since job start (49524s) is within the limit (172800.0s)
[2025-11-26 13:50:20] 2025-11-26 12:49:16,269 | INFO     | mean x: 1764136740.0
[2025-11-26 13:50:20] 2025-11-26 12:49:16,269 | INFO     | mean y: 2360358.454770756
[2025-11-26 13:50:20] 2025-11-26 12:49:16,269 | INFO     | intersect: -5733896166.431359
[2025-11-26 13:50:20] 2025-11-26 12:49:16,270 | INFO     | chi2: 1.96234996762548
[2025-11-26 13:50:20] 2025-11-26 12:49:16,270 | INFO     | current chi2=1.96234996762548 (change=43.94066445204173 %)
[2025-11-26 13:50:20] 2025-11-26 12:49:16,271 | INFO     | sum of square deviations: 159956117260.5
[2025-11-26 13:50:20] 2025-11-26 12:49:16,281 | INFO     | sum of deviations: 503289408867.00006
[2025-11-26 13:50:20] 2025-11-26 12:49:16,282 | INFO     | mean x: 1764136892.5
[2025-11-26 13:50:20] 2025-11-26 12:49:16,282 | INFO     | mean y: 2361705.980049875
[2025-11-26 13:50:20] 2025-11-26 12:49:16,282 | INFO     | intersect: -5548357009.8339205
[2025-11-26 13:50:20] 2025-11-26 12:49:16,282 | INFO     | chi2: 1.945797336638627
[2025-11-26 13:50:20] 2025-11-26 12:49:16,283 | INFO     | current chi2=1.945797336638627 (change=0.8435106510018924 %)
[2025-11-26 13:50:20] 2025-11-26 12:49:16,283 | INFO     | left removable region: 20
[2025-11-26 13:50:20] 2025-11-26 12:49:16,283 | INFO     | sum of square deviations: 147717113830.0
[2025-11-26 13:50:20] 2025-11-26 12:49:16,294 | INFO     | sum of deviations: 590017675693.0
[2025-11-26 13:50:20] 2025-11-26 12:49:16,294 | INFO     | mean x: 1764136862.0
[2025-11-26 13:50:20] 2025-11-26 12:49:16,294 | INFO     | mean y: 2371749.250960307
[2025-11-26 13:50:20] 2025-11-26 12:49:16,294 | INFO     | intersect: -7044015117.740419
[2025-11-26 13:50:20] 2025-11-26 12:49:16,295 | INFO     | chi2: 0.1971416192314138
[2025-11-26 13:50:20] 2025-11-26 12:49:16,295 | INFO     | current memory leak: 3.99 B/s (using 781 data points, chi2=0.20)
[2025-11-26 13:50:20] 2025-11-26 12:49:16,295 | INFO     | could have reported an average CPU frequency of 3702 MHz (31 samples)
[2025-11-26 13:50:20] 2025-11-26 12:49:16,296 | INFO     | ..............................
[2025-11-26 13:50:20] 2025-11-26 12:49:16,296 | INFO     | . Timing measurements:
[2025-11-26 13:50:20] 2025-11-26 12:49:16,296 | INFO     | . get job = 0 s
[2025-11-26 13:50:20] 2025-11-26 12:49:16,296 | INFO     | . initial setup = 1 s
[2025-11-26 13:50:20] 2025-11-26 12:49:16,296 | INFO     | . payload setup = 3 s
[2025-11-26 13:50:20] 2025-11-26 12:49:16,296 | INFO     | . stage-in = 0 s
[2025-11-26 13:50:20] 2025-11-26 12:49:16,296 | INFO     | . payload execution = 49497 s
[2025-11-26 13:50:20] 2025-11-26 12:49:16,296 | INFO     | . stage-out = 1 s
[2025-11-26 13:50:20] 2025-11-26 12:49:16,296 | INFO     | . log creation = 0 s
[2025-11-26 13:50:20] 2025-11-26 12:49:16,296 | INFO     | ..............................
