Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
04:04:36 (1894048): wrapper (7.7.26015): starting
04:04:36 (1894048): wrapper: running run_atlas (--nthreads 2)
[2025-11-21 04:04:36] Arguments: --nthreads 2
[2025-11-21 04:04:36] Threads: 2
[2025-11-21 04:04:36] Checking for CVMFS
[2025-11-21 04:04:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 04:04:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 04:04:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 04:04:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 04:04:38] 2.13.3.0 1568298 966 43576 153104 2 81 3015628 4096001 803 130560 0 554617 99.985 38372 3746 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-21 04:04:38] CVMFS is ok
[2025-11-21 04:04:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 04:04:38] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-21 04:04:38] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-21 04:04:38] Further information can be found at the LHC@home message board.
[2025-11-21 04:04:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 04:04:38] Checking for apptainer binary...
[2025-11-21 04:04:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 04:04:38] Running /usr/bin/apptainer --version
[2025-11-21 04:04:38] apptainer version 1.4.4
[2025-11-21 04:04:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 04:04:38] Ryzen-9-7950X3D-Zen4-Ubu24
[2025-11-21 04:04:38] apptainer works
[2025-11-21 04:04:38] Set ATHENA_PROC_NUMBER=2
[2025-11-21 04:04:38] Set ATHENA_CORE_NUMBER=2
[2025-11-21 04:04:38] Starting ATLAS job with PandaID=6893851969
[2025-11-21 04:04:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 18:16:36]  *** The last 200 lines of the pilot log: ***
[2025-11-21 18:16:36] 2025-11-21 16:16:03,065 | INFO     | monitor loop #3587: job 0:6893851969 is in state 'finished'
[2025-11-21 18:16:36] 2025-11-21 16:16:03,065 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 18:16:36] 2025-11-21 16:16:04,161 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 18:16:36] 2025-11-21 16:16:04,163 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4640.25184375
[2025-11-21 18:16:36] 2025-11-21 16:16:04,165 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6893851969/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 18:16:36] 2025-11-21 16:16:04,166 | INFO     | extracted standard info from prmon json
[2025-11-21 18:16:36] 2025-11-21 16:16:04,166 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 18:16:36] 2025-11-21 16:16:04,166 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 18:16:36] 2025-11-21 16:16:04,170 | INFO     | fitting pss+swap vs Time
[2025-11-21 18:16:36] 2025-11-21 16:16:04,170 | INFO     | sum of square deviations: 146021396454.5
[2025-11-21 18:16:36] 2025-11-21 16:16:04,175 | INFO     | sum of deviations: 251459185499.50012
[2025-11-21 18:16:36] 2025-11-21 16:16:04,175 | INFO     | mean x: 1763718011.5
[2025-11-21 18:16:36] 2025-11-21 16:16:04,175 | INFO     | mean y: 1941778.1606683806
[2025-11-21 18:16:36] 2025-11-21 16:16:04,175 | INFO     | intersect: -3035305538.9527707
[2025-11-21 18:16:36] 2025-11-21 16:16:04,176 | INFO     | chi2: 3.2727582042953305
[2025-11-21 18:16:36] 2025-11-21 16:16:04,176 | INFO     | sum of square deviations: 143224125402.0
[2025-11-21 18:16:36] 2025-11-21 16:16:04,181 | INFO     | sum of deviations: 343300252938.99976
[2025-11-21 18:16:36] 2025-11-21 16:16:04,181 | INFO     | mean x: 1763717859.0
