Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-22 06:56:36 (99879): vboxwrapper version 26210
2025-11-22 06:56:36 (99879): BOINC client version: 8.2.2
2025-11-22 06:56:36 (99879): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-11-22 06:56:36 (99879): Successfully copied 'init_data.xml' to the shared directory.
2025-11-22 06:56:36 (99879): Create VM. (boinc_5be7eed8c4be78c1, slot#0)
2025-11-22 06:56:37 (99879): Setting Memory Size for VM. (4400MB)
2025-11-22 06:56:37 (99879): Setting CPU Count for VM. (4)
2025-11-22 06:56:37 (99879): Setting Chipset Options for VM.
2025-11-22 06:56:37 (99879): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-22 06:56:37 (99879): Setting Boot Options for VM.
2025-11-22 06:56:37 (99879): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-22 06:56:37 (99879): Enabling VM Network Access.
2025-11-22 06:56:37 (99879): Disabling USB Support for VM.
2025-11-22 06:56:37 (99879): Disabling COM Port Support for VM.
2025-11-22 06:56:37 (99879): Disabling LPT Port Support for VM.
2025-11-22 06:56:37 (99879): Disabling Audio Support for VM.
2025-11-22 06:56:37 (99879): Disabling Clipboard Support for VM.
2025-11-22 06:56:37 (99879): Disabling Drag and Drop Support for VM.
2025-11-22 06:56:37 (99879): Adding storage controller(s) to VM.
2025-11-22 06:56:37 (99879): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-22 06:56:37 (99879): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-22 06:56:37 (99879): forwarding host port 41287 to guest port 80
2025-11-22 06:56:37 (99879): Enabling remote desktop for VM.
2025-11-22 06:56:38 (99879): Enabling shared directory for VM.
2025-11-22 06:56:38 (99879): Starting VM using VBoxManage interface. (boinc_5be7eed8c4be78c1, slot#0)
2025-11-22 06:56:39 (99879): Successfully started VM. (PID = '100155')
2025-11-22 06:56:39 (99879): Reporting VM Process ID to BOINC.
2025-11-22 06:56:39 (99879): Guest Log: BIOS: VirtualBox 7.1.10
2025-11-22 06:56:39 (99879): Guest Log: CPUID EDX: 0x178bfbff
2025-11-22 06:56:39 (99879): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-22 06:56:39 (99879): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-22 06:56:39 (99879): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-22 06:56:39 (99879): Detected: Web Application Enabled (http://localhost:41287)
2025-11-22 06:56:39 (99879): Detected: Remote Desktop Enabled (localhost:57717)
2025-11-22 06:56:39 (99879): Preference change detected
2025-11-22 06:56:39 (99879): Setting CPU throttle for VM. (100%)
2025-11-22 06:56:39 (99879): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-22 06:56:41 (99879): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-22 06:56:41 (99879): Guest Log: BIOS: Booting from Hard Disk...
2025-11-22 06:56:44 (99879): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-22 06:56:44 (99879): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-22 06:56:44 (99879): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-22 06:56:51 (99879): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-22 06:56:51 (99879): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-22 06:56:58 (99879): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-22 06:56:58 (99879): Guest Log: 00:00:00.000409 main     Log opened 2025-11-22T05:56:56.921526000Z
2025-11-22 06:56:58 (99879): Guest Log: 00:00:00.000770 main     OS Product: Linux
2025-11-22 06:56:58 (99879): Guest Log: 00:00:00.000856 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-22 06:56:58 (99879): Guest Log: 00:00:00.000918 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-22 06:56:58 (99879): Guest Log: 00:00:00.000981 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-22 06:56:58 (99879): Guest Log: 00:00:00.000984 main     Process ID: 1306
2025-11-22 06:56:58 (99879): Guest Log: 00:00:00.000986 main     Package type: LINUX_64BITS_GENERIC
2025-11-22 06:56:58 (99879): Guest Log: 00:00:00.003397 main     5.2.32 r132073 started. Verbose level = 0
2025-11-22 06:56:59 (99879): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-22 06:56:59 (99879): Guest Log: [INFO] Mounting shared directory
2025-11-22 06:56:59 (99879): Guest Log: [INFO] Checking for init_data.xml
2025-11-22 06:57:26 (99879): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-22 06:57:26 (99879): Guest Log: [INFO] Detected branch: prod
2025-11-22 06:57:26 (99879): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-22 06:57:26 (99879): Guest Log: Copying input files
2025-11-22 06:57:29 (99879): Guest Log: Copied input files into RunAtlas.
2025-11-22 06:57:29 (99879): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-22 06:57:29 (99879): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-22 06:57:29 (99879): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-22 06:57:29 (99879): Guest Log: Further information can be found at the LHC@home message board.
