Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:11:06 (5684): wrapper (7.7.26015): starting
06:11:06 (5684): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 06:11:06] Arguments: --nthreads 8
[2025-11-21 06:11:06] Threads: 8
[2025-11-21 06:11:06] Checking for CVMFS
[2025-11-21 06:11:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 06:11:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 06:11:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 06:11:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 06:11:06] 2.11.2.0 2840 60358 78888 153122 4 1 18717702 20275201 1 130560 0 15193173 99.828 3809097 32388 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 06:11:06] CVMFS is ok
[2025-11-21 06:11:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 06:11:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 06:11:06] Further information can be found at the LHC@home message board.
[2025-11-21 06:11:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 06:11:06] Checking for apptainer binary...
[2025-11-21 06:11:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 06:11:06] Running /usr/bin/apptainer --version
[2025-11-21 06:11:06] apptainer version 1.3.2-1.el7
[2025-11-21 06:11:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 06:11:08] c-204-39.aglt2.org
[2025-11-21 06:11:08] apptainer works
[2025-11-21 06:11:08] Set ATHENA_PROC_NUMBER=8
[2025-11-21 06:11:08] Set ATHENA_CORE_NUMBER=8
[2025-11-21 06:11:08] Starting ATLAS job with PandaID=6893887190
[2025-11-21 06:11:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:10:56 (8712): wrapper (7.7.26015): starting
17:10:56 (8712): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 17:10:56] Arguments: --nthreads 8
[2025-11-21 17:10:56] Threads: 8
[2025-11-21 17:10:56] This job has been restarted, cleaning up previous attempt
[2025-11-21 17:10:56] Checking for CVMFS
[2025-11-21 17:10:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 17:10:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 17:10:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 17:10:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 17:10:57] 2.11.2.0 2840 61017 81904 153145 1 56 19528533 20275200 1 130560 0 15407533 99.830 3832681 32419 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 17:10:57] CVMFS is ok
[2025-11-21 17:10:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 17:10:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 17:10:57] Further information can be found at the LHC@home message board.
[2025-11-21 17:10:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 17:10:57] Checking for apptainer binary...
[2025-11-21 17:10:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 17:10:57] Running /usr/bin/apptainer --version
[2025-11-21 17:10:57] apptainer version 1.3.2-1.el7
[2025-11-21 17:10:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 17:10:59] c-204-39.aglt2.org
[2025-11-21 17:10:59] apptainer works
[2025-11-21 17:10:59] Set ATHENA_PROC_NUMBER=8
[2025-11-21 17:10:59] Set ATHENA_CORE_NUMBER=8
[2025-11-21 17:10:59] Starting ATLAS job with PandaID=6893887190