[2025-11-26 13:50:20] 2025-11-26 12:49:16,670 | INFO     | 
[2025-11-26 13:50:20] 2025-11-26 12:49:16,670 | INFO     | job summary report
[2025-11-26 13:50:20] 2025-11-26 12:49:16,670 | INFO     | --------------------------------------------------
[2025-11-26 13:50:20] 2025-11-26 12:49:16,670 | INFO     | PanDA job id: 6894252243
[2025-11-26 13:50:20] 2025-11-26 12:49:16,671 | INFO     | task id: 47533967
[2025-11-26 13:50:20] 2025-11-26 12:49:16,671 | INFO     | errors: (none)
[2025-11-26 13:50:20] 2025-11-26 12:49:16,671 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 13:50:20] 2025-11-26 12:49:16,671 | INFO     | pilot state: finished 
[2025-11-26 13:50:20] 2025-11-26 12:49:16,671 | INFO     | transexitcode: 0
[2025-11-26 13:50:20] 2025-11-26 12:49:16,671 | INFO     | exeerrorcode: 0
[2025-11-26 13:50:20] 2025-11-26 12:49:16,671 | INFO     | exeerrordiag: 
[2025-11-26 13:50:20] 2025-11-26 12:49:16,671 | INFO     | exitcode: 0
[2025-11-26 13:50:20] 2025-11-26 12:49:16,671 | INFO     | exitmsg: OK
[2025-11-26 13:50:20] 2025-11-26 12:49:16,671 | INFO     | cpuconsumptiontime: 194652 s
[2025-11-26 13:50:20] 2025-11-26 12:49:16,671 | INFO     | nevents: 1000
[2025-11-26 13:50:20] 2025-11-26 12:49:16,671 | INFO     | neventsw: 0
[2025-11-26 13:50:20] 2025-11-26 12:49:16,671 | INFO     | pid: 1115965
[2025-11-26 13:50:20] 2025-11-26 12:49:16,671 | INFO     | pgrp: 1115965
[2025-11-26 13:50:20] 2025-11-26 12:49:16,672 | INFO     | corecount: 4
[2025-11-26 13:50:20] 2025-11-26 12:49:16,672 | INFO     | event service: False
[2025-11-26 13:50:20] 2025-11-26 12:49:16,672 | INFO     | sizes: {0: 2284314, 3: 2284576, 11: 2284604, 49504: 2333091, 49505: 2333090, 49507: 2342142, 49508: 2342326, 49511: 2342572}
[2025-11-26 13:50:20] 2025-11-26 12:49:16,672 | INFO     | --------------------------------------------------
[2025-11-26 13:50:20] 2025-11-26 12:49:16,672 | INFO     | 
[2025-11-26 13:50:20] 2025-11-26 12:49:16,672 | INFO     | executing command: ls -lF /var/lib/boinc2/slots/0
[2025-11-26 13:50:20] 2025-11-26 12:49:16,686 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,686 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,686 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,686 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,686 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,686 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,686 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,687 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,687 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,687 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,687 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,687 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,687 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,687 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,687 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,687 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,687 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,687 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 13:50:20] 2025-11-26 12:49:16,687 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,687 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 13:50:20] 2025-11-26 12:49:16,688 | INFO     | job 6894252243 has completed (purged errors)
[2025-11-26 13:50:20] 2025-11-26 12:49:16,688 | INFO     | overall cleanup function is called
[2025-11-26 13:50:20] 2025-11-26 12:49:17,699 | INFO     | --- collectZombieJob: --- 10, [1115965]
[2025-11-26 13:50:20] 2025-11-26 12:49:17,699 | INFO     | zombie collector waiting for pid 1115965
[2025-11-26 13:50:20] 2025-11-26 12:49:17,699 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 13:50:20] 2025-11-26 12:49:17,699 | INFO     | collected zombie processes
