Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:54:47 (28996): wrapper (7.7.26015): starting
00:54:47 (28996): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 00:54:47] Arguments: --nthreads 8
[2025-11-24 00:54:47] Threads: 8
[2025-11-24 00:54:47] Checking for CVMFS
[2025-11-24 00:54:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:54:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:54:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:54:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:54:49] 2.11.2.0 9336 78810 89448 153226 3 85 17037176 25165825 4632 130560 2 23412445 99.884 13546330 1926 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 00:54:49] CVMFS is ok
[2025-11-24 00:54:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:54:49] Checking for apptainer binary...
[2025-11-24 00:54:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:54:49] Running /usr/bin/apptainer --version
[2025-11-24 00:54:50] apptainer version 1.3.2-1.el7
[2025-11-24 00:54:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:54:56] cg-vwn413.simple-grid.lan
[2025-11-24 00:54:56] apptainer works
[2025-11-24 00:54:56] Set ATHENA_PROC_NUMBER=8
[2025-11-24 00:54:56] Set ATHENA_CORE_NUMBER=8
[2025-11-24 00:54:56] Starting ATLAS job with PandaID=6893860086
[2025-11-24 00:54:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 22:48:33]  *** The last 200 lines of the pilot log: ***
[2025-11-24 22:48:34] 2025-11-24 21:47:47,980 | INFO     | time since job start (78539s) is within the limit (172800.0s)
[2025-11-24 22:48:34] 2025-11-24 21:47:48,125 | INFO     | monitor loop #5247: job 0:6893860086 is in state 'finished'
[2025-11-24 22:48:34] 2025-11-24 21:47:48,126 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:48:34] 2025-11-24 21:47:49,987 | INFO     | time since job start (78541s) is within the limit (172800.0s)
[2025-11-24 22:48:34] 2025-11-24 21:47:50,630 | INFO     | monitor loop #5248: job 0:6893860086 is in state 'finished'
[2025-11-24 22:48:34] 2025-11-24 21:47:50,631 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:48:34] 2025-11-24 21:47:51,232 | INFO     | PID=355 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-11-24 22:48:34] 2025-11-24 21:47:51,233 | INFO     | .. there are 9 such processes running
[2025-11-24 22:48:34] 2025-11-24 21:47:52,233 | INFO     | time since job start (78544s) is within the limit (172800.0s)
[2025-11-24 22:48:34] 2025-11-24 21:47:52,234 | INFO     | 78555s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-24 22:48:34] 2025-11-24 21:47:53,139 | INFO     | monitor loop #5249: job 0:6893860086 is in state 'finished'
[2025-11-24 22:48:34] 2025-11-24 21:47:53,140 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:48:34] 2025-11-24 21:47:54,241 | INFO     | time since job start (78546s) is within the limit (172800.0s)
[2025-11-24 22:48:34] 2025-11-24 21:47:55,644 | INFO     | monitor loop #5250: job 0:6893860086 is in state 'finished'
[2025-11-24 22:48:34] 2025-11-24 21:47:55,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:48:34] 2025-11-24 21:47:56,248 | INFO     | time since job start (78548s) is within the limit (172800.0s)
[2025-11-24 22:48:34] 2025-11-24 21:47:56,966 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 22:48:34] 2025-11-24 21:47:56,967 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 22:48:34] 2025-11-24 21:47:56,969 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6893860086/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 22:48:34] 2025-11-24 21:47:56,970 | INFO     | extracted standard info from prmon json
[2025-11-24 22:48:34] 2025-11-24 21:47:56,970 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 22:48:34] 2025-11-24 21:47:56,970 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 22:48:34] 2025-11-24 21:47:57,004 | INFO     | fitting pss+swap vs Time