[2025-11-21 17:10:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 05:58:50]  *** The last 200 lines of the pilot log: ***
[2025-11-22 05:58:50] 2025-11-22 10:58:15,260 | INFO     | time since job start (46018s) is within the limit (172800.0s)
[2025-11-22 05:58:50] 2025-11-22 10:58:15,313 | INFO     | monitor loop #3389: job 0:6893887190 is in state 'finished'
[2025-11-22 05:58:50] 2025-11-22 10:58:15,313 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 05:58:50] 2025-11-22 10:58:17,266 | INFO     | time since job start (46020s) is within the limit (172800.0s)
[2025-11-22 05:58:50] 2025-11-22 10:58:17,416 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 05:58:50] 2025-11-22 10:58:17,422 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-11-22 05:58:50] 2025-11-22 10:58:17,426 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893887190/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 05:58:50] 2025-11-22 10:58:17,427 | INFO     | extracted standard info from prmon json
[2025-11-22 05:58:50] 2025-11-22 10:58:17,427 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 05:58:50] 2025-11-22 10:58:17,427 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 05:58:50] 2025-11-22 10:58:17,441 | INFO     | fitting pss+swap vs Time
[2025-11-22 05:58:50] 2025-11-22 10:58:17,441 | INFO     | sum of square deviations: 132920688515.10338
[2025-11-22 05:58:50] 2025-11-22 10:58:17,453 | INFO     | sum of deviations: 920475352990.4828
[2025-11-22 05:58:50] 2025-11-22 10:58:17,453 | INFO     | mean x: 1763786076.0344827
[2025-11-22 05:58:50] 2025-11-22 10:58:17,454 | INFO     | mean y: 2887960.7122015916
[2025-11-22 05:58:50] 2025-11-22 10:58:17,454 | INFO     | intersect: -12211325109.3101
[2025-11-22 05:58:50] 2025-11-22 10:58:17,455 | INFO     | chi2: 5.0022583728430225
[2025-11-22 05:58:50] 2025-11-22 10:58:17,455 | INFO     | sum of square deviations: 130293999386.16537
[2025-11-22 05:58:50] 2025-11-22 10:58:17,467 | INFO     | sum of deviations: 1141498249599.614
[2025-11-22 05:58:50] 2025-11-22 10:58:17,467 | INFO     | mean x: 1763785923.5380507
[2025-11-22 05:58:50] 2025-11-22 10:58:17,467 | INFO     | mean y: 2900786.9959946596
[2025-11-22 05:58:50] 2025-11-22 10:58:17,467 | INFO     | intersect: -15449526445.818707
[2025-11-22 05:58:50] 2025-11-22 10:58:17,468 | INFO     | chi2: 2.53610873603134
[2025-11-22 05:58:50] 2025-11-22 10:58:17,468 | INFO     | current chi2=2.53610873603134 (change=49.30072485260396 %)
[2025-11-22 05:58:50] 2025-11-22 10:58:17,469 | INFO     | sum of square deviations: 127702148119.70818
[2025-11-22 05:58:50] 2025-11-22 10:58:17,480 | INFO     | sum of deviations: 1192363561589.165
[2025-11-22 05:58:50] 2025-11-22 10:58:17,480 | INFO     | mean x: 1763785771.0416667
[2025-11-22 05:58:50] 2025-11-22 10:58:17,481 | INFO     | mean y: 2903774.5430107526
[2025-11-22 05:58:50] 2025-11-22 10:58:17,481 | INFO     | intersect: -16465682813.899567
[2025-11-22 05:58:50] 2025-11-22 10:58:17,481 | INFO     | chi2: 2.2987067297955526
[2025-11-22 05:58:50] 2025-11-22 10:58:17,482 | INFO     | current chi2=2.2987067297955526 (change=9.360876482263482 %)