[2025-11-26 13:50:20] 2025-11-26 12:49:17,699 | INFO     | will attempt to kill all subprocesses of pid=1115965
[2025-11-26 13:50:20] 2025-11-26 12:49:17,768 | INFO     | process IDs to be killed: [1115965] (in reverse order)
[2025-11-26 13:50:20] 2025-11-26 12:49:17,795 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 13:50:20] 2025-11-26 12:49:17,796 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 13:50:20] 2025-11-26 12:49:17,798 | INFO     | did not find any defunct processes belonging to 1115965
[2025-11-26 13:50:20] 2025-11-26 12:49:17,800 | INFO     | did not find any defunct processes belonging to 1115965
[2025-11-26 13:50:20] 2025-11-26 12:49:17,801 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 13:50:20] 2025-11-26 12:49:17,801 | INFO     | ready for new job
[2025-11-26 13:50:20] 2025-11-26 12:49:17,801 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 13:50:20] 2025-11-26 12:49:17,804 | INFO     | ***************************************
[2025-11-26 13:50:20] 2025-11-26 12:49:17,804 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 13:50:20] 2025-11-26 12:49:17,804 | INFO     | ***************************************
[2025-11-26 13:50:20] 2025-11-26 12:49:17,804 | INFO     | 
[2025-11-26 13:50:20] 2025-11-26 12:49:17,804 | INFO     | architecture information:
[2025-11-26 13:50:20] 2025-11-26 12:49:17,805 | INFO     | executing command: cat /etc/os-release
[2025-11-26 13:50:20] 2025-11-26 12:49:17,813 | INFO     | cat /etc/os-release:
[2025-11-26 13:50:20] NAME="CentOS Linux"
[2025-11-26 13:50:20] VERSION="7 (Core)"
[2025-11-26 13:50:20] ID="centos"
[2025-11-26 13:50:20] ID_LIKE="rhel fedora"
[2025-11-26 13:50:20] VERSION_ID="7"
[2025-11-26 13:50:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 13:50:20] ANSI_COLOR="0;31"
[2025-11-26 13:50:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 13:50:20] HOME_URL="https://www.centos.org/"
[2025-11-26 13:50:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 13:50:20] 
[2025-11-26 13:50:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 13:50:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 13:50:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 13:50:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 13:50:20] 
[2025-11-26 13:50:20] 2025-11-26 12:49:17,813 | INFO     | ***************************************
[2025-11-26 13:50:20] 2025-11-26 12:49:18,316 | INFO     | executing command: df -mP /var/lib/boinc2/slots/0
[2025-11-26 13:50:20] 2025-11-26 12:49:18,325 | INFO     | sufficient remaining disk space (72805777408 B)
[2025-11-26 13:50:20] 2025-11-26 12:49:18,326 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 13:50:20] 2025-11-26 12:49:18,326 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 13:50:20] 2025-11-26 12:49:18,326 | INFO     | update_server=False
[2025-11-26 13:50:20] 2025-11-26 12:49:18,326 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 13:50:20] 2025-11-26 12:49:18,326 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:50:20] 2025-11-26 12:49:18,360 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:50:20] 2025-11-26 12:49:18,391 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:50:20] 2025-11-26 12:49:18,391 | INFO     | aborting loop
[2025-11-26 13:50:20] 2025-11-26 12:49:18,654 | INFO     | all payload control threads have been joined
[2025-11-26 13:50:20] 2025-11-26 12:49:18,868 | INFO     | all data control threads have been joined
[2025-11-26 13:50:20] 2025-11-26 12:49:18,898 | INFO     | all job control threads have been joined
[2025-11-26 13:50:20] 2025-11-26 12:49:19,331 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:50:20] 2025-11-26 12:49:19,331 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:50:20] 2025-11-26 12:49:19,396 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:50:20] 2025-11-26 12:49:19,424 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:50:20] 2025-11-26 12:49:19,486 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:50:20] 2025-11-26 12:49:19,659 | INFO     | [payload] control thread has finished