[2025-11-21 18:16:36] 2025-11-21 16:16:04,181 | INFO     | mean y: 1946773.0465717982
[2025-11-21 18:16:36] 2025-11-21 16:16:04,181 | INFO     | intersect: -4225586719.7100616
[2025-11-21 18:16:36] 2025-11-21 16:16:04,181 | INFO     | chi2: 1.8326595353709971
[2025-11-21 18:16:36] 2025-11-21 16:16:04,181 | INFO     | current chi2=1.8326595353709971 (change=44.00259900148677 %)
[2025-11-21 18:16:36] 2025-11-21 16:16:04,181 | INFO     | sum of square deviations: 140462808512.0
[2025-11-21 18:16:36] 2025-11-21 16:16:04,187 | INFO     | sum of deviations: 338605570725.5
[2025-11-21 18:16:36] 2025-11-21 16:16:04,187 | INFO     | mean x: 1763717706.5
[2025-11-21 18:16:36] 2025-11-21 16:16:04,187 | INFO     | mean y: 1946513.77734375
[2025-11-21 18:16:36] 2025-11-21 16:16:04,187 | INFO     | intersect: -4249745780.678538
[2025-11-21 18:16:36] 2025-11-21 16:16:04,187 | INFO     | chi2: 1.8326571725071734
[2025-11-21 18:16:36] 2025-11-21 16:16:04,187 | INFO     | current chi2=1.8326571725071734 (change=0.0001289308667599532 %)
[2025-11-21 18:16:36] 2025-11-21 16:16:04,187 | INFO     | right removable region: 767
[2025-11-21 18:16:36] 2025-11-21 16:16:04,187 | INFO     | sum of square deviations: 143224125402.0
[2025-11-21 18:16:36] 2025-11-21 16:16:04,192 | INFO     | sum of deviations: 134376686194.99994
[2025-11-21 18:16:36] 2025-11-21 16:16:04,192 | INFO     | mean x: 1763718164.0
[2025-11-21 18:16:36] 2025-11-21 16:16:04,192 | INFO     | mean y: 1948147.2483829237
[2025-11-21 18:16:36] 2025-11-21 16:16:04,192 | INFO     | intersect: -1652819173.5157201
[2025-11-21 18:16:36] 2025-11-21 16:16:04,192 | INFO     | chi2: 1.489525729207778
[2025-11-21 18:16:36] 2025-11-21 16:16:04,192 | INFO     | current chi2=1.489525729207778 (change=54.487143985985576 %)
[2025-11-21 18:16:36] 2025-11-21 16:16:04,193 | INFO     | sum of square deviations: 140462808512.0
[2025-11-21 18:16:36] 2025-11-21 16:16:04,197 | INFO     | sum of deviations: 132799158393.49983
[2025-11-21 18:16:36] 2025-11-21 16:16:04,197 | INFO     | mean x: 1763718316.5
[2025-11-21 18:16:36] 2025-11-21 16:16:04,197 | INFO     | mean y: 1948234.1263020833
[2025-11-21 18:16:36] 2025-11-21 16:16:04,198 | INFO     | intersect: -1665541619.989711
[2025-11-21 18:16:36] 2025-11-21 16:16:04,198 | INFO     | chi2: 1.4891161533435908
[2025-11-21 18:16:36] 2025-11-21 16:16:04,198 | INFO     | current chi2=1.4891161533435908 (change=0.02749706541859763 %)
[2025-11-21 18:16:36] 2025-11-21 16:16:04,198 | INFO     | left removable region: 20
[2025-11-21 18:16:36] 2025-11-21 16:16:04,198 | INFO     | sum of square deviations: 129252648558.0
[2025-11-21 18:16:36] 2025-11-21 16:16:04,203 | INFO     | sum of deviations: 206643715290.00006
[2025-11-21 18:16:36] 2025-11-21 16:16:04,203 | INFO     | mean x: 1763718286.0
[2025-11-21 18:16:36] 2025-11-21 16:16:04,203 | INFO     | mean y: 1953827.8714859437
[2025-11-21 18:16:36] 2025-11-21 16:16:04,203 | INFO     | intersect: -2817805019.7037334
[2025-11-21 18:16:36] 2025-11-21 16:16:04,203 | INFO     | chi2: 0.030118738507738767
[2025-11-21 18:16:36] 2025-11-21 16:16:04,203 | INFO     | current memory leak: 1.60 B/s (using 747 data points, chi2=0.03)
[2025-11-21 18:16:36] 2025-11-21 16:16:04,203 | INFO     | could have reported an average CPU frequency of 4597 MHz (30 samples)
[2025-11-21 18:16:36] 2025-11-21 16:16:04,204 | INFO     | ..............................