[2025-11-22 05:58:50] 2025-11-22 10:58:17,482 | INFO     | right removable region: 743
[2025-11-22 05:58:50] 2025-11-22 10:58:17,483 | INFO     | sum of square deviations: 130293753556.16542
[2025-11-22 05:58:50] 2025-11-22 10:58:17,494 | INFO     | sum of deviations: 717411323205.682
[2025-11-22 05:58:50] 2025-11-22 10:58:17,494 | INFO     | mean x: 1763786228.5380507
[2025-11-22 05:58:50] 2025-11-22 10:58:17,494 | INFO     | mean y: 2899730.4672897197
[2025-11-22 05:58:50] 2025-11-22 10:58:17,494 | INFO     | intersect: -9708695626.419765
[2025-11-22 05:58:50] 2025-11-22 10:58:17,495 | INFO     | chi2: 2.8649818009684127
[2025-11-22 05:58:50] 2025-11-22 10:58:17,495 | INFO     | current chi2=2.8649818009684127 (change=42.72623308459561 %)
[2025-11-22 05:58:50] 2025-11-22 10:58:17,496 | INFO     | sum of square deviations: 127701839094.01997
[2025-11-22 05:58:50] 2025-11-22 10:58:17,507 | INFO     | sum of deviations: 673762835729.8391
[2025-11-22 05:58:50] 2025-11-22 10:58:17,507 | INFO     | mean x: 1763786381.0362904
[2025-11-22 05:58:50] 2025-11-22 10:58:17,507 | INFO     | mean y: 2902297.376344086
[2025-11-22 05:58:50] 2025-11-22 10:58:17,508 | INFO     | intersect: -9302944213.054459
[2025-11-22 05:58:50] 2025-11-22 10:58:17,508 | INFO     | chi2: 2.8264856186679808
[2025-11-22 05:58:50] 2025-11-22 10:58:17,508 | INFO     | current chi2=2.8264856186679808 (change=1.3436798197956992 %)
[2025-11-22 05:58:50] 2025-11-22 10:58:17,509 | INFO     | left removable region: 20
[2025-11-22 05:58:50] 2025-11-22 10:58:17,509 | INFO     | sum of square deviations: 117190887669.10365
[2025-11-22 05:58:50] 2025-11-22 10:58:17,520 | INFO     | sum of deviations: 898527180881.6312
[2025-11-22 05:58:50] 2025-11-22 10:58:17,521 | INFO     | mean x: 1763786350.5477178
[2025-11-22 05:58:50] 2025-11-22 10:58:17,521 | INFO     | mean y: 2921572.836791148
[2025-11-22 05:58:50] 2025-11-22 10:58:17,521 | INFO     | intersect: -13520399299.260014
[2025-11-22 05:58:50] 2025-11-22 10:58:17,522 | INFO     | chi2: 0.10004297591152768
[2025-11-22 05:58:50] 2025-11-22 10:58:17,522 | INFO     | current memory leak: 7.67 B/s (using 723 data points, chi2=0.10)
[2025-11-22 05:58:50] 2025-11-22 10:58:17,522 | INFO     | could have reported an average CPU frequency of 2147 MHz (29 samples)
[2025-11-22 05:58:50] 2025-11-22 10:58:17,523 | INFO     | ..............................
[2025-11-22 05:58:50] 2025-11-22 10:58:17,523 | INFO     | . Timing measurements:
[2025-11-22 05:58:50] 2025-11-22 10:58:17,523 | INFO     | . get job = 0 s
[2025-11-22 05:58:50] 2025-11-22 10:58:17,523 | INFO     | . initial setup = 2 s
[2025-11-22 05:58:50] 2025-11-22 10:58:17,523 | INFO     | . payload setup = 9 s
[2025-11-22 05:58:50] 2025-11-22 10:58:17,523 | INFO     | . stage-in = 0 s
[2025-11-22 05:58:50] 2025-11-22 10:58:17,523 | INFO     | . payload execution = 45977 s
[2025-11-22 05:58:50] 2025-11-22 10:58:17,523 | INFO     | . stage-out = 4 s
[2025-11-22 05:58:50] 2025-11-22 10:58:17,523 | INFO     | . log creation = 0 s
[2025-11-22 05:58:50] 2025-11-22 10:58:17,524 | INFO     | ..............................
