Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
09:32:28 (10311): wrapper (7.7.26015): starting
09:32:28 (10311): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 09:32:28] Arguments: --nthreads 8
[2025-11-21 09:32:28] Threads: 8
[2025-11-21 09:32:28] Checking for CVMFS
[2025-11-21 09:32:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 09:32:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 09:32:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 09:32:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 09:32:31] 2.13.3.0 10580 0 31588 153117 3 1 1986589 6144001 0 130560 0 0 0.000 1292 1309 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-21 09:32:31] CVMFS is ok
[2025-11-21 09:32:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 09:32:31] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-21 09:32:31] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-21 09:32:31] Further information can be found at the LHC@home message board.
[2025-11-21 09:32:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 09:32:31] Checking for apptainer binary...
[2025-11-21 09:32:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 09:32:31] Running /usr/bin/apptainer --version
[2025-11-21 09:32:32] apptainer version 1.4.4
[2025-11-21 09:32:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 09:32:32] stone
[2025-11-21 09:32:32] apptainer works
[2025-11-21 09:32:32] Set ATHENA_PROC_NUMBER=8
[2025-11-21 09:32:32] Set ATHENA_CORE_NUMBER=8
[2025-11-21 09:32:32] Starting ATLAS job with PandaID=6893871895
[2025-11-21 09:32:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 18:38:43]  *** The last 200 lines of the pilot log: ***
[2025-11-21 18:38:43] 2025-11-21 18:38:06,938 | INFO     | intersect: -19707788794.268215
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | chi2: 0.0727047841935707
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | current memory leak: 11.18 B/s (using 498 data points, chi2=0.07)
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | could have reported an average CPU frequency of 3400 MHz (21 samples)
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | ..............................
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . Timing measurements:
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . get job = 0 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . initial setup = 1 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . payload setup = 24 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . stage-in = 0 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . payload execution = 32560 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . stage-out = 1 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . log creation = 0 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | ..............................
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 18:38:43] 2025-11-21 18:38:06,940 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/1/PanDA_Pilot-6893871895/pilotlog.txt
[2025-11-21 18:38:43] 2025-11-21 18:38:06,945 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 18:38:43] - Log from pilotlog.txt -
[2025-11-21 18:38:43] 2025-11-21 18:38:06,936 | INFO     | sum of square deviations: 38296995264.5
[2025-11-21 18:38:43] 2025-11-21 18:38:06,938 | INFO     | sum of deviations: 427991503576.9999
[2025-11-21 18:38:43] 2025-11-21 18:38:06,938 | INFO     | mean x: 1763733981.5
[2025-11-21 18:38:43] 2025-11-21 18:38:06,938 | INFO     | mean y: 2978419.674698795
[2025-11-21 18:38:43] 2025-11-21 18:38:06,938 | INFO     | intersect: -19707788794.268215
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | chi2: 0.0727047841935707
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | current memory leak: 11.18 B/s (using 498 data points, chi2=0.07)
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | could have reported an average CPU frequency of 3400 MHz (21 samples)
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | ..............................
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . Timing measurements:
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . get job = 0 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . initial setup = 1 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . payload setup = 24 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . stage-in = 0 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . payload execution = 32560 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . stage-out = 1 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . log creation = 0 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | ..............................
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 18:38:43] 2025-11-21 18:38:06,940 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/1/PanDA_Pilot-6893871895/pilotlog.txt
[2025-11-21 18:38:43] 2025-11-21 18:38:06,945 | WARNING  | 
[2025-11-21 18:38:43] [begin log extracts]
[2025-11-21 18:38:43] - Log from pilotlog.txt -
[2025-11-21 18:38:43] 2025-11-21 18:38:06,936 | INFO     | sum of square deviations: 38296995264.5
[2025-11-21 18:38:43] 2025-11-21 18:38:06,938 | INFO     | sum of deviations: 427991503576.9999
[2025-11-21 18:38:43] 2025-11-21 18:38:06,938 | INFO     | mean x: 1763733981.5
[2025-11-21 18:38:43] 2025-11-21 18:38:06,938 | INFO     | mean y: 2978419.674698795
[2025-11-21 18:38:43] 2025-11-21 18:38:06,938 | INFO     | intersect: -19707788794.268215
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | chi2: 0.0727047841935707
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | current memory leak: 11.18 B/s (using 498 data points, chi2=0.07)
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | could have reported an average CPU frequency of 3400 MHz (21 samples)
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | ..............................