2025-11-22 06:57:41 (99879): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-22 06:57:42 (99879): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-22 06:57:42 (99879): Guest Log: 2.6.3.0 1605 0 32208 153161 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-22 06:57:43 (99879): Guest Log: copied the webapp to /var/www
2025-11-22 06:57:43 (99879): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-22 06:57:43 (99879): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-22 06:57:44 (99879): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-22 06:57:44 (99879): Guest Log:  *** Starting ATLAS job. (PandaID=6894247011 taskID=47533967) ***
2025-11-22 08:35:40 (99879): Status Report: Elapsed Time: '6000.000000'
2025-11-22 08:35:40 (99879): Status Report: CPU Time: '22271.790000'
2025-11-22 10:14:40 (99879): Status Report: Elapsed Time: '12000.000000'
2025-11-22 10:14:40 (99879): Status Report: CPU Time: '45989.540000'
2025-11-22 11:53:40 (99879): Status Report: Elapsed Time: '18000.000000'
2025-11-22 11:53:40 (99879): Status Report: CPU Time: '69708.460000'
2025-11-22 13:32:41 (99879): Status Report: Elapsed Time: '24000.000000'
2025-11-22 13:32:41 (99879): Status Report: CPU Time: '93434.940000'
2025-11-22 15:11:41 (99879): Status Report: Elapsed Time: '30000.000000'
2025-11-22 15:11:41 (99879): Status Report: CPU Time: '117161.420000'
2025-11-22 16:50:42 (99879): Status Report: Elapsed Time: '36000.000000'
2025-11-22 16:50:42 (99879): Status Report: CPU Time: '140887.080000'
2025-11-22 18:29:42 (99879): Status Report: Elapsed Time: '42000.000000'
2025-11-22 18:29:42 (99879): Status Report: CPU Time: '164612.580000'
2025-11-22 20:08:42 (99879): Status Report: Elapsed Time: '48000.000000'
2025-11-22 20:08:42 (99879): Status Report: CPU Time: '188335.840000'
2025-11-22 21:47:43 (99879): Status Report: Elapsed Time: '54000.000000'
2025-11-22 21:47:43 (99879): Status Report: CPU Time: '212064.100000'
2025-11-22 23:26:43 (99879): Status Report: Elapsed Time: '60000.000000'
2025-11-22 23:26:43 (99879): Status Report: CPU Time: '235792.920000'
2025-11-22 23:58:55 (99879): Guest Log:  *** Job finished ***
2025-11-22 23:58:55 (99879): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:36,351 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:36,351 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:45,949 | INFO     | [monitor] cgroup control has ended
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:47,677 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139964666775360)>', '<ExcThread(monitor, started 139964218058496)>']
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:48,378 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:48,378 | INFO     | [monitor] control thread has ended
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:52,683 | INFO     | all workflow threads have been joined
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:52,684 | INFO     | end of generic workflow (traces error code: 0)
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:52,684 | INFO     | traces error code: 0
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:52,685 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:52,903 [wrapper] ==== pilot stdout END ====
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:52,916 [wrapper] ==== wrapper stdout RESUME ====
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:52,928 [wrapper] pilotpid: 5999
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:52,941 [wrapper] Pilot exit status: 0
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:52,981 [wrapper] pandaids: 6894247011
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:53,061 [wrapper] cleanup supervisor_pilot 17039 6000
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:53,074 [wrapper] Test setup, not cleaning
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:53,087 [wrapper] apfmon messages muted
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:53,100 [wrapper] ==== wrapper stdout END ====
2025-11-22 23:58:55 (99879): Guest Log: 2025-11-22 22:58:53,113 [wrapper] ==== wrapper stderr END ====
2025-11-22 23:58:55 (99879): Guest Log:  *** Error codes and diagnostics ***
2025-11-22 23:58:55 (99879): Guest Log:     "exeErrorCode": 0,
2025-11-22 23:58:55 (99879): Guest Log:     "exeErrorDiag": "",
2025-11-22 23:58:55 (99879): Guest Log:     "pilotErrorCode": 0,
2025-11-22 23:58:55 (99879): Guest Log:     "pilotErrorDiag": "",
