Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:51:45 (16333): wrapper (7.7.26015): starting
08:51:45 (16333): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 08:51:45] Arguments: --nthreads 8
[2025-11-24 08:51:45] Threads: 8
[2025-11-24 08:51:45] Checking for CVMFS
[2025-11-24 08:51:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 08:51:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 08:51:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 08:51:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 08:51:45] 2.11.2.0 31392 282064 135048 153238 3 80 14764982 25165825 0 130560 12 139083372 99.876 78843768 2864 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 08:51:45] CVMFS is ok
[2025-11-24 08:51:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 08:51:45] Checking for apptainer binary...
[2025-11-24 08:51:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 08:51:45] Running /usr/bin/apptainer --version
[2025-11-24 08:51:46] apptainer version 1.3.2-1.el7
[2025-11-24 08:51:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 08:51:47] cg-vwn267.simple-grid.lan
[2025-11-24 08:51:47] apptainer works
[2025-11-24 08:51:47] Set ATHENA_PROC_NUMBER=8
[2025-11-24 08:51:47] Set ATHENA_CORE_NUMBER=8
[2025-11-24 08:51:47] Starting ATLAS job with PandaID=6894242388
[2025-11-24 08:51:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 05:43:24]  *** The last 200 lines of the pilot log: ***
[2025-11-25 05:43:24] 2025-11-25 04:42:03,405 | INFO     | time since job start (74999s) is within the limit (172800.0s)
[2025-11-25 05:43:24] 2025-11-25 04:42:03,759 | INFO     | monitor loop #4997: job 0:6894242388 is in state 'finished'
[2025-11-25 05:43:24] 2025-11-25 04:42:03,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:43:24] 2025-11-25 04:42:05,412 | INFO     | time since job start (75001s) is within the limit (172800.0s)
[2025-11-25 05:43:24] 2025-11-25 04:42:06,264 | INFO     | monitor loop #4998: job 0:6894242388 is in state 'finished'
[2025-11-25 05:43:24] 2025-11-25 04:42:06,264 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:43:24] 2025-11-25 04:42:07,423 | INFO     | time since job start (75003s) is within the limit (172800.0s)
[2025-11-25 05:43:24] 2025-11-25 04:42:08,769 | INFO     | monitor loop #4999: job 0:6894242388 is in state 'finished'
[2025-11-25 05:43:24] 2025-11-25 04:42:08,769 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:43:24] 2025-11-25 04:42:09,432 | INFO     | time since job start (75005s) is within the limit (172800.0s)
[2025-11-25 05:43:24] 2025-11-25 04:42:11,279 | INFO     | monitor loop #5000: job 0:6894242388 is in state 'finished'
[2025-11-25 05:43:24] 2025-11-25 04:42:11,279 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:43:24] 2025-11-25 04:42:11,442 | INFO     | time since job start (75007s) is within the limit (172800.0s)
[2025-11-25 05:43:24] 2025-11-25 04:42:13,192 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 05:43:24] 2025-11-25 04:42:13,193 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 05:43:24] 2025-11-25 04:42:13,195 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6894242388/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 05:43:24] 2025-11-25 04:42:13,196 | INFO     | extracted standard info from prmon json
[2025-11-25 05:43:24] 2025-11-25 04:42:13,196 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 05:43:24] 2025-11-25 04:42:13,196 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 05:43:24] 2025-11-25 04:42:13,241 | INFO     | fitting pss+swap vs Time
[2025-11-25 05:43:24] 2025-11-25 04:42:13,244 | INFO     | sum of square deviations: 574224211305.8851