[2025-11-26 13:50:20] 2025-11-26 12:49:19,871 | INFO     | [data] control thread has finished
[2025-11-26 13:50:20] 2025-11-26 12:49:19,903 | INFO     | [job] control thread has finished
[2025-11-26 13:50:20] 2025-11-26 12:49:19,918 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:50:20] 2025-11-26 12:49:20,304 | INFO     | [job] validate thread has finished
[2025-11-26 13:50:20] 2025-11-26 12:49:20,364 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:50:20] 2025-11-26 12:49:20,555 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:50:20] 2025-11-26 12:49:20,578 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:50:20] 2025-11-26 12:49:20,756 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:50:20] 2025-11-26 12:49:20,820 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:50:20] 2025-11-26 12:49:23,428 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:50:20] 2025-11-26 12:49:28,891 | INFO     | job.realtimelogging is not enabled
[2025-11-26 13:50:20] 2025-11-26 12:49:29,894 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:50:20] 2025-11-26 12:49:49,409 | INFO     | PID=1109543 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 13:50:20] 2025-11-26 12:49:49,410 | INFO     | .. there are 2 such processes running
[2025-11-26 13:50:20] 2025-11-26 12:49:49,410 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 13:50:20] 2025-11-26 12:49:49,410 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 13:50:20] 2025-11-26 12:49:49,410 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 13:50:20] 2025-11-26 12:50:13,931 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:50:20] 2025-11-26 12:50:14,933 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140123364747072)>', '<ExcThread(monitor, started 140122871805696)>']
[2025-11-26 13:50:20] 2025-11-26 12:50:15,527 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:50:20] 2025-11-26 12:50:15,528 | INFO     | [monitor] control thread has ended
[2025-11-26 13:50:20] 2025-11-26 12:50:19,957 | INFO     | all workflow threads have been joined
[2025-11-26 13:50:20] 2025-11-26 12:50:19,958 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:50:20] 2025-11-26 12:50:19,958 | INFO     | traces error code: 0
[2025-11-26 13:50:20] 2025-11-26 12:50:19,958 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:50:20] 2025-11-26 12:50:20,035 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:50:20] 2025-11-26 12:50:20,036 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:50:20] 2025-11-26 12:50:20,038 [wrapper] pilotpid: 1109543
[2025-11-26 13:50:20] 2025-11-26 12:50:20,040 [wrapper] Pilot exit status: 0
[2025-11-26 13:50:20] 2025-11-26 12:50:20,046 [wrapper] pandaids: 6894252243
[2025-11-26 13:50:20] 2025-11-26 12:50:20,064 [wrapper] cleanup supervisor_pilot 1276545 1109544
[2025-11-26 13:50:20] 2025-11-26 12:50:20,066 [wrapper] Test setup, not cleaning
[2025-11-26 13:50:20] 2025-11-26 12:50:20,068 [wrapper] apfmon messages muted
[2025-11-26 13:50:20] 2025-11-26 12:50:20,069 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:50:20] 2025-11-26 12:50:20,071 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:50:20]  *** Error codes and diagnostics ***
[2025-11-26 13:50:20]     "exeErrorCode": 0,
[2025-11-26 13:50:20]     "exeErrorDiag": "",
[2025-11-26 13:50:20]     "pilotErrorCode": 0,
[2025-11-26 13:50:20]     "pilotErrorDiag": "",
[2025-11-26 13:50:20]  *** Listing of results directory ***
[2025-11-26 13:50:20] insgesamt 1331996
[2025-11-26 13:50:20] -rw-r--r-- 1 boinc boinc    576529 21. Nov 02:54 pilot3.tar.gz