[2025-11-24 22:48:34] 2025-11-24 21:47:57,006 | INFO     | sum of square deviations: 647245921130.7324
[2025-11-24 22:48:34] 2025-11-24 21:47:57,073 | INFO     | sum of deviations: 3434156944192.0454
[2025-11-24 22:48:34] 2025-11-24 21:47:57,073 | INFO     | mean x: 1763981779.5727699
[2025-11-24 22:48:34] 2025-11-24 21:47:57,073 | INFO     | mean y: 2817158.730829421
[2025-11-24 22:48:34] 2025-11-24 21:47:57,074 | INFO     | intersect: -9356516102.365923
[2025-11-24 22:48:34] 2025-11-24 21:47:57,075 | INFO     | chi2: 30.817843084925485
[2025-11-24 22:48:34] 2025-11-24 21:47:57,077 | INFO     | sum of square deviations: 639679211352.457
[2025-11-24 22:48:34] 2025-11-24 21:47:57,135 | INFO     | sum of deviations: 3854040781262.45
[2025-11-24 22:48:34] 2025-11-24 21:47:57,135 | INFO     | mean x: 1763981627.0769835
[2025-11-24 22:48:34] 2025-11-24 21:47:57,135 | INFO     | mean y: 2825620.097407698
[2025-11-24 22:48:34] 2025-11-24 21:47:57,135 | INFO     | intersect: -10625090697.17447
[2025-11-24 22:48:34] 2025-11-24 21:47:57,137 | INFO     | chi2: 27.58643886444033
[2025-11-24 22:48:34] 2025-11-24 21:47:57,137 | INFO     | current chi2=27.58643886444033 (change=10.485497676071285 %)
[2025-11-24 22:48:34] 2025-11-24 21:47:57,137 | INFO     | right removable region: 1272
[2025-11-24 22:48:34] 2025-11-24 21:47:57,143 | INFO     | sum of square deviations: 639678375042.4568
[2025-11-24 22:48:34] 2025-11-24 21:47:57,219 | INFO     | sum of deviations: 2886815953517.384
[2025-11-24 22:48:34] 2025-11-24 21:47:57,219 | INFO     | mean x: 1763981932.0769835
[2025-11-24 22:48:34] 2025-11-24 21:47:57,219 | INFO     | mean y: 2828188.9552238807
[2025-11-24 22:48:34] 2025-11-24 21:47:57,219 | INFO     | intersect: -7957877349.821616
[2025-11-24 22:48:34] 2025-11-24 21:47:57,221 | INFO     | chi2: 25.662866430261978
[2025-11-24 22:48:34] 2025-11-24 21:47:57,221 | INFO     | current chi2=25.662866430261978 (change=16.72724674617173 %)
[2025-11-24 22:48:34] 2025-11-24 21:47:57,221 | INFO     | left removable region: 10
[2025-11-24 22:48:34] 2025-11-24 21:47:57,223 | INFO     | sum of square deviations: 623238870424.0856
[2025-11-24 22:48:34] 2025-11-24 21:47:57,302 | INFO     | sum of deviations: 2894508277586.7373
[2025-11-24 22:48:34] 2025-11-24 21:47:57,302 | INFO     | mean x: 1763981901.586371
[2025-11-24 22:48:34] 2025-11-24 21:47:57,303 | INFO     | mean y: 2848978.263866878
[2025-11-24 22:48:34] 2025-11-24 21:47:57,303 | INFO     | intersect: -8189612143.714355
[2025-11-24 22:48:34] 2025-11-24 21:47:57,304 | INFO     | chi2: 17.33072214028057
[2025-11-24 22:48:34] 2025-11-24 21:47:57,305 | INFO     | current memory leak: 4.64 B/s (using 1262 data points, chi2=17.33)
[2025-11-24 22:48:34] 2025-11-24 21:47:57,306 | INFO     | could have reported an average CPU frequency of 1999 MHz (43 samples)
[2025-11-24 22:48:34] 2025-11-24 21:47:57,306 | INFO     | ..............................
[2025-11-24 22:48:34] 2025-11-24 21:47:57,307 | INFO     | . Timing measurements:
[2025-11-24 22:48:34] 2025-11-24 21:47:57,307 | INFO     | . get job = 0 s
[2025-11-24 22:48:34] 2025-11-24 21:47:57,307 | INFO     | . initial setup = 10 s
[2025-11-24 22:48:34] 2025-11-24 21:47:57,307 | INFO     | . payload setup = 150 s
[2025-11-24 22:48:34] 2025-11-24 21:47:57,307 | INFO     | . stage-in = 0 s
[2025-11-24 22:48:34] 2025-11-24 21:47:57,307 | INFO     | . payload execution = 78102 s
[2025-11-24 22:48:34] 2025-11-24 21:47:57,307 | INFO     | . stage-out = 3 s
[2025-11-24 22:48:34] 2025-11-24 21:47:57,307 | INFO     | . log creation = 1 s
[2025-11-24 22:48:34] 2025-11-24 21:47:57,307 | INFO     | ..............................