[2025-11-25 05:43:24] 2025-11-25 04:42:13,314 | INFO     | sum of deviations: 958672800252.607
[2025-11-25 05:43:24] 2025-11-25 04:42:13,315 | INFO     | mean x: 1764008186.4698696
[2025-11-25 05:43:24] 2025-11-25 04:42:13,315 | INFO     | mean y: 2883276.9486970683
[2025-11-25 05:43:24] 2025-11-25 04:42:13,315 | INFO     | intersect: -2942145223.235445
[2025-11-25 05:43:24] 2025-11-25 04:42:13,317 | INFO     | chi2: 15.197848509466896
[2025-11-25 05:43:24] 2025-11-25 04:42:13,319 | INFO     | sum of square deviations: 567239085441.162
[2025-11-25 05:43:24] 2025-11-25 04:42:13,371 | INFO     | sum of deviations: 1369668979071.1567
[2025-11-25 05:43:24] 2025-11-25 04:42:13,372 | INFO     | mean x: 1764008033.9738348
[2025-11-25 05:43:24] 2025-11-25 04:42:13,372 | INFO     | mean y: 2892248.598528209
[2025-11-25 05:43:24] 2025-11-25 04:42:13,372 | INFO     | intersect: -4256523480.9913473
[2025-11-25 05:43:24] 2025-11-25 04:42:13,374 | INFO     | chi2: 11.977958317920312
[2025-11-25 05:43:24] 2025-11-25 04:42:13,374 | INFO     | current chi2=11.977958317920312 (change=21.186486952682028 %)
[2025-11-25 05:43:24] 2025-11-25 04:42:13,374 | INFO     | right removable region: 1222
[2025-11-25 05:43:24] 2025-11-25 04:42:13,376 | INFO     | sum of square deviations: 567238358931.1624
[2025-11-25 05:43:24] 2025-11-25 04:42:13,424 | INFO     | sum of deviations: 581933785926.4271
[2025-11-25 05:43:24] 2025-11-25 04:42:13,424 | INFO     | mean x: 1764008338.9738348
[2025-11-25 05:43:24] 2025-11-25 04:42:13,424 | INFO     | mean y: 2891496.6696647587
[2025-11-25 05:43:24] 2025-11-25 04:42:13,425 | INFO     | intersect: -1806816952.9477346
[2025-11-25 05:43:24] 2025-11-25 04:42:13,426 | INFO     | chi2: 12.732657068742128
[2025-11-25 05:43:24] 2025-11-25 04:42:13,427 | INFO     | current chi2=12.732657068742128 (change=16.220660702001172 %)
[2025-11-25 05:43:24] 2025-11-25 04:42:13,427 | INFO     | left removable region: 10
[2025-11-25 05:43:24] 2025-11-25 04:42:13,429 | INFO     | sum of square deviations: 552070485236.5214
[2025-11-25 05:43:24] 2025-11-25 04:42:13,460 | INFO     | time since job start (75009s) is within the limit (172800.0s)
[2025-11-25 05:43:24] 2025-11-25 04:42:13,486 | INFO     | sum of deviations: 1005959525851.596
[2025-11-25 05:43:24] 2025-11-25 04:42:13,487 | INFO     | mean x: 1764008308.480198
[2025-11-25 05:43:24] 2025-11-25 04:42:13,487 | INFO     | mean y: 2904281.358085809
[2025-11-25 05:43:24] 2025-11-25 04:42:13,487 | INFO     | intersect: -3211397169.3647594
[2025-11-25 05:43:24] 2025-11-25 04:42:13,489 | INFO     | chi2: 8.664835509866057
[2025-11-25 05:43:24] 2025-11-25 04:42:13,489 | INFO     | current memory leak: 1.82 B/s (using 1212 data points, chi2=8.66)
[2025-11-25 05:43:24] 2025-11-25 04:42:13,491 | INFO     | could have reported an average CPU frequency of 1999 MHz (42 samples)
[2025-11-25 05:43:24] 2025-11-25 04:42:13,491 | INFO     | ..............................
[2025-11-25 05:43:24] 2025-11-25 04:42:13,491 | INFO     | . Timing measurements:
[2025-11-25 05:43:24] 2025-11-25 04:42:13,491 | INFO     | . get job = 0 s
[2025-11-25 05:43:24] 2025-11-25 04:42:13,491 | INFO     | . initial setup = 2 s
[2025-11-25 05:43:24] 2025-11-25 04:42:13,492 | INFO     | . payload setup = 9 s
[2025-11-25 05:43:24] 2025-11-25 04:42:13,492 | INFO     | . stage-in = 0 s
[2025-11-25 05:43:24] 2025-11-25 04:42:13,492 | INFO     | . payload execution = 74879 s
[2025-11-25 05:43:24] 2025-11-25 04:42:13,492 | INFO     | . stage-out = 5 s
[2025-11-25 05:43:24] 2025-11-25 04:42:13,492 | INFO     | . log creation = 1 s
[2025-11-25 05:43:24] 2025-11-25 04:42:13,492 | INFO     | ..............................
