Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:40:18 (1701528): wrapper (7.7.26015): starting
10:40:18 (1701528): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 10:40:18] Arguments: --nthreads 3
[2025-11-21 10:40:18] Threads: 3
[2025-11-21 10:40:18] Checking for CVMFS
[2025-11-21 10:40:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 10:40:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 10:40:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 10:40:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 10:40:18] 2.9.2.0 16720 1247 70508 153117 3 88 34492239 36864001 0 130560 0 17665371 100.000 32228 1352 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 10:40:18] CVMFS is ok
[2025-11-21 10:40:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 10:40:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 10:40:18] Further information can be found at the LHC@home message board.
[2025-11-21 10:40:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 10:40:18] Checking for apptainer binary...
[2025-11-21 10:40:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 10:40:18] Running /usr/bin/apptainer --version
[2025-11-21 10:40:18] apptainer version 1.4.1-1.1
[2025-11-21 10:40:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 10:40:18] thA335
[2025-11-21 10:40:18] apptainer works
[2025-11-21 10:40:18] Set ATHENA_PROC_NUMBER=3
[2025-11-21 10:40:18] Set ATHENA_CORE_NUMBER=3
[2025-11-21 10:40:18] Starting ATLAS job with PandaID=6893869745
[2025-11-21 10:40:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 10:44:34]  *** The last 200 lines of the pilot log: ***
[2025-11-21 10:44:34] 2025-11-21 09:43:43,406 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 10:44:34] 2025-11-21 09:43:43,406 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 10:44:34] 2025-11-21 09:43:43,713 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 10:44:34] 2025-11-21 09:43:43,714 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 10:44:34] 2025-11-21 09:43:43,714 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 10:44:34] 2025-11-21 09:43:43,714 | INFO     | will abort loop
[2025-11-21 10:44:34] 2025-11-21 09:43:43,790 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 10:44:34] 2025-11-21 09:43:43,939 | INFO     | all data control threads have been joined
[2025-11-21 10:44:34] 2025-11-21 09:43:44,230 | INFO     | all payload control threads have been joined
[2025-11-21 10:44:34] 2025-11-21 09:43:44,412 | INFO     | [job] retrieve thread has finished
[2025-11-21 10:44:34] 2025-11-21 09:43:44,413 | INFO     | [job] queue monitor thread has finished
[2025-11-21 10:44:34] 2025-11-21 09:43:44,718 | INFO     | [job] job monitor thread has finished
[2025-11-21 10:44:34] 2025-11-21 09:43:44,847 | INFO     | all job control threads have been joined
[2025-11-21 10:44:34] 2025-11-21 09:43:44,865 | INFO     | [payload] validate_post thread has finished
[2025-11-21 10:44:34] 2025-11-21 09:43:44,945 | INFO     | [data] control thread has finished
[2025-11-21 10:44:34] 2025-11-21 09:43:45,047 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 10:44:34] 2025-11-21 09:43:45,212 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 10:44:34] 2025-11-21 09:43:45,236 | INFO     | [payload] control thread has finished
[2025-11-21 10:44:34] 2025-11-21 09:43:45,239 | INFO     | [job] validate thread has finished
[2025-11-21 10:44:34] 2025-11-21 09:43:45,319 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 10:44:34] 2025-11-21 09:43:45,374 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 10:44:34] 2025-11-21 09:43:45,606 | INFO     | [data] copytool_in thread has finished
[2025-11-21 10:44:34] 2025-11-21 09:43:45,672 | INFO     | [payload] failed_post thread has finished
[2025-11-21 10:44:34] 2025-11-21 09:43:45,797 | INFO     | [data] copytool_out thread has finished
[2025-11-21 10:44:34] 2025-11-21 09:43:45,853 | INFO     | [job] control thread has finished
[2025-11-21 10:44:34] 2025-11-21 09:43:45,923 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 10:44:34] 2025-11-21 09:43:49,930 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 10:44:34] 2025-11-21 09:44:13,652 | INFO     | PID=1705259 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 10:44:34] 2025-11-21 09:44:13,652 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 10:44:34] 2025-11-21 09:44:13,652 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 10:44:34] 2025-11-21 09:44:13,652 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 10:44:34] 2025-11-21 09:44:28,485 | INFO     | [monitor] cgroup control has ended
[2025-11-21 10:44:34] 2025-11-21 09:44:29,770 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139881902540608)>', '<ExcThread(monitor, started 139881103746816)>']
[2025-11-21 10:44:34] 2025-11-21 09:44:30,740 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 10:44:34] 2025-11-21 09:44:30,741 | INFO     | [monitor] control thread has ended
[2025-11-21 10:44:34] 2025-11-21 09:44:34,795 | INFO     | all workflow threads have been joined
