Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:23:32 (487945): wrapper (7.7.26015): starting
18:23:32 (487945): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 18:23:32] Arguments: --nthreads 12
[2025-11-20 18:23:32] Threads: 12
[2025-11-20 18:23:32] Checking for CVMFS
[2025-11-20 18:23:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 18:23:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 18:23:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 18:23:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 18:23:33] 2.11.5.0 206137 20482 204384 153104 0 574 44715860 45568000 23025 130560 0 217165528 99.765 147284758 26303 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-20 18:23:33] CVMFS is ok
[2025-11-20 18:23:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 18:23:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 18:23:33] Further information can be found at the LHC@home message board.
[2025-11-20 18:23:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 18:23:33] Checking for apptainer binary...
[2025-11-20 18:23:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 18:23:33] Running /usr/bin/apptainer --version
[2025-11-20 18:23:33] apptainer version 1.4.1-1.el9
[2025-11-20 18:23:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 18:23:33] wns0025.triumf.lcg
[2025-11-20 18:23:33] apptainer works
[2025-11-20 18:23:33] Set ATHENA_PROC_NUMBER=12
[2025-11-20 18:23:33] Set ATHENA_CORE_NUMBER=12
[2025-11-20 18:23:33] Starting ATLAS job with PandaID=6893882030
[2025-11-20 18:23:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 18:30:04]  *** The last 200 lines of the pilot log: ***
[2025-11-20 18:30:04] 2025-11-21 02:29:27,624 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 18:30:04] 2025-11-21 02:29:27,624 | WARNING  | wrong length of table data, x=[1763691892.0, 1763691953.0, 1763692014.0], y=[1338.0, 683279.0, 562615.0] (must be same and length>=4)
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | could have reported an average CPU frequency of 2638 MHz (4 samples)
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | ..............................
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . Timing measurements:
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . get job = 0 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . initial setup = 3 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . payload setup = 15 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . stage-in = 0 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . payload execution = 160 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . stage-out = 0 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . log creation = 0 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | ..............................
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 18:30:04] 2025-11-21 02:29:27,626 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893882030/pilotlog.txt
[2025-11-20 18:30:04] 2025-11-21 02:29:27,637 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 18:30:04] - Log from pilotlog.txt -
[2025-11-20 18:30:04] 2025-11-21 02:29:27,623 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893882030/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 18:30:04] 2025-11-21 02:29:27,623 | INFO     | extracted standard info from prmon json
[2025-11-20 18:30:04] 2025-11-21 02:29:27,623 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 18:30:04] 2025-11-21 02:29:27,623 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 18:30:04] 2025-11-21 02:29:27,624 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 18:30:04] 2025-11-21 02:29:27,624 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 18:30:04] 2025-11-21 02:29:27,624 | WARNING  | wrong length of table data, x=[1763691892.0, 1763691953.0, 1763692014.0], y=[1338.0, 683279.0, 562615.0] (must be same and length>=4)
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | could have reported an average CPU frequency of 2638 MHz (4 samples)
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | ..............................
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . Timing measurements:
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . get job = 0 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . initial setup = 3 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . payload setup = 15 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . stage-in = 0 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . payload execution = 160 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . stage-out = 0 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . log creation = 0 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | ..............................
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 18:30:04] 2025-11-21 02:29:27,626 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893882030/pilotlog.txt
[2025-11-20 18:30:04] 2025-11-21 02:29:27,638 | WARNING  | 
[2025-11-20 18:30:04] [begin log extracts]
[2025-11-20 18:30:04] - Log from pilotlog.txt -
[2025-11-20 18:30:04] 2025-11-21 02:29:27,623 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893882030/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 18:30:04] 2025-11-21 02:29:27,623 | INFO     | extracted standard info from prmon json
[2025-11-20 18:30:04] 2025-11-21 02:29:27,623 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 18:30:04] 2025-11-21 02:29:27,623 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 18:30:04] 2025-11-21 02:29:27,624 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 18:30:04] 2025-11-21 02:29:27,624 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 18:30:04] 2025-11-21 02:29:27,624 | WARNING  | wrong length of table data, x=[1763691892.0, 1763691953.0, 1763692014.0], y=[1338.0, 683279.0, 562615.0] (must be same and length>=4)
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | could have reported an average CPU frequency of 2638 MHz (4 samples)
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | ..............................