[2025-11-21 18:16:36] 2025-11-21 16:16:04,204 | INFO     | . Timing measurements:
[2025-11-21 18:16:36] 2025-11-21 16:16:04,204 | INFO     | . get job = 0 s
[2025-11-21 18:16:36] 2025-11-21 16:16:04,204 | INFO     | . initial setup = 1 s
[2025-11-21 18:16:36] 2025-11-21 16:16:04,204 | INFO     | . payload setup = 4 s
[2025-11-21 18:16:36] 2025-11-21 16:16:04,204 | INFO     | . stage-in = 0 s
[2025-11-21 18:16:36] 2025-11-21 16:16:04,204 | INFO     | . payload execution = 47443 s
[2025-11-21 18:16:36] 2025-11-21 16:16:04,204 | INFO     | . stage-out = 1 s
[2025-11-21 18:16:36] 2025-11-21 16:16:04,204 | INFO     | . log creation = 0 s
[2025-11-21 18:16:36] 2025-11-21 16:16:04,204 | INFO     | ..............................
[2025-11-21 18:16:36] 2025-11-21 16:16:04,311 | INFO     | time since job start (47475s) is within the limit (172800.0s)
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | 
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | job summary report
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | --------------------------------------------------
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | PanDA job id: 6893851969
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | task id: 47523449
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | errors: (none)
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | pilot state: finished 
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | transexitcode: 0
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | exeerrorcode: 0
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | exeerrordiag: 
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | exitcode: 0
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | exitmsg: OK
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | cpuconsumptiontime: 94601 s
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | nevents: 1000
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | neventsw: 0
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | pid: 1904969
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | pgrp: 1904969
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | corecount: 2
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | event service: False
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | sizes: {0: 2298587, 1: 2298842, 4: 2299104, 11: 2299132, 47451: 2346965, 47452: 2346964, 47454: 2356212, 47461: 2356402}
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | --------------------------------------------------
[2025-11-21 18:16:36] 2025-11-21 16:16:04,641 | INFO     | 
[2025-11-21 18:16:36] 2025-11-21 16:16:04,642 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,694 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 18:16:36] 2025-11-21 16:16:04,695 | INFO     | job 6893851969 has completed (purged errors)
[2025-11-21 18:16:36] 2025-11-21 16:16:04,695 | INFO     | overall cleanup function is called
[2025-11-21 18:16:36] 2025-11-21 16:16:05,708 | INFO     | --- collectZombieJob: --- 10, [1904969]
[2025-11-21 18:16:36] 2025-11-21 16:16:05,708 | INFO     | zombie collector waiting for pid 1904969
[2025-11-21 18:16:36] 2025-11-21 16:16:05,708 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 18:16:36] 2025-11-21 16:16:05,708 | INFO     | collected zombie processes
[2025-11-21 18:16:36] 2025-11-21 16:16:05,708 | INFO     | will attempt to kill all subprocesses of pid=1904969
[2025-11-21 18:16:36] 2025-11-21 16:16:05,775 | INFO     | process IDs to be killed: [1904969] (in reverse order)