[2025-11-25 05:43:24] 2025-11-25 04:42:13,632 | INFO     | 
[2025-11-25 05:43:24] 2025-11-25 04:42:13,632 | INFO     | job summary report
[2025-11-25 05:43:24] 2025-11-25 04:42:13,632 | INFO     | --------------------------------------------------
[2025-11-25 05:43:24] 2025-11-25 04:42:13,632 | INFO     | PanDA job id: 6894242388
[2025-11-25 05:43:24] 2025-11-25 04:42:13,632 | INFO     | task id: 47533967
[2025-11-25 05:43:24] 2025-11-25 04:42:13,632 | INFO     | errors: (none)
[2025-11-25 05:43:24] 2025-11-25 04:42:13,633 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 05:43:24] 2025-11-25 04:42:13,633 | INFO     | pilot state: finished 
[2025-11-25 05:43:24] 2025-11-25 04:42:13,633 | INFO     | transexitcode: 0
[2025-11-25 05:43:24] 2025-11-25 04:42:13,633 | INFO     | exeerrorcode: 0
[2025-11-25 05:43:24] 2025-11-25 04:42:13,633 | INFO     | exeerrordiag: 
[2025-11-25 05:43:24] 2025-11-25 04:42:13,633 | INFO     | exitcode: 0
[2025-11-25 05:43:24] 2025-11-25 04:42:13,633 | INFO     | exitmsg: OK
[2025-11-25 05:43:24] 2025-11-25 04:42:13,633 | INFO     | cpuconsumptiontime: 344010 s
[2025-11-25 05:43:24] 2025-11-25 04:42:13,634 | INFO     | nevents: 1000
[2025-11-25 05:43:24] 2025-11-25 04:42:13,634 | INFO     | neventsw: 0
[2025-11-25 05:43:24] 2025-11-25 04:42:13,634 | INFO     | pid: 26499
[2025-11-25 05:43:24] 2025-11-25 04:42:13,634 | INFO     | pgrp: 26499
[2025-11-25 05:43:24] 2025-11-25 04:42:13,634 | INFO     | corecount: 8
[2025-11-25 05:43:24] 2025-11-25 04:42:13,634 | INFO     | event service: False
[2025-11-25 05:43:24] 2025-11-25 04:42:13,634 | INFO     | sizes: {0: 2298633, 1: 2298832, 7: 2299094, 12: 2299122, 74893: 2355925, 74900: 2365710, 74903: 2365894, 74991: 2366140}
[2025-11-25 05:43:24] 2025-11-25 04:42:13,634 | INFO     | --------------------------------------------------
[2025-11-25 05:43:24] 2025-11-25 04:42:13,635 | INFO     | 
[2025-11-25 05:43:24] 2025-11-25 04:42:13,635 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-25 05:43:24] 2025-11-25 04:42:14,077 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,077 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,078 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,078 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,078 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,078 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,078 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,078 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,079 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,079 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,079 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,079 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,079 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,079 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,079 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,080 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 05:43:24] 2025-11-25 04:42:14,080 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,080 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 05:43:24] 2025-11-25 04:42:14,080 | INFO     | job 6894242388 has completed (purged errors)
[2025-11-25 05:43:24] 2025-11-25 04:42:14,080 | INFO     | overall cleanup function is called
[2025-11-25 05:43:24] 2025-11-25 04:42:14,651 | INFO     | PID=20048 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 05:43:24] 2025-11-25 04:42:14,651 | INFO     | .. there are 9 such processes running
[2025-11-25 05:43:24] 2025-11-25 04:42:15,099 | INFO     | --- collectZombieJob: --- 10, [26499]
[2025-11-25 05:43:24] 2025-11-25 04:42:15,099 | INFO     | zombie collector waiting for pid 26499
[2025-11-25 05:43:24] 2025-11-25 04:42:15,099 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 05:43:24] 2025-11-25 04:42:15,099 | INFO     | collected zombie processes