[2025-11-24 22:48:34] 2025-11-24 21:47:57,452 | INFO     | 
[2025-11-24 22:48:34] 2025-11-24 21:47:57,453 | INFO     | job summary report
[2025-11-24 22:48:34] 2025-11-24 21:47:57,453 | INFO     | --------------------------------------------------
[2025-11-24 22:48:34] 2025-11-24 21:47:57,453 | INFO     | PanDA job id: 6893860086
[2025-11-24 22:48:34] 2025-11-24 21:47:57,453 | INFO     | task id: 47523449
[2025-11-24 22:48:34] 2025-11-24 21:47:57,453 | INFO     | errors: (none)
[2025-11-24 22:48:34] 2025-11-24 21:47:57,453 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 22:48:34] 2025-11-24 21:47:57,453 | INFO     | pilot state: finished 
[2025-11-24 22:48:34] 2025-11-24 21:47:57,453 | INFO     | transexitcode: 0
[2025-11-24 22:48:34] 2025-11-24 21:47:57,453 | INFO     | exeerrorcode: 0
[2025-11-24 22:48:34] 2025-11-24 21:47:57,453 | INFO     | exeerrordiag: 
[2025-11-24 22:48:34] 2025-11-24 21:47:57,453 | INFO     | exitcode: 0
[2025-11-24 22:48:34] 2025-11-24 21:47:57,454 | INFO     | exitmsg: OK
[2025-11-24 22:48:34] 2025-11-24 21:47:57,454 | INFO     | cpuconsumptiontime: 342583 s
[2025-11-24 22:48:34] 2025-11-24 21:47:57,454 | INFO     | nevents: 1000
[2025-11-24 22:48:34] 2025-11-24 21:47:57,454 | INFO     | neventsw: 0
[2025-11-24 22:48:34] 2025-11-24 21:47:57,454 | INFO     | pid: 7027
[2025-11-24 22:48:34] 2025-11-24 21:47:57,454 | INFO     | pgrp: 7027
[2025-11-24 22:48:34] 2025-11-24 21:47:57,454 | INFO     | corecount: 8
[2025-11-24 22:48:34] 2025-11-24 21:47:57,454 | INFO     | event service: False
[2025-11-24 22:48:34] 2025-11-24 21:47:57,454 | INFO     | sizes: {0: 2297978, 1: 2298664, 2: 2298863, 3: 2298863, 13: 2298891, 24: 2298947, 35: 2299103, 46: 2299131, 56: 2299159, 67: 2299187, 78: 2299215, 89: 2299551, 97:
[2025-11-24 22:48:34] 2025-11-24 21:47:57,454 | INFO     | --------------------------------------------------
[2025-11-24 22:48:34] 2025-11-24 21:47:57,454 | INFO     | 
[2025-11-24 22:48:34] 2025-11-24 21:47:57,455 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-11-24 22:48:34] 2025-11-24 21:47:57,938 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,938 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,938 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,939 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,939 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,939 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,939 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,939 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,939 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,939 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,940 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,940 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,940 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,940 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 22:48:34] 2025-11-24 21:47:57,940 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,940 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 22:48:34] 2025-11-24 21:47:57,940 | INFO     | job 6893860086 has completed (purged errors)
[2025-11-24 22:48:34] 2025-11-24 21:47:57,940 | INFO     | overall cleanup function is called
[2025-11-24 22:48:34] 2025-11-24 21:47:58,960 | INFO     | --- collectZombieJob: --- 10, [7027]
[2025-11-24 22:48:34] 2025-11-24 21:47:58,961 | INFO     | zombie collector waiting for pid 7027
[2025-11-24 22:48:34] 2025-11-24 21:47:58,961 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 22:48:34] 2025-11-24 21:47:58,961 | INFO     | collected zombie processes
[2025-11-24 22:48:34] 2025-11-24 21:47:58,961 | INFO     | will attempt to kill all subprocesses of pid=7027
[2025-11-24 22:48:34] 2025-11-24 21:47:59,119 | INFO     | process IDs to be killed: [7027] (in reverse order)