2025-11-22 23:58:55 (99879): Guest Log:  *** Listing of results directory ***
2025-11-22 23:58:55 (99879): Guest Log: total 918236
2025-11-22 23:58:55 (99879): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 21 01:08 pilot3.tar.gz
2025-11-22 23:58:55 (99879): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 21 01:43 queuedata.json
2025-11-22 23:58:55 (99879): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 21 01:44 runpilot2-wrapper.sh
2025-11-22 23:58:55 (99879): Guest Log: -rw-r--r--. 1 atlas atlas      5962 Nov 22 05:57 init_data.xml
2025-11-22 23:58:55 (99879): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Nov 22 05:57 start_atlas.sh
2025-11-22 23:58:55 (99879): Guest Log: -rw-r--r--. 1 atlas atlas    590105 Nov 22 05:57 input.tar.gz
2025-11-22 23:58:55 (99879): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 22 05:57 EVNT.47493127._002096.pool.root.1 -> /data/./ATLAS.root_0
2025-11-22 23:58:55 (99879): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 22 05:57 pandaJob.out
2025-11-22 23:58:55 (99879): Guest Log: -rw-------. 1 atlas atlas    989752 Nov 22 05:58 agis_schedconf.cvmfs.json
2025-11-22 23:58:55 (99879): Guest Log: drwx------. 5 atlas atlas      4096 Nov 22 05:58 pilot3
2025-11-22 23:58:55 (99879): Guest Log: -rw-------. 1 atlas atlas 917866860 Nov 22 22:57 HITS.47533967._000676.pool.root.1
2025-11-22 23:58:55 (99879): Guest Log: -rw-------. 1 atlas atlas      1037 Nov 22 22:57 memory_monitor_summary.json
2025-11-22 23:58:55 (99879): Guest Log: -rw-------. 1 atlas atlas        95 Nov 22 22:57 pilot_heartbeat.json
2025-11-22 23:58:55 (99879): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 22 22:57 agis_ddmendpoints.agis.ALL.json
2025-11-22 23:58:55 (99879): Guest Log: -rw-------. 1 atlas atlas   1688265 Nov 22 22:57 log.47533967._000676.job.log.tgz.1
2025-11-22 23:58:55 (99879): Guest Log: -rw-------. 1 atlas atlas      8617 Nov 22 22:58 heartbeat.json
2025-11-22 23:58:55 (99879): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 22 22:58 pilotlog.txt
2025-11-22 23:58:55 (99879): Guest Log: -rw-------. 1 atlas atlas   7586383 Nov 22 22:58 log.47533967._000676.job.log.1
2025-11-22 23:58:55 (99879): Guest Log: -rw-------. 1 atlas atlas       353 Nov 22 22:58 output.list
2025-11-22 23:58:55 (99879): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 22 22:58 runtime_log
2025-11-22 23:58:55 (99879): Guest Log: -rw-------. 1 atlas atlas   9297920 Nov 22 22:58 result.tar.gz
2025-11-22 23:58:55 (99879): Guest Log: -rw-r--r--. 1 atlas atlas      8716 Nov 22 22:58 runtime_log.err
2025-11-22 23:58:55 (99879): Guest Log: -rw-------. 1 atlas atlas       655 Nov 22 22:58 JbxLDmSNVg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYpIKDmMpe3fm.diag
2025-11-22 23:58:55 (99879): Guest Log: Looking for outputfile HITS.47533967._000676.pool.root.1
2025-11-22 23:58:55 (99879): Guest Log: HITS file was successfully produced
2025-11-22 23:58:55 (99879): Guest Log: -rw-------. 1 atlas atlas 917866860 Nov 22 22:57 /home/atlas/RunAtlas/HITS.47533967._000676.pool.root.1
2025-11-22 23:58:56 (99879): Guest Log: Successfully finished the ATLAS job!
2025-11-22 23:58:56 (99879): Guest Log: Copying the results back to the shared directory!
2025-11-22 23:58:56 (99879): Guest Log:  *** Contents of shared directory: ***
2025-11-22 23:58:56 (99879): Guest Log: total 411292
2025-11-22 23:58:56 (99879): Guest Log: -rw-r--r--. 1 root root 411239304 Nov 22 05:56 ATLAS.root_0
2025-11-22 23:58:56 (99879): Guest Log: -rw-r--r--. 1 root root      5962 Nov 22 05:56 init_data.xml
2025-11-22 23:58:56 (99879): Guest Log: -rw-r--r--. 1 root root    590105 Nov 22 05:56 input.tar.gz
2025-11-22 23:58:56 (99879): Guest Log: -rw-r--r--. 1 root root   9297920 Nov 22 22:58 result.tar.gz
2025-11-22 23:58:56 (99879): Guest Log: -rw-r--r--. 1 root root     15847 Nov 22 05:56 start_atlas.sh
2025-11-22 23:58:56 (99879): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-22 23:58:56 (99879): VM Completion File Detected.
2025-11-22 23:58:56 (99879): Powering off VM.
2025-11-22 23:58:56 (99879): Successfully stopped VM.
2025-11-22 23:58:56 (99879): Deregistering VM. (boinc_5be7eed8c4be78c1, slot#0)
2025-11-22 23:58:56 (99879): Removing network bandwidth throttle group from VM.
2025-11-22 23:58:56 (99879): Removing VM from VirtualBox.
2025-11-22 23:59:01 (99879): called boinc_finish(0)

</stderr_txt>
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