[2025-11-25 05:43:24] 2025-11-25 04:42:15,100 | INFO     | will attempt to kill all subprocesses of pid=26499
[2025-11-25 05:43:24] 2025-11-25 04:42:15,246 | INFO     | process IDs to be killed: [26499] (in reverse order)
[2025-11-25 05:43:24] 2025-11-25 04:42:16,024 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 05:43:24] 2025-11-25 04:42:16,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 05:43:24] 2025-11-25 04:42:16,028 | INFO     | did not find any defunct processes belonging to 26499
[2025-11-25 05:43:24] 2025-11-25 04:42:16,031 | INFO     | did not find any defunct processes belonging to 26499
[2025-11-25 05:43:24] 2025-11-25 04:42:16,072 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 05:43:24] 2025-11-25 04:42:16,072 | INFO     | ready for new job
[2025-11-25 05:43:24] 2025-11-25 04:42:16,073 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 05:43:24] 2025-11-25 04:42:16,078 | INFO     | ***************************************
[2025-11-25 05:43:24] 2025-11-25 04:42:16,078 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 05:43:24] 2025-11-25 04:42:16,078 | INFO     | ***************************************
[2025-11-25 05:43:24] 2025-11-25 04:42:16,078 | INFO     | 
[2025-11-25 05:43:24] 2025-11-25 04:42:16,079 | INFO     | pilot is running in a VM
[2025-11-25 05:43:24] 2025-11-25 04:42:16,079 | INFO     | architecture information:
[2025-11-25 05:43:24] 2025-11-25 04:42:16,091 | INFO     | executing command: cat /etc/os-release
[2025-11-25 05:43:24] 2025-11-25 04:42:16,356 | INFO     | cat /etc/os-release:
[2025-11-25 05:43:24] NAME="CentOS Linux"
[2025-11-25 05:43:24] VERSION="7 (Core)"
[2025-11-25 05:43:24] ID="centos"
[2025-11-25 05:43:24] ID_LIKE="rhel fedora"
[2025-11-25 05:43:24] VERSION_ID="7"
[2025-11-25 05:43:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 05:43:24] ANSI_COLOR="0;31"
[2025-11-25 05:43:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 05:43:24] HOME_URL="https://www.centos.org/"
[2025-11-25 05:43:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 05:43:24] 
[2025-11-25 05:43:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 05:43:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 05:43:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 05:43:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 05:43:24] 
[2025-11-25 05:43:24] 2025-11-25 04:42:16,357 | INFO     | ***************************************
[2025-11-25 05:43:24] 2025-11-25 04:42:16,860 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-25 05:43:24] 2025-11-25 04:42:17,052 | INFO     | sufficient remaining disk space (495277047808 B)
[2025-11-25 05:43:24] 2025-11-25 04:42:17,052 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 05:43:24] 2025-11-25 04:42:17,052 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 05:43:24] 2025-11-25 04:42:17,052 | INFO     | update_server=False
[2025-11-25 05:43:24] 2025-11-25 04:42:17,052 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 05:43:24] 2025-11-25 04:42:17,053 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 05:43:24] 2025-11-25 04:42:17,303 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:43:24] 2025-11-25 04:42:17,303 | INFO     | aborting loop
[2025-11-25 05:43:24] 2025-11-25 04:42:17,393 | INFO     | all payload control threads have been joined
[2025-11-25 05:43:24] 2025-11-25 04:42:17,458 | INFO     | all data control threads have been joined
[2025-11-25 05:43:24] 2025-11-25 04:42:17,597 | INFO     | all job control threads have been joined
[2025-11-25 05:43:24] 2025-11-25 04:42:17,795 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 05:43:24] 2025-11-25 04:42:18,058 | INFO     | [job] retrieve thread has finished
[2025-11-25 05:43:24] 2025-11-25 04:42:18,274 | INFO     | [payload] validate_post thread has finished