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . Timing measurements:
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . get job = 0 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . initial setup = 3 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . payload setup = 15 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . stage-in = 0 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . payload execution = 160 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . stage-out = 0 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | . log creation = 0 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | ..............................
[2025-11-20 18:30:04] 2025-11-21 02:29:27,625 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 18:30:04] 2025-11-21 02:29:27,626 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893882030/pilotlog.txt
[2025-11-20 18:30:04] [end log extracts]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,638 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 18:30:04] 2025-11-21 02:29:27,639 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 18:30:04] 2025-11-21 02:29:27,790 | INFO     | 
[2025-11-20 18:30:04] 2025-11-21 02:29:27,790 | INFO     | job summary report
[2025-11-20 18:30:04] 2025-11-21 02:29:27,790 | INFO     | --------------------------------------------------
[2025-11-20 18:30:04] 2025-11-21 02:29:27,790 | INFO     | PanDA job id: 6893882030
[2025-11-20 18:30:04] 2025-11-21 02:29:27,790 | INFO     | task id: 47523449
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 18:27:12,449 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | pilot state: failed 
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | transexitcode: 65
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | exeerrorcode: 65
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | exitcode: 65
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | cpuconsumptiontime: 46 s
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | nevents: 0
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | neventsw: 0
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | pid: 498405
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | pgrp: 498405
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | corecount: 12
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | event service: False
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | sizes: {0: 2298804, 8: 2299066, 11: 2299094, 180: 2324518, 182: 2328864, 307: 2329002}
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | --------------------------------------------------
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | 
[2025-11-20 18:30:04] 2025-11-21 02:29:27,791 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 18:30:04] 2025-11-21 02:29:27,817 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 18:30:04] 2025-11-21 02:29:27,818 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,819 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 18:30:04] 2025-11-21 02:29:27,819 | INFO     | job 6893882030 has completed (purged errors)
[2025-11-20 18:30:04] 2025-11-21 02:29:27,819 | INFO     | overall cleanup function is called
[2025-11-20 18:30:04] 2025-11-21 02:29:28,826 | INFO     | --- collectZombieJob: --- 10, [498405]
[2025-11-20 18:30:04] 2025-11-21 02:29:28,827 | INFO     | zombie collector waiting for pid 498405
[2025-11-20 18:30:04] 2025-11-21 02:29:28,827 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 18:30:04] 2025-11-21 02:29:28,827 | INFO     | collected zombie processes
[2025-11-20 18:30:04] 2025-11-21 02:29:28,827 | INFO     | will attempt to kill all subprocesses of pid=498405