[2025-11-24 22:48:34] 2025-11-24 21:47:59,798 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 22:48:34] 2025-11-24 21:47:59,799 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 22:48:34] 2025-11-24 21:47:59,802 | INFO     | did not find any defunct processes belonging to 7027
[2025-11-24 22:48:34] 2025-11-24 21:47:59,806 | INFO     | did not find any defunct processes belonging to 7027
[2025-11-24 22:48:34] 2025-11-24 21:47:59,847 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 22:48:34] 2025-11-24 21:47:59,847 | INFO     | ready for new job
[2025-11-24 22:48:34] 2025-11-24 21:47:59,847 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 22:48:34] 2025-11-24 21:47:59,852 | INFO     | ***************************************
[2025-11-24 22:48:34] 2025-11-24 21:47:59,853 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 22:48:34] 2025-11-24 21:47:59,853 | INFO     | ***************************************
[2025-11-24 22:48:34] 2025-11-24 21:47:59,853 | INFO     | 
[2025-11-24 22:48:34] 2025-11-24 21:47:59,854 | INFO     | pilot is running in a VM
[2025-11-24 22:48:34] 2025-11-24 21:47:59,854 | INFO     | architecture information:
[2025-11-24 22:48:34] 2025-11-24 21:47:59,862 | INFO     | executing command: cat /etc/os-release
[2025-11-24 22:48:34] 2025-11-24 21:48:00,128 | INFO     | cat /etc/os-release:
[2025-11-24 22:48:34] NAME="CentOS Linux"
[2025-11-24 22:48:34] VERSION="7 (Core)"
[2025-11-24 22:48:34] ID="centos"
[2025-11-24 22:48:34] ID_LIKE="rhel fedora"
[2025-11-24 22:48:34] VERSION_ID="7"
[2025-11-24 22:48:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 22:48:34] ANSI_COLOR="0;31"
[2025-11-24 22:48:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 22:48:34] HOME_URL="https://www.centos.org/"
[2025-11-24 22:48:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 22:48:34] 
[2025-11-24 22:48:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 22:48:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 22:48:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 22:48:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 22:48:34] 
[2025-11-24 22:48:34] 2025-11-24 21:48:00,128 | INFO     | ***************************************
[2025-11-24 22:48:34] 2025-11-24 21:48:00,632 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-11-24 22:48:34] 2025-11-24 21:48:00,896 | INFO     | sufficient remaining disk space (494855520256 B)
[2025-11-24 22:48:34] 2025-11-24 21:48:00,897 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 22:48:34] 2025-11-24 21:48:00,897 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 22:48:34] 2025-11-24 21:48:00,897 | INFO     | update_server=False
[2025-11-24 22:48:34] 2025-11-24 21:48:00,897 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 22:48:34] 2025-11-24 21:48:01,107 | INFO     | all data control threads have been joined
[2025-11-24 22:48:34] 2025-11-24 21:48:01,576 | INFO     | all job control threads have been joined
[2025-11-24 22:48:34] 2025-11-24 21:48:01,644 | INFO     | all payload control threads have been joined
[2025-11-24 22:48:34] 2025-11-24 21:48:01,666 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:48:34] 2025-11-24 21:48:01,667 | INFO     | aborting loop
[2025-11-24 22:48:34] 2025-11-24 21:48:01,819 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 22:48:34] 2025-11-24 21:48:01,904 | INFO     | [job] retrieve thread has finished
[2025-11-24 22:48:34] 2025-11-24 21:48:02,106 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 22:48:34] 2025-11-24 21:48:02,113 | INFO     | [data] control thread has finished
[2025-11-24 22:48:34] 2025-11-24 21:48:02,117 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 22:48:34] 2025-11-24 21:48:02,377 | INFO     | [payload] validate_post thread has finished