[2025-11-25 05:43:24] 2025-11-25 04:42:18,309 | INFO     | [job] validate thread has finished
[2025-11-25 05:43:24] 2025-11-25 04:42:18,310 | INFO     | [job] job monitor thread has finished
[2025-11-25 05:43:24] 2025-11-25 04:42:18,399 | INFO     | [payload] control thread has finished
[2025-11-25 05:43:24] 2025-11-25 04:42:18,463 | INFO     | [data] control thread has finished
[2025-11-25 05:43:24] 2025-11-25 04:42:18,603 | INFO     | [job] control thread has finished
[2025-11-25 05:43:24] 2025-11-25 04:42:18,661 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:43:24] 2025-11-25 04:42:18,770 | INFO     | [payload] failed_post thread has finished
[2025-11-25 05:43:24] 2025-11-25 04:42:18,926 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 05:43:24] 2025-11-25 04:42:19,060 | INFO     | [data] copytool_out thread has finished
[2025-11-25 05:43:24] 2025-11-25 04:42:19,093 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 05:43:24] 2025-11-25 04:42:19,250 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 05:43:24] 2025-11-25 04:42:19,251 | INFO     | [data] copytool_in thread has finished
[2025-11-25 05:43:24] 2025-11-25 04:42:19,418 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 05:43:24] 2025-11-25 04:42:19,667 | INFO     | [job] queue monitor thread has finished
[2025-11-25 05:43:24] 2025-11-25 04:42:21,804 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 05:43:24] 2025-11-25 04:42:46,811 | INFO     | PID=20048 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 05:43:24] 2025-11-25 04:42:46,811 | INFO     | .. there are 9 such processes running
[2025-11-25 05:43:24] 2025-11-25 04:42:46,811 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 05:43:24] 2025-11-25 04:42:46,811 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 05:43:24] 2025-11-25 04:42:46,811 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 05:43:24] 2025-11-25 04:43:14,634 | INFO     | [monitor] cgroup control has ended
[2025-11-25 05:43:24] 2025-11-25 04:43:15,029 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140042779244352)>', '<ExcThread(monitor, started 140042349561600)>']
[2025-11-25 05:43:24] 2025-11-25 04:43:15,982 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 05:43:24] 2025-11-25 04:43:15,982 | INFO     | [monitor] control thread has ended
[2025-11-25 05:43:24] 2025-11-25 04:43:20,055 | INFO     | all workflow threads have been joined
[2025-11-25 05:43:24] 2025-11-25 04:43:20,055 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 05:43:24] 2025-11-25 04:43:20,056 | INFO     | traces error code: 0
[2025-11-25 05:43:24] 2025-11-25 04:43:20,056 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 05:43:24] 2025-11-25 04:43:20,328 [wrapper] ==== pilot stdout END ====
[2025-11-25 05:43:24] 2025-11-25 04:43:20,352 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 05:43:24] 2025-11-25 04:43:20,414 [wrapper] pilotpid: 20048
[2025-11-25 05:43:24] 2025-11-25 04:43:20,477 [wrapper] Pilot exit status: 0
[2025-11-25 05:43:24] 2025-11-25 04:43:20,932 [wrapper] pandaids: 6894242388
[2025-11-25 05:43:24] 2025-11-25 04:43:21,612 [wrapper] cleanup supervisor_pilot 12427 20049
[2025-11-25 05:43:24] 2025-11-25 04:43:21,661 [wrapper] Test setup, not cleaning
[2025-11-25 05:43:24] 2025-11-25 04:43:21,772 [wrapper] apfmon messages muted
[2025-11-25 05:43:24] 2025-11-25 04:43:21,877 [wrapper] ==== wrapper stdout END ====
[2025-11-25 05:43:24] 2025-11-25 04:43:21,973 [wrapper] ==== wrapper stderr END ====
[2025-11-25 05:43:24]  *** Error codes and diagnostics ***
[2025-11-25 05:43:24]     "exeErrorCode": 0,
[2025-11-25 05:43:24]     "exeErrorDiag": "",
[2025-11-25 05:43:24]     "pilotErrorCode": 0,
[2025-11-25 05:43:24]     "pilotErrorDiag": "",
[2025-11-25 05:43:24]  *** Listing of results directory ***