[2025-11-22 05:58:50] 2025-11-22 10:58:17,615 | INFO     | 
[2025-11-22 05:58:50] 2025-11-22 10:58:17,616 | INFO     | job summary report
[2025-11-22 05:58:50] 2025-11-22 10:58:17,616 | INFO     | --------------------------------------------------
[2025-11-22 05:58:50] 2025-11-22 10:58:17,616 | INFO     | PanDA job id: 6893887190
[2025-11-22 05:58:50] 2025-11-22 10:58:17,616 | INFO     | task id: 47523449
[2025-11-22 05:58:50] 2025-11-22 10:58:17,616 | INFO     | errors: (none)
[2025-11-22 05:58:50] 2025-11-22 10:58:17,617 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 05:58:50] 2025-11-22 10:58:17,617 | INFO     | pilot state: finished 
[2025-11-22 05:58:50] 2025-11-22 10:58:17,617 | INFO     | transexitcode: 0
[2025-11-22 05:58:50] 2025-11-22 10:58:17,617 | INFO     | exeerrorcode: 0
[2025-11-22 05:58:50] 2025-11-22 10:58:17,617 | INFO     | exeerrordiag: 
[2025-11-22 05:58:50] 2025-11-22 10:58:17,617 | INFO     | exitcode: 0
[2025-11-22 05:58:50] 2025-11-22 10:58:17,618 | INFO     | exitmsg: OK
[2025-11-22 05:58:50] 2025-11-22 10:58:17,618 | INFO     | cpuconsumptiontime: 356602 s
[2025-11-22 05:58:50] 2025-11-22 10:58:17,618 | INFO     | nevents: 1000
[2025-11-22 05:58:50] 2025-11-22 10:58:17,618 | INFO     | neventsw: 0
[2025-11-22 05:58:50] 2025-11-22 10:58:17,618 | INFO     | pid: 18912
[2025-11-22 05:58:50] 2025-11-22 10:58:17,618 | INFO     | pgrp: 18912
[2025-11-22 05:58:50] 2025-11-22 10:58:17,619 | INFO     | corecount: 8
[2025-11-22 05:58:50] 2025-11-22 10:58:17,619 | INFO     | event service: False
[2025-11-22 05:58:50] 2025-11-22 10:58:17,619 | INFO     | sizes: {0: 2298580, 1: 2298835, 7: 2299097, 12: 2299125, 45990: 2345440, 45991: 2345439, 45996: 2354645, 45997: 2354701, 46004: 2354947}
[2025-11-22 05:58:50] 2025-11-22 10:58:17,619 | INFO     | --------------------------------------------------
[2025-11-22 05:58:50] 2025-11-22 10:58:17,619 | INFO     | 
[2025-11-22 05:58:50] 2025-11-22 10:58:17,620 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 05:58:50] 2025-11-22 10:58:17,649 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,650 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,650 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,650 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,650 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,650 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,651 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,651 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,651 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,651 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,651 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,652 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,652 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,652 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,652 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,652 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,652 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,653 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 05:58:50] 2025-11-22 10:58:17,653 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,653 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 05:58:50] 2025-11-22 10:58:17,653 | INFO     | job 6893887190 has completed (purged errors)
[2025-11-22 05:58:50] 2025-11-22 10:58:17,654 | INFO     | overall cleanup function is called
[2025-11-22 05:58:50] 2025-11-22 10:58:18,668 | INFO     | --- collectZombieJob: --- 10, [18912]
[2025-11-22 05:58:50] 2025-11-22 10:58:18,669 | INFO     | zombie collector waiting for pid 18912
[2025-11-22 05:58:50] 2025-11-22 10:58:18,669 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 05:58:50] 2025-11-22 10:58:18,669 | INFO     | collected zombie processes