[2025-11-24 22:48:34] 2025-11-24 21:48:02,459 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:48:34] 2025-11-24 21:48:02,546 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 22:48:34] 2025-11-24 21:48:02,582 | INFO     | [job] control thread has finished
[2025-11-24 22:48:34] 2025-11-24 21:48:02,650 | INFO     | [payload] control thread has finished
[2025-11-24 22:48:34] 2025-11-24 21:48:02,672 | INFO     | [job] job monitor thread has finished
[2025-11-24 22:48:34] 2025-11-24 21:48:02,714 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 22:48:34] 2025-11-24 21:48:02,737 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 22:48:34] 2025-11-24 21:48:03,206 | INFO     | [data] copytool_in thread has finished
[2025-11-24 22:48:34] 2025-11-24 21:48:03,318 | INFO     | [job] validate thread has finished
[2025-11-24 22:48:34] 2025-11-24 21:48:03,403 | INFO     | [monitor] cgroup control has ended
[2025-11-24 22:48:34] 2025-11-24 21:48:03,428 | INFO     | [payload] failed_post thread has finished
[2025-11-24 22:48:34] 2025-11-24 21:48:03,465 | INFO     | [job] queue monitor thread has finished
[2025-11-24 22:48:34] 2025-11-24 21:48:03,826 | INFO     | [data] copytool_out thread has finished
[2025-11-24 22:48:34] 2025-11-24 21:48:06,747 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 22:48:34] 2025-11-24 21:48:07,929 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140683032975168)>', '<ExcThread(monitor, started 140682450691840)>']
[2025-11-24 22:48:34] 2025-11-24 21:48:12,955 | INFO     | all workflow threads have been joined
[2025-11-24 22:48:34] 2025-11-24 21:48:12,956 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 22:48:34] 2025-11-24 21:48:12,956 | INFO     | traces error code: 0
[2025-11-24 22:48:34] 2025-11-24 21:48:12,956 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 22:48:34] 2025-11-24 21:48:29,488 | INFO     | PID=355 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-11-24 22:48:34] 2025-11-24 21:48:29,489 | INFO     | .. there are 9 such processes running
[2025-11-24 22:48:34] 2025-11-24 21:48:29,489 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 22:48:34] 2025-11-24 21:48:29,489 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 22:48:34] 2025-11-24 21:48:29,489 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 22:48:34] 2025-11-24 21:48:29,489 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 22:48:34] 2025-11-24 21:48:29,489 | INFO     | [monitor] control thread has ended
[2025-11-24 22:48:34] 2025-11-24 21:48:29,974 [wrapper] ==== pilot stdout END ====
[2025-11-24 22:48:34] 2025-11-24 21:48:30,084 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 22:48:34] 2025-11-24 21:48:30,128 [wrapper] pilotpid: 355
[2025-11-24 22:48:34] 2025-11-24 21:48:30,166 [wrapper] Pilot exit status: 0
[2025-11-24 22:48:34] 2025-11-24 21:48:30,423 [wrapper] pandaids: 6893860086
[2025-11-24 22:48:34] 2025-11-24 21:48:31,397 [wrapper] cleanup supervisor_pilot 20798 356
[2025-11-24 22:48:34] 2025-11-24 21:48:31,487 [wrapper] Test setup, not cleaning
[2025-11-24 22:48:34] 2025-11-24 21:48:31,538 [wrapper] apfmon messages muted
[2025-11-24 22:48:34] 2025-11-24 21:48:31,632 [wrapper] ==== wrapper stdout END ====
[2025-11-24 22:48:34] 2025-11-24 21:48:31,714 [wrapper] ==== wrapper stderr END ====
[2025-11-24 22:48:34]  *** Error codes and diagnostics ***
[2025-11-24 22:48:34]     "exeErrorCode": 0,
[2025-11-24 22:48:34]     "exeErrorDiag": "",
[2025-11-24 22:48:34]     "pilotErrorCode": 0,
[2025-11-24 22:48:34]     "pilotErrorDiag": "",
[2025-11-24 22:48:34]  *** Listing of results directory ***
[2025-11-24 22:48:34] total 1335824