[2025-11-21 18:16:36] 2025-11-21 16:16:05,856 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 18:16:36] 2025-11-21 16:16:05,857 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 18:16:36] 2025-11-21 16:16:05,859 | INFO     | did not find any defunct processes belonging to 1904969
[2025-11-21 18:16:36] 2025-11-21 16:16:05,864 | INFO     | did not find any defunct processes belonging to 1904969
[2025-11-21 18:16:36] 2025-11-21 16:16:05,867 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 18:16:36] 2025-11-21 16:16:05,867 | INFO     | ready for new job
[2025-11-21 18:16:36] 2025-11-21 16:16:05,867 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 18:16:36] 2025-11-21 16:16:05,870 | INFO     | ***************************************
[2025-11-21 18:16:36] 2025-11-21 16:16:05,870 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 18:16:36] 2025-11-21 16:16:05,870 | INFO     | ***************************************
[2025-11-21 18:16:36] 2025-11-21 16:16:05,870 | INFO     | 
[2025-11-21 18:16:36] 2025-11-21 16:16:05,871 | INFO     | architecture information:
[2025-11-21 18:16:36] 2025-11-21 16:16:05,871 | INFO     | executing command: cat /etc/os-release
[2025-11-21 18:16:36] 2025-11-21 16:16:05,899 | INFO     | cat /etc/os-release:
[2025-11-21 18:16:36] NAME="CentOS Linux"
[2025-11-21 18:16:36] VERSION="7 (Core)"
[2025-11-21 18:16:36] ID="centos"
[2025-11-21 18:16:36] ID_LIKE="rhel fedora"
[2025-11-21 18:16:36] VERSION_ID="7"
[2025-11-21 18:16:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 18:16:36] ANSI_COLOR="0;31"
[2025-11-21 18:16:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 18:16:36] HOME_URL="https://www.centos.org/"
[2025-11-21 18:16:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 18:16:36] 
[2025-11-21 18:16:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 18:16:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 18:16:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 18:16:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 18:16:36] 
[2025-11-21 18:16:36] 2025-11-21 16:16:05,900 | INFO     | ***************************************
[2025-11-21 18:16:36] 2025-11-21 16:16:06,402 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-11-21 18:16:36] 2025-11-21 16:16:06,415 | INFO     | sufficient remaining disk space (1762691907584 B)
[2025-11-21 18:16:36] 2025-11-21 16:16:06,415 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 18:16:36] 2025-11-21 16:16:06,415 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 18:16:36] 2025-11-21 16:16:06,415 | INFO     | update_server=False
[2025-11-21 18:16:36] 2025-11-21 16:16:06,415 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 18:16:36] 2025-11-21 16:16:06,415 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 18:16:36] 2025-11-21 16:16:06,576 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:16:36] 2025-11-21 16:16:06,576 | INFO     | aborting loop
[2025-11-21 18:16:36] 2025-11-21 16:16:07,046 | INFO     | all payload control threads have been joined
[2025-11-21 18:16:36] 2025-11-21 16:16:07,146 | INFO     | all job control threads have been joined
[2025-11-21 18:16:36] 2025-11-21 16:16:07,333 | INFO     | [monitor] cgroup control has ended
[2025-11-21 18:16:36] 2025-11-21 16:16:07,413 | INFO     | all data control threads have been joined
[2025-11-21 18:16:36] 2025-11-21 16:16:07,420 | INFO     | [job] retrieve thread has finished
[2025-11-21 18:16:36] 2025-11-21 16:16:07,581 | INFO     | [job] job monitor thread has finished
[2025-11-21 18:16:36] 2025-11-21 16:16:07,660 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 18:16:36] 2025-11-21 16:16:08,042 | INFO     | [data] copytool_in thread has finished
[2025-11-21 18:16:36] 2025-11-21 16:16:08,051 | INFO     | [payload] control thread has finished