[2025-11-20 18:30:04] 2025-11-21 02:29:29,124 | INFO     | process IDs to be killed: [498405] (in reverse order)
[2025-11-20 18:30:04] 2025-11-21 02:29:29,203 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 18:30:04] 2025-11-21 02:29:29,203 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 18:30:04] 2025-11-21 02:29:29,237 | INFO     | did not find any defunct processes belonging to 498405
[2025-11-20 18:30:04] 2025-11-21 02:29:29,278 | INFO     | did not find any defunct processes belonging to 498405
[2025-11-20 18:30:04] 2025-11-21 02:29:29,279 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 18:30:04] 2025-11-21 02:29:29,279 | INFO     | ready for new job
[2025-11-20 18:30:04] 2025-11-21 02:29:29,280 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 18:30:04] 2025-11-21 02:29:29,281 | INFO     | ***************************************
[2025-11-20 18:30:04] 2025-11-21 02:29:29,281 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 18:30:04] 2025-11-21 02:29:29,281 | INFO     | ***************************************
[2025-11-20 18:30:04] 2025-11-21 02:29:29,281 | INFO     | 
[2025-11-20 18:30:04] 2025-11-21 02:29:29,285 | INFO     | architecture information:
[2025-11-20 18:30:04] 2025-11-21 02:29:29,292 | INFO     | executing command: cat /etc/os-release
[2025-11-20 18:30:04] 2025-11-21 02:29:29,350 | INFO     | cat /etc/os-release:
[2025-11-20 18:30:04] NAME="CentOS Linux"
[2025-11-20 18:30:04] VERSION="7 (Core)"
[2025-11-20 18:30:04] ID="centos"
[2025-11-20 18:30:04] ID_LIKE="rhel fedora"
[2025-11-20 18:30:04] VERSION_ID="7"
[2025-11-20 18:30:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 18:30:04] ANSI_COLOR="0;31"
[2025-11-20 18:30:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 18:30:04] HOME_URL="https://www.centos.org/"
[2025-11-20 18:30:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 18:30:04] 
[2025-11-20 18:30:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 18:30:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 18:30:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 18:30:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 18:30:04] 
[2025-11-20 18:30:04] 2025-11-21 02:29:29,350 | INFO     | ***************************************
[2025-11-20 18:30:04] 2025-11-21 02:29:29,859 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 18:30:04] 2025-11-21 02:29:29,871 | INFO     | sufficient remaining disk space (1726748819456 B)
[2025-11-20 18:30:04] 2025-11-21 02:29:29,871 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 18:30:04] 2025-11-21 02:29:29,871 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 18:30:04] 2025-11-21 02:29:29,871 | INFO     | update_server=False
[2025-11-20 18:30:04] 2025-11-21 02:29:29,872 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 18:30:04] 2025-11-21 02:29:29,872 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 18:30:04] 2025-11-21 02:29:29,872 | INFO     | aborting loop
[2025-11-20 18:30:04] 2025-11-21 02:29:30,314 | INFO     | all payload control threads have been joined
[2025-11-20 18:30:04] 2025-11-21 02:29:30,692 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 18:30:04] 2025-11-21 02:29:30,876 | INFO     | all data control threads have been joined
[2025-11-20 18:30:04] 2025-11-21 02:29:30,878 | INFO     | [job] retrieve thread has finished
[2025-11-20 18:30:04] 2025-11-21 02:29:30,882 | INFO     | [job] job monitor thread has finished
[2025-11-20 18:30:04] 2025-11-21 02:29:30,900 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 18:30:04] 2025-11-21 02:29:31,119 | INFO     | [payload] validate_post thread has finished