[2025-11-24 22:48:34] -rw-r--r--. 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-24 22:48:34] -rw-r--r--. 1 boinc boinc      5112 Nov 20 14:37 queuedata.json
[2025-11-24 22:48:34] -rwx------. 1 boinc boinc     36292 Nov 20 14:39 runpilot2-wrapper.sh
[2025-11-24 22:48:34] -rw-r--r--. 1 boinc boinc       100 Nov 24 00:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 22:48:34] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 00:54 run_atlas
[2025-11-24 22:48:34] -rw-r--r--. 1 boinc boinc       105 Nov 24 00:54 job.xml
[2025-11-24 22:48:34] -rw-r--r--. 2 boinc boinc 409631899 Nov 24 00:54 EVNT.47493127._000543.pool.root.1
[2025-11-24 22:48:34] -rw-r--r--. 1 boinc boinc      6393 Nov 24 00:54 init_data.xml
[2025-11-24 22:48:34] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:54 start_atlas.sh
[2025-11-24 22:48:34] drwxrwx--x. 2 boinc boinc        68 Nov 24 00:54 shared
[2025-11-24 22:48:34] -rw-r--r--. 2 boinc boinc    590102 Nov 24 00:54 input.tar.gz
[2025-11-24 22:48:34] -rw-r--r--. 1 boinc boinc         0 Nov 24 00:54 boinc_lockfile
[2025-11-24 22:48:34] -rw-r--r--. 1 boinc boinc      2785 Nov 24 00:54 pandaJob.out
[2025-11-24 22:48:34] -rw-------. 1 boinc boinc    989786 Nov 24 00:58 agis_schedconf.cvmfs.json
[2025-11-24 22:48:34] drwx------. 5 boinc boinc      4096 Nov 24 00:58 pilot3
[2025-11-24 22:48:34] -rw-r--r--. 1 boinc boinc       533 Nov 24 22:23 boinc_task_state.xml
[2025-11-24 22:48:34] -rw-------. 1 boinc boinc 928708512 Nov 24 22:45 HITS.47523449._005425.pool.root.1
[2025-11-24 22:48:34] -rw-------. 1 boinc boinc      1032 Nov 24 22:46 memory_monitor_summary.json
[2025-11-24 22:48:34] -rw-------. 1 boinc boinc   1516227 Nov 24 22:46 agis_ddmendpoints.agis.ALL.json
[2025-11-24 22:48:34] -rw-------. 1 boinc boinc   2401680 Nov 24 22:46 log.47523449._005425.job.log.tgz.1
[2025-11-24 22:48:34] -rw-------. 1 boinc boinc        95 Nov 24 22:47 pilot_heartbeat.json
[2025-11-24 22:48:34] -rw-------. 1 boinc boinc      8632 Nov 24 22:47 heartbeat.json
[2025-11-24 22:48:34] -rw-------. 1 boinc boinc       818 Nov 24 22:48 pilotlog.txt
[2025-11-24 22:48:34] -rw-r--r--. 1 boinc boinc      8192 Nov 24 22:48 boinc_mmap_file
[2025-11-24 22:48:34] -rw-------. 1 boinc boinc  10423804 Nov 24 22:48 log.47523449._005425.job.log.1
[2025-11-24 22:48:34] -rw-r--r--. 1 boinc boinc        29 Nov 24 22:48 wrapper_checkpoint.txt
[2025-11-24 22:48:34] -rw-------. 1 boinc boinc       353 Nov 24 22:48 output.list
[2025-11-24 22:48:34] -rw-r--r--. 1 boinc boinc       620 Nov 24 22:48 runtime_log
[2025-11-24 22:48:34] -rw-------. 1 boinc boinc  12840960 Nov 24 22:48 result.tar.gz
[2025-11-24 22:48:34] -rw-r--r--. 1 boinc boinc      8833 Nov 24 22:48 runtime_log.err
[2025-11-24 22:48:34] -rw-------. 1 boinc boinc       662 Nov 24 22:48 58lLDmR3Jg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTyHKDmVHjG1n.diag
[2025-11-24 22:48:34] -rw-r--r--. 1 boinc boinc     21505 Nov 24 22:48 stderr.txt
[2025-11-24 22:48:34] HITS file was successfully produced:
[2025-11-24 22:48:34] -rw-------. 1 boinc boinc 928708512 Nov 24 22:45 shared/HITS.pool.root.1
[2025-11-24 22:48:34]  *** Contents of shared directory: ***
[2025-11-24 22:48:34] total 1320112
[2025-11-24 22:48:34] -rw-r--r--. 2 boinc boinc 409631899 Nov 24 00:54 ATLAS.root_0
[2025-11-24 22:48:34] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:54 start_atlas.sh
[2025-11-24 22:48:34] -rw-r--r--. 2 boinc boinc    590102 Nov 24 00:54 input.tar.gz
[2025-11-24 22:48:34] -rw-------. 1 boinc boinc 928708512 Nov 24 22:45 HITS.pool.root.1
[2025-11-24 22:48:34] -rw-------. 1 boinc boinc  12840960 Nov 24 22:48 result.tar.gz
22:48:35 (28996): run_atlas exited; CPU time 343012.192582
22:48:35 (28996): called boinc_finish(0)

</stderr_txt>
]]>

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