[2025-11-21 18:16:36] 2025-11-21 16:16:08,151 | INFO     | [job] control thread has finished
[2025-11-21 18:16:36] 2025-11-21 16:16:08,294 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 18:16:36] 2025-11-21 16:16:08,324 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 18:16:36] 2025-11-21 16:16:08,418 | INFO     | [data] control thread has finished
[2025-11-21 18:16:36] 2025-11-21 16:16:08,421 | INFO     | [data] copytool_out thread has finished
[2025-11-21 18:16:36] 2025-11-21 16:16:08,525 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 18:16:36] 2025-11-21 16:16:08,672 | INFO     | [job] validate thread has finished
[2025-11-21 18:16:36] 2025-11-21 16:16:08,703 | INFO     | [payload] failed_post thread has finished
[2025-11-21 18:16:36] 2025-11-21 16:16:08,742 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 18:16:36] 2025-11-21 16:16:09,016 | INFO     | [payload] validate_post thread has finished
[2025-11-21 18:16:36] 2025-11-21 16:16:09,249 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:16:36] 2025-11-21 16:16:10,254 | INFO     | [job] queue monitor thread has finished
[2025-11-21 18:16:36] 2025-11-21 16:16:12,300 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 18:16:36] 2025-11-21 16:16:12,561 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129584415020864)>', '<ExcThread(monitor, started 129583617648384)>']
[2025-11-21 18:16:36] 2025-11-21 16:16:17,586 | INFO     | all workflow threads have been joined
[2025-11-21 18:16:36] 2025-11-21 16:16:17,586 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 18:16:36] 2025-11-21 16:16:17,586 | INFO     | traces error code: 0
[2025-11-21 18:16:36] 2025-11-21 16:16:17,586 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 18:16:36] 2025-11-21 16:16:37,468 | INFO     | PID=1898256 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 18:16:36] 2025-11-21 16:16:37,468 | INFO     | .. there are 2 such processes running
[2025-11-21 18:16:36] 2025-11-21 16:16:37,468 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 18:16:36] 2025-11-21 16:16:37,468 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 18:16:36] 2025-11-21 16:16:37,469 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 18:16:36] 2025-11-21 16:16:37,469 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 18:16:36] 2025-11-21 16:16:37,469 | INFO     | [monitor] control thread has ended
[2025-11-21 18:16:36] 2025-11-21 16:16:37,643 [wrapper] ==== pilot stdout END ====
[2025-11-21 18:16:36] 2025-11-21 16:16:37,650 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 18:16:36] 2025-11-21 16:16:37,653 [wrapper] pilotpid: 1898256
[2025-11-21 18:16:36] 2025-11-21 16:16:37,655 [wrapper] Pilot exit status: 0
[2025-11-21 18:16:36] 2025-11-21 16:16:37,678 [wrapper] pandaids: 6893851969
[2025-11-21 18:16:36] 2025-11-21 16:16:37,755 [wrapper] cleanup supervisor_pilot 2160174 1898257
[2025-11-21 18:16:36] 2025-11-21 16:16:37,760 [wrapper] Test setup, not cleaning
[2025-11-21 18:16:36] 2025-11-21 16:16:37,773 [wrapper] apfmon messages muted
[2025-11-21 18:16:36] 2025-11-21 16:16:37,780 [wrapper] ==== wrapper stdout END ====
[2025-11-21 18:16:36] 2025-11-21 16:16:37,784 [wrapper] ==== wrapper stderr END ====
[2025-11-21 18:16:36]  *** Error codes and diagnostics ***
[2025-11-21 18:16:36]     "exeErrorCode": 0,
[2025-11-21 18:16:36]     "exeErrorDiag": "",
[2025-11-21 18:16:36]     "pilotErrorCode": 0,
[2025-11-21 18:16:36]     "pilotErrorDiag": "",
[2025-11-21 18:16:36]  *** Listing of results directory ***
[2025-11-21 18:16:36] total 1297660
[2025-11-21 18:16:36] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:09 pilot3.tar.gz