[2025-11-20 18:30:04] 2025-11-21 02:29:31,171 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 18:30:04] 2025-11-21 02:29:31,272 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 18:30:04] 2025-11-21 02:29:31,312 | INFO     | all job control threads have been joined
[2025-11-20 18:30:04] 2025-11-21 02:29:31,320 | INFO     | [payload] control thread has finished
[2025-11-20 18:30:04] 2025-11-21 02:29:31,865 | INFO     | [job] validate thread has finished
[2025-11-20 18:30:04] 2025-11-21 02:29:31,882 | INFO     | [data] control thread has finished
[2025-11-20 18:30:04] 2025-11-21 02:29:32,021 | INFO     | [payload] failed_post thread has finished
[2025-11-20 18:30:04] 2025-11-21 02:29:32,053 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 18:30:04] 2025-11-21 02:29:32,257 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 18:30:04] 2025-11-21 02:29:32,306 | INFO     | [data] copytool_in thread has finished
[2025-11-20 18:30:04] 2025-11-21 02:29:32,318 | INFO     | [job] control thread has finished
[2025-11-20 18:30:04] 2025-11-21 02:29:32,713 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 18:30:04] 2025-11-21 02:29:33,279 | INFO     | [data] copytool_out thread has finished
[2025-11-20 18:30:04] 2025-11-21 02:29:33,718 | INFO     | [job] queue monitor thread has finished
[2025-11-20 18:30:04] 2025-11-21 02:29:34,706 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 18:30:04] 2025-11-21 02:29:57,863 | INFO     | [monitor] cgroup control has ended
[2025-11-20 18:30:04] 2025-11-21 02:29:58,393 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140219965073216)>', '<ExcThread(monitor, started 140219063985920)>']
[2025-11-20 18:30:04] 2025-11-21 02:30:00,744 | INFO     | PID=491699 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 18:30:04] 2025-11-21 02:30:00,745 | INFO     | .. there are 34 such processes running
[2025-11-20 18:30:04] 2025-11-21 02:30:00,745 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 18:30:04] 2025-11-21 02:30:00,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 18:30:04] 2025-11-21 02:30:00,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 18:30:04] 2025-11-21 02:30:00,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 18:30:04] 2025-11-21 02:30:00,746 | INFO     | [monitor] control thread has ended
[2025-11-20 18:30:04] 2025-11-21 02:30:03,419 | INFO     | all workflow threads have been joined
[2025-11-20 18:30:04] 2025-11-21 02:30:03,420 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 18:30:04] 2025-11-21 02:30:03,420 | INFO     | traces error code: 0
[2025-11-20 18:30:04] 2025-11-21 02:30:03,420 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 18:30:04] 2025-11-21 02:30:03,881 [wrapper] ==== pilot stdout END ====
[2025-11-20 18:30:04] 2025-11-21 02:30:03,890 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 18:30:04] 2025-11-21 02:30:03,910 [wrapper] pilotpid: 491699
[2025-11-20 18:30:04] 2025-11-21 02:30:03,916 [wrapper] Pilot exit status: 0
[2025-11-20 18:30:04] 2025-11-21 02:30:03,930 [wrapper] pandaids: 6893882030
[2025-11-20 18:30:04] 2025-11-21 02:30:03,985 [wrapper] cleanup supervisor_pilot  491705 491700
[2025-11-20 18:30:04] 2025-11-21 02:30:03,988 [wrapper] Test setup, not cleaning
[2025-11-20 18:30:04] 2025-11-21 02:30:03,990 [wrapper] apfmon messages muted
[2025-11-20 18:30:04] 2025-11-21 02:30:03,992 [wrapper] ==== wrapper stdout END ====
[2025-11-20 18:30:04] 2025-11-21 02:30:03,994 [wrapper] ==== wrapper stderr END ====
[2025-11-20 18:30:04]  *** Error codes and diagnostics ***
[2025-11-20 18:30:04]     "exeErrorCode": 65,
[2025-11-20 18:30:04]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 18:30:04]     "pilotErrorCode": 1305,