[2025-11-25 05:43:24] total 1331556
[2025-11-25 05:43:24] -rw-r--r--. 1 boinc boinc    576529 Nov 21 01:06 pilot3.tar.gz
[2025-11-25 05:43:24] -rw-r--r--. 1 boinc boinc      5112 Nov 21 01:49 queuedata.json
[2025-11-25 05:43:24] -rwx------. 1 boinc boinc     36292 Nov 21 01:52 runpilot2-wrapper.sh
[2025-11-25 05:43:24] -rw-r--r--. 1 boinc boinc       100 Nov 24 08:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 05:43:24] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 08:51 run_atlas
[2025-11-25 05:43:24] -rw-r--r--. 1 boinc boinc       105 Nov 24 08:51 job.xml
[2025-11-25 05:43:24] -rw-r--r--. 2 boinc boinc 407746400 Nov 24 08:51 EVNT.47493127._002065.pool.root.1
[2025-11-25 05:43:24] drwxrwx--x. 2 boinc boinc        68 Nov 24 08:51 shared
[2025-11-25 05:43:24] -rw-r--r--. 2 boinc boinc    590104 Nov 24 08:51 input.tar.gz
[2025-11-25 05:43:24] -rw-r--r--. 1 boinc boinc      6391 Nov 24 08:51 init_data.xml
[2025-11-25 05:43:24] -rw-r--r--. 2 boinc boinc     15847 Nov 24 08:51 start_atlas.sh
[2025-11-25 05:43:24] -rw-r--r--. 1 boinc boinc         0 Nov 24 08:51 boinc_lockfile
[2025-11-25 05:43:24] -rw-r--r--. 1 boinc boinc      2784 Nov 24 08:51 pandaJob.out
[2025-11-25 05:43:24] -rw-------. 1 boinc boinc    989786 Nov 24 08:52 agis_schedconf.cvmfs.json
[2025-11-25 05:43:24] drwx------. 5 boinc boinc      4096 Nov 24 08:52 pilot3
[2025-11-25 05:43:24] -rw-r--r--. 1 boinc boinc       533 Nov 25 05:17 boinc_task_state.xml
[2025-11-25 05:43:24] -rw-------. 1 boinc boinc 927222876 Nov 25 05:39 HITS.47533967._000368.pool.root.1
[2025-11-25 05:43:24] -rw-------. 1 boinc boinc      1035 Nov 25 05:40 memory_monitor_summary.json
[2025-11-25 05:43:24] -rw-------. 1 boinc boinc   1516227 Nov 25 05:40 agis_ddmendpoints.agis.ALL.json
[2025-11-25 05:43:24] -rw-------. 1 boinc boinc   2335360 Nov 25 05:40 log.47533967._000368.job.log.tgz.1
[2025-11-25 05:43:24] -rw-------. 1 boinc boinc        95 Nov 25 05:41 pilot_heartbeat.json
[2025-11-25 05:43:24] -rw-------. 1 boinc boinc      8625 Nov 25 05:42 heartbeat.json
[2025-11-25 05:43:24] -rw-------. 1 boinc boinc      4884 Nov 25 05:43 pilotlog.txt
[2025-11-25 05:43:24] -rw-------. 1 boinc boinc   9987295 Nov 25 05:43 log.47533967._000368.job.log.1
[2025-11-25 05:43:24] -rw-------. 1 boinc boinc       353 Nov 25 05:43 output.list
[2025-11-25 05:43:24] -rw-r--r--. 1 boinc boinc      8192 Nov 25 05:43 boinc_mmap_file
[2025-11-25 05:43:24] -rw-r--r--. 1 boinc boinc        29 Nov 25 05:43 wrapper_checkpoint.txt
[2025-11-25 05:43:24] -rw-r--r--. 1 boinc boinc       620 Nov 25 05:43 runtime_log
[2025-11-25 05:43:24] -rw-------. 1 boinc boinc  12339200 Nov 25 05:43 result.tar.gz
[2025-11-25 05:43:24] -rw-r--r--. 1 boinc boinc      8817 Nov 25 05:43 runtime_log.err
[2025-11-25 05:43:24] -rw-------. 1 boinc boinc       661 Nov 25 05:43 Q0TKDm8YUg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhlIKDmVYAyzn.diag
[2025-11-25 05:43:24] -rw-r--r--. 1 boinc boinc     21457 Nov 25 05:43 stderr.txt
[2025-11-25 05:43:24] HITS file was successfully produced:
[2025-11-25 05:43:24] -rw-------. 1 boinc boinc 927222876 Nov 25 05:39 shared/HITS.pool.root.1
[2025-11-25 05:43:24]  *** Contents of shared directory: ***
[2025-11-25 05:43:24] total 1316332
[2025-11-25 05:43:24] -rw-r--r--. 2 boinc boinc 407746400 Nov 24 08:51 ATLAS.root_0
[2025-11-25 05:43:24] -rw-r--r--. 2 boinc boinc    590104 Nov 24 08:51 input.tar.gz
[2025-11-25 05:43:24] -rw-r--r--. 2 boinc boinc     15847 Nov 24 08:51 start_atlas.sh
[2025-11-25 05:43:24] -rw-------. 1 boinc boinc 927222876 Nov 25 05:39 HITS.pool.root.1
[2025-11-25 05:43:24] -rw-------. 1 boinc boinc  12339200 Nov 25 05:43 result.tar.gz
05:43:26 (16333): run_atlas exited; CPU time 344406.395165
05:43:26 (16333): called boinc_finish(0)

</stderr_txt>
]]>

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