[2025-11-26 13:50:20] -rwx------ 1 boinc boinc     36292 21. Nov 02:57 runpilot2-wrapper.sh
[2025-11-26 13:50:20] -rw-r--r-- 1 boinc boinc      5112 21. Nov 02:57 queuedata.json
[2025-11-26 13:50:20] -rw-r--r-- 1 boinc boinc       100 26. Nov 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:50:20] -rwxr-xr-x 1 boinc boinc      7986 26. Nov 00:03 run_atlas
[2025-11-26 13:50:20] -rw-r--r-- 1 boinc boinc       105 26. Nov 00:03 job.xml
[2025-11-26 13:50:20] -rw-r--r-- 1 boinc boinc      6767 26. Nov 00:03 init_data.xml
[2025-11-26 13:50:20] -rw-r--r-- 2 boinc boinc 408689612 26. Nov 00:03 EVNT.47493127._002107.pool.root.1
[2025-11-26 13:50:20] drwxrwx--x 2 boinc boinc      4096 26. Nov 00:03 shared
[2025-11-26 13:50:20] -rw-r--r-- 2 boinc boinc    590104 26. Nov 00:03 input.tar.gz
[2025-11-26 13:50:20] -rw-r--r-- 2 boinc boinc     15847 26. Nov 00:03 start_atlas.sh
[2025-11-26 13:50:20] -rw-r--r-- 1 boinc boinc         0 26. Nov 00:03 boinc_lockfile
[2025-11-26 13:50:20] -rw-r--r-- 1 boinc boinc      2785 26. Nov 00:03 pandaJob.out
[2025-11-26 13:50:20] -rw------- 1 boinc boinc        52 26. Nov 00:03 setup.sh.local
[2025-11-26 13:50:20] -rw------- 1 boinc boinc    991877 26. Nov 00:03 agis_schedconf.cvmfs.json
[2025-11-26 13:50:20] drwx------ 5 boinc boinc      4096 26. Nov 00:03 pilot3
[2025-11-26 13:50:20] -rw-r--r-- 1 boinc boinc       532 26. Nov 13:44 boinc_task_state.xml
[2025-11-26 13:50:20] -rw------- 1 boinc boinc 934127916 26. Nov 13:48 HITS.47533967._000790.pool.root.1
[2025-11-26 13:50:20] -rw------- 1 boinc boinc      1027 26. Nov 13:49 memory_monitor_summary.json
[2025-11-26 13:50:20] -rw------- 1 boinc boinc        95 26. Nov 13:49 pilot_heartbeat.json
[2025-11-26 13:50:20] -rw------- 1 boinc boinc   1516240 26. Nov 13:49 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:50:20] -rw------- 1 boinc boinc   1552812 26. Nov 13:49 log.47533967._000790.job.log.tgz.1
[2025-11-26 13:50:20] -rw------- 1 boinc boinc      8568 26. Nov 13:49 heartbeat.json
[2025-11-26 13:50:20] -rw-r--r-- 1 boinc boinc        29 26. Nov 13:50 wrapper_checkpoint.txt
[2025-11-26 13:50:20] -rw-r--r-- 1 boinc boinc      8192 26. Nov 13:50 boinc_mmap_file
[2025-11-26 13:50:20] -rw------- 1 boinc boinc      4896 26. Nov 13:50 pilotlog.txt
[2025-11-26 13:50:20] -rw------- 1 boinc boinc   7055272 26. Nov 13:50 log.47533967._000790.job.log.1
[2025-11-26 13:50:20] -rw------- 1 boinc boinc       353 26. Nov 13:50 output.list
[2025-11-26 13:50:20] -rw-r--r-- 1 boinc boinc       620 26. Nov 13:50 runtime_log
[2025-11-26 13:50:20] -rw------- 1 boinc boinc   8632320 26. Nov 13:50 result.tar.gz
[2025-11-26 13:50:20] -rw------- 1 boinc boinc       653 26. Nov 13:50 vrRNDmcZVg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5qIKDmQDZG1m.diag
[2025-11-26 13:50:20] -rw-r--r-- 1 boinc boinc      9304 26. Nov 13:50 runtime_log.err
[2025-11-26 13:50:20] -rw-r--r-- 1 boinc boinc     20916 26. Nov 13:50 stderr.txt
[2025-11-26 13:50:20] HITS file was successfully produced:
[2025-11-26 13:50:20] -rw------- 1 boinc boinc 934127916 26. Nov 13:48 shared/HITS.pool.root.1
[2025-11-26 13:50:20]  *** Contents of shared directory: ***
[2025-11-26 13:50:20] insgesamt 1320384
[2025-11-26 13:50:20] -rw-r--r-- 2 boinc boinc 408689612 26. Nov 00:03 ATLAS.root_0
[2025-11-26 13:50:20] -rw-r--r-- 2 boinc boinc    590104 26. Nov 00:03 input.tar.gz
[2025-11-26 13:50:20] -rw-r--r-- 2 boinc boinc     15847 26. Nov 00:03 start_atlas.sh
[2025-11-26 13:50:20] -rw------- 1 boinc boinc 934127916 26. Nov 13:48 HITS.pool.root.1
[2025-11-26 13:50:20] -rw------- 1 boinc boinc   8632320 26. Nov 13:50 result.tar.gz
13:50:21 (1105838): run_atlas exited; CPU time 194878.709262
13:50:21 (1105838): called boinc_finish(0)

</stderr_txt>
]]>

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