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . Timing measurements:
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . get job = 0 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . initial setup = 1 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . payload setup = 24 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . stage-in = 0 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . payload execution = 32560 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . stage-out = 1 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | . log creation = 0 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | ..............................
[2025-11-21 18:38:43] 2025-11-21 18:38:06,939 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 18:38:43] 2025-11-21 18:38:06,940 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/1/PanDA_Pilot-6893871895/pilotlog.txt
[2025-11-21 18:38:43] [end log extracts]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,945 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 18:38:43] 2025-11-21 18:38:06,946 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | 
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | job summary report
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | --------------------------------------------------
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | PanDA job id: 6893871895
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | task id: 47523449
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 18:35:56,480 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | pilot state: failed 
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | transexitcode: 65
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | exeerrorcode: 65
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | exeerrordiag: Non-zero return code from HITSMergeAthenaMP0 (1); Logfile error in log.HITSMergeAthenaMP0: "Segmentation fault: Event counter: 0; Run: unknown; Evt: 
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | exitcode: 65
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | exitmsg: Non-zero return code from HITSMergeAthenaMP0 (1); Logfile error in log.HITSMergeAthenaMP0: "Segmentation fault: Event counter: 0; Run: unknown; Evt: unkno
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | cpuconsumptiontime: 247133 s
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | nevents: 0
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | neventsw: 0
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | pid: 21471
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | pgrp: 21471
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | corecount: 8
[2025-11-21 18:38:43] 2025-11-21 18:38:06,982 | INFO     | event service: False
[2025-11-21 18:38:43] 2025-11-21 18:38:06,983 | INFO     | sizes: {0: 2298806, 2: 2299068, 11: 2299096, 32589: 2340223, 32590: 2340227, 32591: 2344576, 32592: 2344760, 32712: 2345006}
[2025-11-21 18:38:43] 2025-11-21 18:38:06,983 | INFO     | --------------------------------------------------
[2025-11-21 18:38:43] 2025-11-21 18:38:06,983 | INFO     | 
[2025-11-21 18:38:43] 2025-11-21 18:38:06,983 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-11-21 18:38:43] 2025-11-21 18:38:06,991 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,991 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,991 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,991 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | job 6893871895 has completed (purged errors)
[2025-11-21 18:38:43] 2025-11-21 18:38:06,992 | INFO     | overall cleanup function is called
[2025-11-21 18:38:43] 2025-11-21 18:38:08,002 | INFO     | --- collectZombieJob: --- 10, [21471]
[2025-11-21 18:38:43] 2025-11-21 18:38:08,002 | INFO     | zombie collector waiting for pid 21471