[2025-11-21 18:16:36] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:45 queuedata.json
[2025-11-21 18:16:36] -rwx------ 1 boinc boinc     36292 Nov 20 12:46 runpilot2-wrapper.sh
[2025-11-21 18:16:36] -rw-r--r-- 1 boinc boinc       100 Nov 21 04:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 18:16:36] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 04:04 run_atlas
[2025-11-21 18:16:36] -rw-r--r-- 1 boinc boinc       105 Nov 21 04:04 job.xml
[2025-11-21 18:16:36] -rw-r--r-- 2 boinc boinc 408359380 Nov 21 04:04 EVNT.47493127._000362.pool.root.1
[2025-11-21 18:16:36] -rw-r--r-- 2 boinc boinc     15847 Nov 21 04:04 start_atlas.sh
[2025-11-21 18:16:36] drwxrwx--x 2 boinc boinc      4096 Nov 21 04:04 shared
[2025-11-21 18:16:36] -rw-r--r-- 2 boinc boinc    590102 Nov 21 04:04 input.tar.gz
[2025-11-21 18:16:36] -rw-r--r-- 1 boinc boinc      9568 Nov 21 04:04 init_data.xml
[2025-11-21 18:16:36] -rw-r--r-- 1 boinc boinc         0 Nov 21 04:04 boinc_lockfile
[2025-11-21 18:16:36] -rw-r--r-- 1 boinc boinc      2786 Nov 21 04:04 pandaJob.out
[2025-11-21 18:16:36] -rw------- 1 boinc boinc    989817 Nov 21 04:04 agis_schedconf.cvmfs.json
[2025-11-21 18:16:36] drwx------ 5 boinc boinc      4096 Nov 21 04:04 pilot3
[2025-11-21 18:16:36] -rw-r--r-- 1 boinc boinc       531 Nov 21 17:12 boinc_task_state.xml
[2025-11-21 18:16:36] -rw------- 1 boinc boinc 900303900 Nov 21 17:15 HITS.47523449._003614.pool.root.1
[2025-11-21 18:16:36] -rw------- 1 boinc boinc      1027 Nov 21 17:15 memory_monitor_summary.json
[2025-11-21 18:16:36] -rw------- 1 boinc boinc   1526164 Nov 21 17:15 agis_ddmendpoints.agis.ALL.json
[2025-11-21 18:16:36] -rw------- 1 boinc boinc   1262720 Nov 21 17:15 log.47523449._003614.job.log.tgz.1
[2025-11-21 18:16:36] -rw------- 1 boinc boinc      8575 Nov 21 17:16 heartbeat.json
[2025-11-21 18:16:36] -rw------- 1 boinc boinc       822 Nov 21 17:16 pilotlog.txt
[2025-11-21 18:16:36] -rw------- 1 boinc boinc        95 Nov 21 17:16 pilot_heartbeat.json
[2025-11-21 18:16:36] -rw------- 1 boinc boinc   6843707 Nov 21 17:16 log.47523449._003614.job.log.1
[2025-11-21 18:16:36] -rw------- 1 boinc boinc       353 Nov 21 17:16 output.list
[2025-11-21 18:16:36] -rw-r--r-- 1 boinc boinc       620 Nov 21 17:16 runtime_log
[2025-11-21 18:16:36] -rw------- 1 boinc boinc   8130560 Nov 21 17:16 result.tar.gz
[2025-11-21 18:16:36] -rw------- 1 boinc boinc       665 Nov 21 17:16 vvgNDmSIIg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHZGKDmeVtNvn.diag
[2025-11-21 18:16:36] -rw-r--r-- 1 boinc boinc      8970 Nov 21 17:16 runtime_log.err
[2025-11-21 18:16:36] -rw-r--r-- 1 boinc boinc      8192 Nov 21 18:16 boinc_mmap_file
[2025-11-21 18:16:36] -rw-r--r-- 1 boinc boinc        28 Nov 21 18:16 wrapper_checkpoint.txt
[2025-11-21 18:16:36] -rw-r--r-- 1 boinc boinc     21376 Nov 21 18:16 stderr.txt
[2025-11-21 18:16:36] HITS file was successfully produced:
[2025-11-21 18:16:36] -rw------- 1 boinc boinc 900303900 Nov 21 17:15 shared/HITS.pool.root.1
[2025-11-21 18:16:36]  *** Contents of shared directory: ***
[2025-11-21 18:16:36] total 1286540
[2025-11-21 18:16:36] -rw-r--r-- 2 boinc boinc 408359380 Nov 21 04:04 ATLAS.root_0
[2025-11-21 18:16:36] -rw-r--r-- 2 boinc boinc     15847 Nov 21 04:04 start_atlas.sh
[2025-11-21 18:16:36] -rw-r--r-- 2 boinc boinc    590102 Nov 21 04:04 input.tar.gz
[2025-11-21 18:16:36] -rw------- 1 boinc boinc 900303900 Nov 21 17:15 HITS.pool.root.1
[2025-11-21 18:16:36] -rw------- 1 boinc boinc   8130560 Nov 21 17:16 result.tar.gz
18:16:38 (1894048): run_atlas exited; CPU time 94624.301684
18:16:38 (1894048): called boinc_finish(0)

</stderr_txt>
]]>

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