[2025-11-22 05:58:50] 2025-11-22 10:58:18,669 | INFO     | will attempt to kill all subprocesses of pid=18912
[2025-11-22 05:58:50] 2025-11-22 10:58:18,760 | INFO     | process IDs to be killed: [18912] (in reverse order)
[2025-11-22 05:58:50] 2025-11-22 10:58:18,819 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 05:58:50] 2025-11-22 10:58:18,820 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 05:58:50] 2025-11-22 10:58:18,824 | INFO     | did not find any defunct processes belonging to 18912
[2025-11-22 05:58:50] 2025-11-22 10:58:18,828 | INFO     | did not find any defunct processes belonging to 18912
[2025-11-22 05:58:50] 2025-11-22 10:58:18,830 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 05:58:50] 2025-11-22 10:58:18,830 | INFO     | ready for new job
[2025-11-22 05:58:50] 2025-11-22 10:58:18,831 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 05:58:50] 2025-11-22 10:58:18,835 | INFO     | ***************************************
[2025-11-22 05:58:50] 2025-11-22 10:58:18,835 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 05:58:50] 2025-11-22 10:58:18,835 | INFO     | ***************************************
[2025-11-22 05:58:50] 2025-11-22 10:58:18,835 | INFO     | 
[2025-11-22 05:58:50] 2025-11-22 10:58:18,836 | INFO     | architecture information:
[2025-11-22 05:58:50] 2025-11-22 10:58:18,837 | INFO     | executing command: cat /etc/os-release
[2025-11-22 05:58:50] 2025-11-22 10:58:18,854 | INFO     | cat /etc/os-release:
[2025-11-22 05:58:50] NAME="CentOS Linux"
[2025-11-22 05:58:50] VERSION="7 (Core)"
[2025-11-22 05:58:50] ID="centos"
[2025-11-22 05:58:50] ID_LIKE="rhel fedora"
[2025-11-22 05:58:50] VERSION_ID="7"
[2025-11-22 05:58:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 05:58:50] ANSI_COLOR="0;31"
[2025-11-22 05:58:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 05:58:50] HOME_URL="https://www.centos.org/"
[2025-11-22 05:58:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 05:58:50] 
[2025-11-22 05:58:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 05:58:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 05:58:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 05:58:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 05:58:50] 
[2025-11-22 05:58:50] 2025-11-22 10:58:18,855 | INFO     | ***************************************
[2025-11-22 05:58:50] 2025-11-22 10:58:19,357 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 05:58:50] 2025-11-22 10:58:19,377 | INFO     | sufficient remaining disk space (17013145600 B)
[2025-11-22 05:58:50] 2025-11-22 10:58:19,377 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 05:58:50] 2025-11-22 10:58:19,378 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 05:58:50] 2025-11-22 10:58:19,378 | INFO     | update_server=False
[2025-11-22 05:58:50] 2025-11-22 10:58:19,378 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 05:58:50] 2025-11-22 10:58:19,379 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:58:50] 2025-11-22 10:58:19,379 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:58:50] 2025-11-22 10:58:19,379 | INFO     | aborting loop
[2025-11-22 05:58:50] 2025-11-22 10:58:19,563 | INFO     | all data control threads have been joined
[2025-11-22 05:58:50] 2025-11-22 10:58:19,876 | INFO     | all job control threads have been joined
[2025-11-22 05:58:50] 2025-11-22 10:58:20,055 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 05:58:50] 2025-11-22 10:58:20,383 | INFO     | [job] retrieve thread has finished
[2025-11-22 05:58:50] 2025-11-22 10:58:20,384 | INFO     | [job] job monitor thread has finished
[2025-11-22 05:58:50] 2025-11-22 10:58:20,385 | INFO     | [job] queue monitor thread has finished
[2025-11-22 05:58:50] 2025-11-22 10:58:20,411 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 05:58:50] 2025-11-22 10:58:20,488 | INFO     | [job] validate thread has finished