[2025-11-21 18:38:43] 2025-11-21 18:38:08,002 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 18:38:43] 2025-11-21 18:38:08,002 | INFO     | collected zombie processes
[2025-11-21 18:38:43] 2025-11-21 18:38:08,002 | INFO     | will attempt to kill all subprocesses of pid=21471
[2025-11-21 18:38:43] 2025-11-21 18:38:08,045 | INFO     | process IDs to be killed: [21471] (in reverse order)
[2025-11-21 18:38:43] 2025-11-21 18:38:08,065 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 18:38:43] 2025-11-21 18:38:08,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 18:38:43] 2025-11-21 18:38:08,066 | INFO     | did not find any defunct processes belonging to 21471
[2025-11-21 18:38:43] 2025-11-21 18:38:08,067 | INFO     | did not find any defunct processes belonging to 21471
[2025-11-21 18:38:43] 2025-11-21 18:38:08,068 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 18:38:43] 2025-11-21 18:38:08,068 | INFO     | ready for new job
[2025-11-21 18:38:43] 2025-11-21 18:38:08,069 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 18:38:43] 2025-11-21 18:38:08,070 | INFO     | ***************************************
[2025-11-21 18:38:43] 2025-11-21 18:38:08,070 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 18:38:43] 2025-11-21 18:38:08,070 | INFO     | ***************************************
[2025-11-21 18:38:43] 2025-11-21 18:38:08,070 | INFO     | 
[2025-11-21 18:38:43] 2025-11-21 18:38:08,071 | INFO     | architecture information:
[2025-11-21 18:38:43] 2025-11-21 18:38:08,071 | INFO     | executing command: cat /etc/os-release
[2025-11-21 18:38:43] 2025-11-21 18:38:08,077 | INFO     | cat /etc/os-release:
[2025-11-21 18:38:43] NAME="CentOS Linux"
[2025-11-21 18:38:43] VERSION="7 (Core)"
[2025-11-21 18:38:43] ID="centos"
[2025-11-21 18:38:43] ID_LIKE="rhel fedora"
[2025-11-21 18:38:43] VERSION_ID="7"
[2025-11-21 18:38:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 18:38:43] ANSI_COLOR="0;31"
[2025-11-21 18:38:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 18:38:43] HOME_URL="https://www.centos.org/"
[2025-11-21 18:38:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 18:38:43] 
[2025-11-21 18:38:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 18:38:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 18:38:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 18:38:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 18:38:43] 
[2025-11-21 18:38:43] 2025-11-21 18:38:08,077 | INFO     | ***************************************
[2025-11-21 18:38:43] 2025-11-21 18:38:08,580 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-11-21 18:38:43] 2025-11-21 18:38:08,586 | INFO     | sufficient remaining disk space (20170407936 B)
[2025-11-21 18:38:43] 2025-11-21 18:38:08,587 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 18:38:43] 2025-11-21 18:38:08,587 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 18:38:43] 2025-11-21 18:38:08,587 | INFO     | update_server=False
[2025-11-21 18:38:43] 2025-11-21 18:38:08,587 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 18:38:43] 2025-11-21 18:38:08,587 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:38:43] 2025-11-21 18:38:09,061 | INFO     | all data control threads have been joined
[2025-11-21 18:38:43] 2025-11-21 18:38:09,273 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:38:43] 2025-11-21 18:38:09,273 | INFO     | aborting loop
[2025-11-21 18:38:43] 2025-11-21 18:38:09,592 | INFO     | [job] retrieve thread has finished
[2025-11-21 18:38:43] 2025-11-21 18:38:09,593 | INFO     | [job] queue monitor thread has finished
[2025-11-21 18:38:43] 2025-11-21 18:38:09,656 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 18:38:43] 2025-11-21 18:38:09,662 | INFO     | [data] copytool_in thread has finished