[2025-11-20 18:30:04]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 18:30:04]  *** Listing of results directory ***
[2025-11-20 18:30:04] total 404124
[2025-11-20 18:30:04] -rw-r--r--. 1 boinc boinc    576529 Nov 20 12:07 pilot3.tar.gz
[2025-11-20 18:30:04] -rwx------. 1 boinc boinc     36292 Nov 20 12:37 runpilot2-wrapper.sh
[2025-11-20 18:30:04] -rw-r--r--. 1 boinc boinc      5112 Nov 20 12:37 queuedata.json
[2025-11-20 18:30:04] -rw-r--r--. 1 boinc boinc       100 Nov 20 18:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 18:30:04] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 18:23 run_atlas
[2025-11-20 18:30:04] -rw-r--r--. 1 boinc boinc       105 Nov 20 18:23 job.xml
[2025-11-20 18:30:04] -rw-r--r--. 1 boinc boinc      6594 Nov 20 18:23 init_data.xml
[2025-11-20 18:30:04] -rw-r--r--. 2 boinc boinc 409581291 Nov 20 18:23 EVNT.47493127._000888.pool.root.1
[2025-11-20 18:30:04] drwxrwx--x. 2 boinc boinc      4096 Nov 20 18:23 shared
[2025-11-20 18:30:04] -rw-r--r--. 2 boinc boinc    590096 Nov 20 18:23 input.tar.gz
[2025-11-20 18:30:04] -rw-r--r--. 2 boinc boinc     15847 Nov 20 18:23 start_atlas.sh
[2025-11-20 18:30:04] -rw-r--r--. 1 boinc boinc         0 Nov 20 18:23 boinc_lockfile
[2025-11-20 18:30:04] -rw-r--r--. 1 boinc boinc      2786 Nov 20 18:23 pandaJob.out
[2025-11-20 18:30:04] -rw-------. 1 boinc boinc    989817 Nov 20 18:23 agis_schedconf.cvmfs.json
[2025-11-20 18:30:04] -rw-------. 1 boinc boinc   1526164 Nov 20 18:23 agis_ddmendpoints.agis.ALL.json
[2025-11-20 18:30:04] drwx------. 5 boinc boinc      4096 Nov 20 18:23 pilot3
[2025-11-20 18:30:04] -rw-r--r--. 1 boinc boinc       524 Nov 20 18:26 boinc_task_state.xml
[2025-11-20 18:30:04] -rw-------. 1 boinc boinc      1020 Nov 20 18:27 memory_monitor_summary.json
[2025-11-20 18:30:04] -rw-------. 1 boinc boinc     50137 Nov 20 18:27 log.47523449._008878.job.log.tgz.1
[2025-11-20 18:30:04] -rw-------. 1 boinc boinc     10340 Nov 20 18:29 heartbeat.json
[2025-11-20 18:30:04] -rw-r--r--. 1 boinc boinc      8192 Nov 20 18:29 boinc_mmap_file
[2025-11-20 18:30:04] -rw-r--r--. 1 boinc boinc        23 Nov 20 18:30 wrapper_checkpoint.txt
[2025-11-20 18:30:04] -rw-------. 1 boinc boinc        95 Nov 20 18:30 pilot_heartbeat.json
[2025-11-20 18:30:04] -rw-------. 1 boinc boinc      4822 Nov 20 18:30 pilotlog.txt
[2025-11-20 18:30:04] -rw-------. 1 boinc boinc    108065 Nov 20 18:30 log.47523449._008878.job.log.1
[2025-11-20 18:30:04] -rw-------. 1 boinc boinc       186 Nov 20 18:30 output.list
[2025-11-20 18:30:04] -rw-r--r--. 1 boinc boinc       620 Nov 20 18:30 runtime_log
[2025-11-20 18:30:04] -rw-------. 1 boinc boinc    184320 Nov 20 18:30 result.tar.gz
[2025-11-20 18:30:04] -rw-r--r--. 1 boinc boinc      8636 Nov 20 18:30 runtime_log.err
[2025-11-20 18:30:04] -rw-------. 1 boinc boinc       645 Nov 20 18:30 cZjNDmoaQg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgWIKDm9HoTxm.diag
[2025-11-20 18:30:04] -rw-r--r--. 1 boinc boinc     22520 Nov 20 18:30 stderr.txt
[2025-11-20 18:30:04] No HITS result produced
[2025-11-20 18:30:04]  *** Contents of shared directory: ***
[2025-11-20 18:30:04] total 400764
[2025-11-20 18:30:04] -rw-r--r--. 2 boinc boinc 409581291 Nov 20 18:23 ATLAS.root_0
[2025-11-20 18:30:04] -rw-r--r--. 2 boinc boinc    590096 Nov 20 18:23 input.tar.gz
[2025-11-20 18:30:04] -rw-r--r--. 2 boinc boinc     15847 Nov 20 18:23 start_atlas.sh
[2025-11-20 18:30:04] -rw-------. 1 boinc boinc    184320 Nov 20 18:30 result.tar.gz
18:30:05 (487945): run_atlas exited; CPU time 49.078721
18:30:05 (487945): called boinc_finish(0)

</stderr_txt>
]]>

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