[2025-11-21 10:44:34] 2025-11-21 09:44:34,796 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 10:44:34] 2025-11-21 09:44:34,796 | INFO     | traces error code: 0
[2025-11-21 10:44:34] 2025-11-21 09:44:34,797 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 10:44:34] 2025-11-21 09:44:34,844 [wrapper] ==== pilot stdout END ====
[2025-11-21 10:44:34] 2025-11-21 09:44:34,847 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 10:44:34] 2025-11-21 09:44:34,850 [wrapper] pilotpid: 1705259
[2025-11-21 10:44:34] 2025-11-21 09:44:34,853 [wrapper] Pilot exit status: 0
[2025-11-21 10:44:34] 2025-11-21 09:44:34,860 [wrapper] pandaids: 6893869745
[2025-11-21 10:44:34] 2025-11-21 09:44:34,877 [wrapper] cleanup supervisor_pilot 1705265 1705260
[2025-11-21 10:44:34] 2025-11-21 09:44:34,880 [wrapper] Test setup, not cleaning
[2025-11-21 10:44:34] 2025-11-21 09:44:34,882 [wrapper] apfmon messages muted
[2025-11-21 10:44:34] 2025-11-21 09:44:34,885 [wrapper] ==== wrapper stdout END ====
[2025-11-21 10:44:34] 2025-11-21 09:44:34,888 [wrapper] ==== wrapper stderr END ====
[2025-11-21 10:44:34]  *** Error codes and diagnostics ***
[2025-11-21 10:44:34]     "exeErrorCode": 65,
[2025-11-21 10:44:34]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 10:44:34]     "pilotErrorCode": 1305,
[2025-11-21 10:44:34]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 10:44:34]  *** Listing of results directory ***
[2025-11-21 10:44:34] total 404480
[2025-11-21 10:44:34] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-21 10:44:34] -rwx------ 1 boinc boinc     36292 Nov 20 15:41 runpilot2-wrapper.sh
[2025-11-21 10:44:34] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:41 queuedata.json
[2025-11-21 10:44:34] -rw-r--r-- 1 boinc boinc       100 Nov 21 10:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 10:44:34] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 10:40 run_atlas
[2025-11-21 10:44:34] -rw-r--r-- 1 boinc boinc       105 Nov 21 10:40 job.xml
[2025-11-21 10:44:34] -rw-r--r-- 2 boinc boinc 409985768 Nov 21 10:40 EVNT.47493127._000638.pool.root.1
[2025-11-21 10:44:34] -rw-r--r-- 2 boinc boinc    590099 Nov 21 10:40 input.tar.gz
[2025-11-21 10:44:34] -rw-r--r-- 2 boinc boinc     15847 Nov 21 10:40 start_atlas.sh
[2025-11-21 10:44:34] drwxrwx--x 2 boinc boinc      4096 Nov 21 10:40 shared
[2025-11-21 10:44:34] -rw-r--r-- 1 boinc boinc         0 Nov 21 10:40 boinc_setup_complete
[2025-11-21 10:44:34] -rw-r--r-- 1 boinc boinc      6194 Nov 21 10:40 init_data.xml
[2025-11-21 10:44:34] -rw-r--r-- 1 boinc boinc         0 Nov 21 10:40 boinc_lockfile
[2025-11-21 10:44:34] -rw-r--r-- 1 boinc boinc      2785 Nov 21 10:40 pandaJob.out
[2025-11-21 10:44:34] -rw------- 1 boinc boinc    989817 Nov 21 10:40 agis_schedconf.cvmfs.json
[2025-11-21 10:44:34] -rw------- 1 boinc boinc   1526164 Nov 21 10:40 agis_ddmendpoints.agis.ALL.json
[2025-11-21 10:44:34] drwx------ 5 boinc boinc      4096 Nov 21 10:40 pilot3
[2025-11-21 10:44:34] -rw-r--r-- 1 boinc boinc       523 Nov 21 10:41 boinc_task_state.xml
[2025-11-21 10:44:34] -rw------- 1 boinc boinc       964 Nov 21 10:41 memory_monitor_summary.json
[2025-11-21 10:44:34] -rw------- 1 boinc boinc     55704 Nov 21 10:41 log.47523449._006374.job.log.tgz.1
[2025-11-21 10:44:34] -rw------- 1 boinc boinc        95 Nov 21 10:43 pilot_heartbeat.json
[2025-11-21 10:44:34] -rw------- 1 boinc boinc      8404 Nov 21 10:43 heartbeat.json
[2025-11-21 10:44:34] -rw-r--r-- 1 boinc boinc      8192 Nov 21 10:44 boinc_mmap_file
[2025-11-21 10:44:34] -rw-r--r-- 1 boinc boinc        23 Nov 21 10:44 wrapper_checkpoint.txt
[2025-11-21 10:44:34] -rw------- 1 boinc boinc      4938 Nov 21 10:44 pilotlog.txt
[2025-11-21 10:44:34] -rw------- 1 boinc boinc     93750 Nov 21 10:44 log.47523449._006374.job.log.1
[2025-11-21 10:44:34] -rw------- 1 boinc boinc       186 Nov 21 10:44 output.list
[2025-11-21 10:44:34] -rw-r--r-- 1 boinc boinc       620 Nov 21 10:44 runtime_log
[2025-11-21 10:44:34] -rw------- 1 boinc boinc    174080 Nov 21 10:44 result.tar.gz
[2025-11-21 10:44:34] -rw-r--r-- 1 boinc boinc      8744 Nov 21 10:44 runtime_log.err
[2025-11-21 10:44:34] -rw------- 1 boinc boinc       649 Nov 21 10:44 d1GLDmU1Kg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmb7HKDmEy9okn.diag
[2025-11-21 10:44:34] -rw-r--r-- 1 boinc boinc      7941 Nov 21 10:44 stderr.txt
[2025-11-21 10:44:34] No HITS result produced
[2025-11-21 10:44:34]  *** Contents of shared directory: ***
[2025-11-21 10:44:34] total 401152
[2025-11-21 10:44:34] -rw-r--r-- 2 boinc boinc 409985768 Nov 21 10:40 ATLAS.root_0
[2025-11-21 10:44:34] -rw-r--r-- 2 boinc boinc    590099 Nov 21 10:40 input.tar.gz
[2025-11-21 10:44:34] -rw-r--r-- 2 boinc boinc     15847 Nov 21 10:40 start_atlas.sh
[2025-11-21 10:44:34] -rw------- 1 boinc boinc    174080 Nov 21 10:44 result.tar.gz
10:44:36 (1701528): run_atlas exited; CPU time 31.527497
10:44:36 (1701528): called boinc_finish(0)

</stderr_txt>
]]>

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