[2025-11-22 05:58:50] 2025-11-22 10:58:20,568 | INFO     | [data] control thread has finished
[2025-11-22 05:58:50] 2025-11-22 10:58:20,698 | INFO     | all payload control threads have been joined
[2025-11-22 05:58:50] 2025-11-22 10:58:20,882 | INFO     | [job] control thread has finished
[2025-11-22 05:58:50] 2025-11-22 10:58:20,922 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 05:58:50] 2025-11-22 10:58:20,954 | INFO     | [payload] failed_post thread has finished
[2025-11-22 05:58:50] 2025-11-22 10:58:20,955 | INFO     | [data] copytool_in thread has finished
[2025-11-22 05:58:50] 2025-11-22 10:58:21,133 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 05:58:50] 2025-11-22 10:58:21,484 | INFO     | [payload] validate_post thread has finished
[2025-11-22 05:58:50] 2025-11-22 10:58:21,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 05:58:50] 2025-11-22 10:58:21,527 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 05:58:50] 2025-11-22 10:58:21,700 | INFO     | [payload] control thread has finished
[2025-11-22 05:58:50] 2025-11-22 10:58:22,061 | INFO     | [data] copytool_out thread has finished
[2025-11-22 05:58:50] 2025-11-22 10:58:25,530 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 05:58:50] 2025-11-22 10:58:33,140 | INFO     | [monitor] cgroup control has ended
[2025-11-22 05:58:50] 2025-11-22 10:58:33,926 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139768759580480)>', '<ExcThread(monitor, started 139768025310976)>']
[2025-11-22 05:58:50] 2025-11-22 10:58:38,952 | INFO     | all workflow threads have been joined
[2025-11-22 05:58:50] 2025-11-22 10:58:38,952 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 05:58:50] 2025-11-22 10:58:38,953 | INFO     | traces error code: 0
[2025-11-22 05:58:50] 2025-11-22 10:58:38,953 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 05:58:50] 2025-11-22 10:58:50,480 | INFO     | PID=12454 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 05:58:50] 2025-11-22 10:58:50,481 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 05:58:50] 2025-11-22 10:58:50,481 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 05:58:50] 2025-11-22 10:58:50,481 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 05:58:50] 2025-11-22 10:58:50,481 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 05:58:50] 2025-11-22 10:58:50,481 | INFO     | [monitor] control thread has ended
[2025-11-22 05:58:50] 2025-11-22 10:58:50,589 [wrapper] ==== pilot stdout END ====
[2025-11-22 05:58:50] 2025-11-22 10:58:50,594 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 05:58:50] 2025-11-22 10:58:50,599 [wrapper] pilotpid: 12454
[2025-11-22 05:58:50] 2025-11-22 10:58:50,603 [wrapper] Pilot exit status: 0
[2025-11-22 05:58:50] 2025-11-22 10:58:50,622 [wrapper] pandaids: 6893887190 6893887190
[2025-11-22 05:58:50] 2025-11-22 10:58:50,671 [wrapper] cleanup supervisor_pilot 32265 12455
[2025-11-22 05:58:50] 2025-11-22 10:58:50,676 [wrapper] Test setup, not cleaning
[2025-11-22 05:58:50] 2025-11-22 10:58:50,682 [wrapper] apfmon messages muted
[2025-11-22 05:58:50] 2025-11-22 10:58:50,686 [wrapper] ==== wrapper stdout END ====
[2025-11-22 05:58:50] 2025-11-22 10:58:50,691 [wrapper] ==== wrapper stderr END ====
[2025-11-22 05:58:50]  *** Error codes and diagnostics ***
[2025-11-22 05:58:50]     "exeErrorCode": 0,
[2025-11-22 05:58:50]     "exeErrorDiag": "",
[2025-11-22 05:58:50]     "pilotErrorCode": 0,
[2025-11-22 05:58:50]     "pilotErrorDiag": "",
[2025-11-22 05:58:50]  *** Listing of results directory ***
[2025-11-22 05:58:50] total 1724940
[2025-11-22 05:58:50] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 05:58:50] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 18:10 queuedata.json
[2025-11-22 05:58:50] -rwx------ 1 boincer umatlas     36292 Nov 20 18:11 runpilot2-wrapper.sh