[2025-11-21 18:38:43] 2025-11-21 18:38:09,950 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 18:38:43] 2025-11-21 18:38:09,995 | INFO     | all job control threads have been joined
[2025-11-21 18:38:43] 2025-11-21 18:38:10,015 | INFO     | all payload control threads have been joined
[2025-11-21 18:38:43] 2025-11-21 18:38:10,065 | INFO     | [data] control thread has finished
[2025-11-21 18:38:43] 2025-11-21 18:38:10,223 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 18:38:43] 2025-11-21 18:38:10,278 | INFO     | [job] job monitor thread has finished
[2025-11-21 18:38:43] 2025-11-21 18:38:10,306 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 18:38:43] 2025-11-21 18:38:10,394 | INFO     | [job] validate thread has finished
[2025-11-21 18:38:43] 2025-11-21 18:38:10,423 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 18:38:43] 2025-11-21 18:38:10,847 | INFO     | [payload] validate_post thread has finished
[2025-11-21 18:38:43] 2025-11-21 18:38:10,950 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 18:38:43] 2025-11-21 18:38:11,001 | INFO     | [job] control thread has finished
[2025-11-21 18:38:43] 2025-11-21 18:38:11,021 | INFO     | [payload] control thread has finished
[2025-11-21 18:38:43] 2025-11-21 18:38:11,024 | INFO     | [payload] failed_post thread has finished
[2025-11-21 18:38:43] 2025-11-21 18:38:11,661 | INFO     | [data] copytool_out thread has finished
[2025-11-21 18:38:43] 2025-11-21 18:38:13,956 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 18:38:43] 2025-11-21 18:38:36,609 | INFO     | [monitor] cgroup control has ended
[2025-11-21 18:38:43] 2025-11-21 18:38:38,646 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140472470964032)>', '<ExcThread(monitor, started 140471468816128)>']
[2025-11-21 18:38:43] 2025-11-21 18:38:39,631 | INFO     | PID=14871 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 18:38:43] 2025-11-21 18:38:39,632 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 18:38:43] 2025-11-21 18:38:39,632 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 18:38:43] 2025-11-21 18:38:39,632 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 18:38:43] 2025-11-21 18:38:39,632 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 18:38:43] 2025-11-21 18:38:39,632 | INFO     | [monitor] control thread has ended
[2025-11-21 18:38:43] 2025-11-21 18:38:43,672 | INFO     | all workflow threads have been joined
[2025-11-21 18:38:43] 2025-11-21 18:38:43,672 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 18:38:43] 2025-11-21 18:38:43,673 | INFO     | traces error code: 0
[2025-11-21 18:38:43] 2025-11-21 18:38:43,673 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 18:38:43] 2025-11-21 18:38:43,747 [wrapper] ==== pilot stdout END ====
[2025-11-21 18:38:43] 2025-11-21 18:38:43,748 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 18:38:43] 2025-11-21 18:38:43,749 [wrapper] pilotpid: 14871
[2025-11-21 18:38:43] 2025-11-21 18:38:43,751 [wrapper] Pilot exit status: 0
[2025-11-21 18:38:43] 2025-11-21 18:38:43,755 [wrapper] pandaids: 6893871895
[2025-11-21 18:38:43] 2025-11-21 18:38:43,766 [wrapper] cleanup supervisor_pilot  212150 14872
[2025-11-21 18:38:43] 2025-11-21 18:38:43,767 [wrapper] Test setup, not cleaning
[2025-11-21 18:38:43] 2025-11-21 18:38:43,768 [wrapper] apfmon messages muted
[2025-11-21 18:38:43] 2025-11-21 18:38:43,770 [wrapper] ==== wrapper stdout END ====
[2025-11-21 18:38:43] 2025-11-21 18:38:43,771 [wrapper] ==== wrapper stderr END ====
[2025-11-21 18:38:43]  *** Error codes and diagnostics ***
[2025-11-21 18:38:43]     "exeErrorCode": 65,
[2025-11-21 18:38:43]     "exeErrorDiag": "Non-zero return code from HITSMergeAthenaMP0 (1); Logfile error in log.HITSMergeAthenaMP0: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: <NONE>; Current Function: unknown\"",
[2025-11-21 18:38:43]     "pilotErrorCode": 1305,