[2025-11-22 05:58:50] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 18:11 pilot3.tar.gz
[2025-11-22 05:58:50] -rw-r--r-- 1 boincer umatlas       100 Nov 21 06:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 05:58:50] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 06:11 run_atlas
[2025-11-22 05:58:50] -rw-r--r-- 1 boincer umatlas       105 Nov 21 06:11 job.xml
[2025-11-22 05:58:50] -rw-r--r-- 3 boincer umatlas 408699485 Nov 21 06:11 EVNT.47493127._000971.pool.root.1
[2025-11-22 05:58:50] -rw-r--r-- 3 boincer umatlas 408699485 Nov 21 06:11 ATLAS.root_0
[2025-11-22 05:58:50] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 06:11 start_atlas.sh
[2025-11-22 05:58:50] drwxrwx--x 2 boincer umatlas      4096 Nov 21 06:11 shared
[2025-11-22 05:58:50] -rw-r--r-- 2 boincer umatlas    590093 Nov 21 06:11 input.tar.gz
[2025-11-22 05:58:50] -rw-r--r-- 1 boincer umatlas         0 Nov 21 06:11 boinc_lockfile
[2025-11-22 05:58:50] -rw-r--r-- 1 boincer umatlas      2786 Nov 21 17:10 pandaJob.out
[2025-11-22 05:58:50] -rw------- 1 boincer umatlas        57 Nov 21 17:11 setup.sh.local
[2025-11-22 05:58:50] -rw------- 1 boincer umatlas    989798 Nov 21 17:11 agis_schedconf.cvmfs.json
[2025-11-22 05:58:50] -rw-r--r-- 1 boincer umatlas       532 Nov 22 05:47 boinc_task_state.xml
[2025-11-22 05:58:50] -rw-r--r-- 1 boincer umatlas      5911 Nov 22 05:54 init_data.xml
[2025-11-22 05:58:50] -rw------- 1 boincer umatlas 928353521 Nov 22 05:57 HITS.47523449._009704.pool.root.1
[2025-11-22 05:58:50] -rw------- 1 boincer umatlas      1062 Nov 22 05:58 memory_monitor_summary.json
[2025-11-22 05:58:50] -rw------- 1 boincer umatlas   1526164 Nov 22 05:58 agis_ddmendpoints.agis.ALL.json
[2025-11-22 05:58:50] -rw------- 1 boincer umatlas   1988287 Nov 22 05:58 log.47523449._009704.job.log.tgz.1
[2025-11-22 05:58:50] -rw------- 1 boincer umatlas      8674 Nov 22 05:58 heartbeat.json
[2025-11-22 05:58:50] -rw-r--r-- 1 boincer umatlas        29 Nov 22 05:58 wrapper_checkpoint.txt
[2025-11-22 05:58:50] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 05:58 boinc_mmap_file
[2025-11-22 05:58:50] -rw------- 1 boincer umatlas        96 Nov 22 05:58 pilot_heartbeat.json
[2025-11-22 05:58:50] -rw------- 1 boincer umatlas       745 Nov 22 05:58 pilotlog.txt
[2025-11-22 05:58:50] -rw------- 1 boincer umatlas   6340059 Nov 22 05:58 log.47523449._009704.job.log.1
[2025-11-22 05:58:50] -rw------- 1 boincer umatlas       353 Nov 22 05:58 output.list
[2025-11-22 05:58:50] -rw-r--r-- 1 boincer umatlas       620 Nov 22 05:58 runtime_log
[2025-11-22 05:58:50] -rw------- 1 boincer umatlas   8345600 Nov 22 05:58 result.tar.gz
[2025-11-22 05:58:50] -rw-r--r-- 1 boincer umatlas      9428 Nov 22 05:58 runtime_log.err
[2025-11-22 05:58:50] -rw------- 1 boincer umatlas       793 Nov 22 05:58 CRNKDmHzSg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmE9GKDmM2l2Fn.diag
[2025-11-22 05:58:50] -rw-r--r-- 1 boincer umatlas     23479 Nov 22 05:58 stderr.txt
[2025-11-22 05:58:50] HITS file was successfully produced:
[2025-11-22 05:58:50] -rw------- 1 boincer umatlas 928353521 Nov 22 05:57 shared/HITS.pool.root.1
[2025-11-22 05:58:50]  *** Contents of shared directory: ***
[2025-11-22 05:58:50] total 1314476
[2025-11-22 05:58:50] -rw-r--r-- 3 boincer umatlas 408699485 Nov 21 06:11 ATLAS.root_0
[2025-11-22 05:58:50] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 06:11 start_atlas.sh
[2025-11-22 05:58:50] -rw-r--r-- 2 boincer umatlas    590093 Nov 21 06:11 input.tar.gz
[2025-11-22 05:58:50] -rw------- 1 boincer umatlas 928353521 Nov 22 05:57 HITS.pool.root.1
[2025-11-22 05:58:50] -rw------- 1 boincer umatlas   8345600 Nov 22 05:58 result.tar.gz
05:58:52 (8712): run_atlas exited; CPU time 352754.094749
05:58:52 (8712): called boinc_finish(0)

</stderr_txt>
]]>

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