[2025-11-21 18:38:43]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from HITSMergeAthenaMP0 (1); Logfile error in log.HITSMergeAthenaMP0: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; C",
[2025-11-21 18:38:43]  *** Listing of results directory ***
[2025-11-21 18:38:43] total 416688
[2025-11-21 18:38:43] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:07 pilot3.tar.gz
[2025-11-21 18:38:43] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:09 queuedata.json
[2025-11-21 18:38:43] -rwx------ 1 boinc boinc     36292 Nov 20 15:10 runpilot2-wrapper.sh
[2025-11-21 18:38:43] -rw-r--r-- 1 boinc boinc       100 Nov 21 09:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 18:38:43] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 09:32 run_atlas
[2025-11-21 18:38:43] -rw-r--r-- 1 boinc boinc       105 Nov 21 09:32 job.xml
[2025-11-21 18:38:43] -rw-r--r-- 2 boinc boinc 410213842 Nov 21 09:32 EVNT.47493127._000670.pool.root.1
[2025-11-21 18:38:43] -rw-r--r-- 2 boinc boinc    590102 Nov 21 09:32 input.tar.gz
[2025-11-21 18:38:43] -rw-r--r-- 2 boinc boinc     15847 Nov 21 09:32 start_atlas.sh
[2025-11-21 18:38:43] drwxrwx--x 2 boinc boinc      4096 Nov 21 09:32 shared
[2025-11-21 18:38:43] -rw-r--r-- 1 boinc boinc         0 Nov 21 09:32 boinc_setup_complete
[2025-11-21 18:38:43] -rw-r--r-- 1 boinc boinc      6093 Nov 21 09:32 init_data.xml
[2025-11-21 18:38:43] -rw-r--r-- 1 boinc boinc         0 Nov 21 09:32 boinc_lockfile
[2025-11-21 18:38:43] -rw-r--r-- 1 boinc boinc      2785 Nov 21 09:32 pandaJob.out
[2025-11-21 18:38:43] -rw------- 1 boinc boinc    989817 Nov 21 09:32 agis_schedconf.cvmfs.json
[2025-11-21 18:38:43] drwx------ 5 boinc boinc      4096 Nov 21 09:32 pilot3
[2025-11-21 18:38:43] -rw-r--r-- 1 boinc boinc       532 Nov 21 18:24 boinc_task_state.xml
[2025-11-21 18:38:43] -rw------- 1 boinc boinc      1035 Nov 21 18:36 memory_monitor_summary.json
[2025-11-21 18:38:43] -rw------- 1 boinc boinc   1728345 Nov 21 18:36 log.47523449._006695.job.log.tgz.1
[2025-11-21 18:38:43] -rw------- 1 boinc boinc   1526164 Nov 21 18:36 agis_ddmendpoints.agis.ALL.json
[2025-11-21 18:38:43] -rw------- 1 boinc boinc     10408 Nov 21 18:38 heartbeat.json
[2025-11-21 18:38:43] -rw-r--r-- 1 boinc boinc      8192 Nov 21 18:38 boinc_mmap_file
[2025-11-21 18:38:43] -rw-r--r-- 1 boinc boinc        29 Nov 21 18:38 wrapper_checkpoint.txt
[2025-11-21 18:38:43] -rw------- 1 boinc boinc        95 Nov 21 18:38 pilot_heartbeat.json
[2025-11-21 18:38:43] -rw------- 1 boinc boinc      4746 Nov 21 18:38 pilotlog.txt
[2025-11-21 18:38:43] -rw------- 1 boinc boinc   4552200 Nov 21 18:38 log.47523449._006695.job.log.1
[2025-11-21 18:38:43] -rw------- 1 boinc boinc       186 Nov 21 18:38 output.list
[2025-11-21 18:38:43] -rw-r--r-- 1 boinc boinc       620 Nov 21 18:38 runtime_log
[2025-11-21 18:38:43] -rw------- 1 boinc boinc   6297600 Nov 21 18:38 result.tar.gz
[2025-11-21 18:38:43] -rw------- 1 boinc boinc       646 Nov 21 18:38 zLsNDmVTLg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUqGKDmBJiGsm.diag
[2025-11-21 18:38:43] -rw-r--r-- 1 boinc boinc      8609 Nov 21 18:38 runtime_log.err
[2025-11-21 18:38:43] -rw-r--r-- 1 boinc boinc     22130 Nov 21 18:38 stderr.txt
[2025-11-21 18:38:43] No HITS result produced
[2025-11-21 18:38:43]  *** Contents of shared directory: ***
[2025-11-21 18:38:43] total 407352
[2025-11-21 18:38:43] -rw-r--r-- 2 boinc boinc 410213842 Nov 21 09:32 ATLAS.root_0
[2025-11-21 18:38:43] -rw-r--r-- 2 boinc boinc    590102 Nov 21 09:32 input.tar.gz
[2025-11-21 18:38:43] -rw-r--r-- 2 boinc boinc     15847 Nov 21 09:32 start_atlas.sh
[2025-11-21 18:38:43] -rw------- 1 boinc boinc   6297600 Nov 21 18:38 result.tar.gz
18:38:45 (10311): run_atlas exited; CPU time 247207.526826
18:38:45 (10311): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN