Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:54:00 (2017987): wrapper (7.7.26015): starting
20:54:00 (2017987): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 20:54:00] Arguments: --nthreads 3
[2025-11-20 20:54:00] Threads: 3
[2025-11-20 20:54:00] Checking for CVMFS
[2025-11-20 20:54:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 20:54:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 20:54:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 20:54:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 20:54:01] 2.9.2.0 16720 420 67920 153088 3 88 34405804 36864000 0 130560 0 6013641 99.999 9602 8611 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 20:54:01] CVMFS is ok
[2025-11-20 20:54:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 20:54:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 20:54:01] Further information can be found at the LHC@home message board.
[2025-11-20 20:54:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 20:54:01] Checking for apptainer binary...
[2025-11-20 20:54:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 20:54:01] Running /usr/bin/apptainer --version
[2025-11-20 20:54:01] apptainer version 1.4.1-1.1
[2025-11-20 20:54:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 20:54:01] thA335
[2025-11-20 20:54:01] apptainer works
[2025-11-20 20:54:01] Set ATHENA_PROC_NUMBER=3
[2025-11-20 20:54:01] Set ATHENA_CORE_NUMBER=3
[2025-11-20 20:54:01] Starting ATLAS job with PandaID=6893852462
[2025-11-20 20:54:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 20:58:19]  *** The last 200 lines of the pilot log: ***
[2025-11-20 20:58:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 20:58:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 20:58:19] 
[2025-11-20 20:58:19] 2025-11-20 19:57:25,799 | INFO     | ***************************************
[2025-11-20 20:58:19] 2025-11-20 19:57:26,302 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 20:58:19] 2025-11-20 19:57:26,316 | INFO     | sufficient remaining disk space (827642085376 B)
[2025-11-20 20:58:19] 2025-11-20 19:57:26,316 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 20:58:19] 2025-11-20 19:57:26,316 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 20:58:19] 2025-11-20 19:57:26,316 | INFO     | update_server=False
[2025-11-20 20:58:19] 2025-11-20 19:57:26,316 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 20:58:19] 2025-11-20 19:57:26,316 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 20:58:19] 2025-11-20 19:57:26,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:58:19] 2025-11-20 19:57:26,317 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 20:58:19] 2025-11-20 19:57:26,320 | INFO     | all data control threads have been joined
[2025-11-20 20:58:19] 2025-11-20 19:57:26,719 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:58:19] 2025-11-20 19:57:26,719 | INFO     | aborting loop
[2025-11-20 20:58:19] 2025-11-20 19:57:27,322 | INFO     | [job] retrieve thread has finished
[2025-11-20 20:58:19] 2025-11-20 19:57:27,323 | INFO     | [job] queue monitor thread has finished
[2025-11-20 20:58:19] 2025-11-20 19:57:27,326 | INFO     | [data] control thread has finished
[2025-11-20 20:58:19] 2025-11-20 19:57:27,358 | INFO     | all payload control threads have been joined
[2025-11-20 20:58:19] 2025-11-20 19:57:27,681 | INFO     | all job control threads have been joined
[2025-11-20 20:58:19] 2025-11-20 19:57:27,725 | INFO     | [job] job monitor thread has finished
[2025-11-20 20:58:19] 2025-11-20 19:57:27,846 | INFO     | [payload] validate_post thread has finished
[2025-11-20 20:58:19] 2025-11-20 19:57:28,193 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 20:58:19] 2025-11-20 19:57:28,322 | INFO     | [data] copytool_in thread has finished
[2025-11-20 20:58:19] 2025-11-20 19:57:28,323 | INFO     | [data] copytool_out thread has finished
[2025-11-20 20:58:19] 2025-11-20 19:57:28,330 | INFO     | [job] validate thread has finished
[2025-11-20 20:58:19] 2025-11-20 19:57:28,338 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 20:58:19] 2025-11-20 19:57:28,364 | INFO     | [payload] control thread has finished
[2025-11-20 20:58:19] 2025-11-20 19:57:28,410 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 20:58:19] 2025-11-20 19:57:28,469 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 20:58:19] 2025-11-20 19:57:28,687 | INFO     | [job] control thread has finished
[2025-11-20 20:58:19] 2025-11-20 19:57:28,703 | INFO     | [payload] failed_post thread has finished
[2025-11-20 20:58:19] 2025-11-20 19:57:30,323 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 20:58:19] 2025-11-20 19:57:55,963 | INFO     | PID=2021721 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 20:58:19] 2025-11-20 19:57:55,963 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 20:58:19] 2025-11-20 19:57:55,963 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 20:58:19] 2025-11-20 19:57:55,963 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 20:58:19] 2025-11-20 19:58:13,040 | INFO     | [monitor] cgroup control has ended
[2025-11-20 20:58:19] 2025-11-20 19:58:14,091 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139635177985856)>', '<ExcThread(monitor, started 139634537387776)>']
[2025-11-20 20:58:19] 2025-11-20 19:58:15,051 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 20:58:19] 2025-11-20 19:58:15,051 | INFO     | [monitor] control thread has ended
[2025-11-20 20:58:19] 2025-11-20 19:58:19,103 | INFO     | all workflow threads have been joined
[2025-11-20 20:58:19] 2025-11-20 19:58:19,103 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 20:58:19] 2025-11-20 19:58:19,103 | INFO     | traces error code: 0
[2025-11-20 20:58:19] 2025-11-20 19:58:19,103 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 20:58:19] 2025-11-20 19:58:19,151 [wrapper] ==== pilot stdout END ====
[2025-11-20 20:58:19] 2025-11-20 19:58:19,154 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 20:58:19] 2025-11-20 19:58:19,157 [wrapper] pilotpid: 2021721
[2025-11-20 20:58:19] 2025-11-20 19:58:19,160 [wrapper] Pilot exit status: 0
[2025-11-20 20:58:19] 2025-11-20 19:58:19,167 [wrapper] pandaids: 6893852462
[2025-11-20 20:58:19] 2025-11-20 19:58:19,183 [wrapper] cleanup supervisor_pilot 2021728 2021722
[2025-11-20 20:58:19] 2025-11-20 19:58:19,186 [wrapper] Test setup, not cleaning
[2025-11-20 20:58:19] 2025-11-20 19:58:19,189 [wrapper] apfmon messages muted
[2025-11-20 20:58:19] 2025-11-20 19:58:19,191 [wrapper] ==== wrapper stdout END ====
[2025-11-20 20:58:19] 2025-11-20 19:58:19,194 [wrapper] ==== wrapper stderr END ====
[2025-11-20 20:58:19]  *** Error codes and diagnostics ***
[2025-11-20 20:58:19]     "exeErrorCode": 65,
[2025-11-20 20:58:19]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 20:58:19]     "pilotErrorCode": 1305,
[2025-11-20 20:58:19]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 20:58:19]  *** Listing of results directory ***
[2025-11-20 20:58:19] total 406280
[2025-11-20 20:58:19] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:54 pilot3.tar.gz
[2025-11-20 20:58:19] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:58 queuedata.json
[2025-11-20 20:58:19] -rwx------ 1 boinc boinc     36292 Nov 20 12:59 runpilot2-wrapper.sh
[2025-11-20 20:58:19] -rw-r--r-- 1 boinc boinc       100 Nov 20 20:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 20:58:19] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 20:54 run_atlas
[2025-11-20 20:58:19] -rw-r--r-- 1 boinc boinc       105 Nov 20 20:54 job.xml
[2025-11-20 20:58:19] -rw-r--r-- 2 boinc boinc 411839775 Nov 20 20:54 EVNT.47493127._000384.pool.root.1
[2025-11-20 20:58:19] -rw-r--r-- 2 boinc boinc    590106 Nov 20 20:54 input.tar.gz
[2025-11-20 20:58:19] -rw-r--r-- 2 boinc boinc     15847 Nov 20 20:54 start_atlas.sh
[2025-11-20 20:58:19] drwxrwx--x 2 boinc boinc      4096 Nov 20 20:54 shared
[2025-11-20 20:58:19] -rw-r--r-- 1 boinc boinc         0 Nov 20 20:54 boinc_setup_complete
[2025-11-20 20:58:19] -rw-r--r-- 1 boinc boinc      6194 Nov 20 20:54 init_data.xml
[2025-11-20 20:58:19] -rw-r--r-- 1 boinc boinc         0 Nov 20 20:54 boinc_lockfile
[2025-11-20 20:58:19] -rw-r--r-- 1 boinc boinc      2786 Nov 20 20:54 pandaJob.out
[2025-11-20 20:58:19] -rw------- 1 boinc boinc    989440 Nov 20 20:54 agis_schedconf.cvmfs.json
[2025-11-20 20:58:19] -rw------- 1 boinc boinc   1526164 Nov 20 20:54 agis_ddmendpoints.agis.ALL.json
[2025-11-20 20:58:19] drwx------ 5 boinc boinc      4096 Nov 20 20:54 pilot3
[2025-11-20 20:58:19] -rw-r--r-- 1 boinc boinc       522 Nov 20 20:55 boinc_task_state.xml
[2025-11-20 20:58:19] -rw------- 1 boinc boinc       939 Nov 20 20:55 memory_monitor_summary.json
[2025-11-20 20:58:19] -rw------- 1 boinc boinc     54352 Nov 20 20:55 log.47523449._003838.job.log.tgz.1
[2025-11-20 20:58:19] -rw------- 1 boinc boinc        95 Nov 20 20:57 pilot_heartbeat.json
[2025-11-20 20:58:19] -rw------- 1 boinc boinc      8380 Nov 20 20:57 heartbeat.json
[2025-11-20 20:58:19] -rw-r--r-- 1 boinc boinc      8192 Nov 20 20:58 boinc_mmap_file
[2025-11-20 20:58:19] -rw-r--r-- 1 boinc boinc        22 Nov 20 20:58 wrapper_checkpoint.txt
[2025-11-20 20:58:19] -rw------- 1 boinc boinc      4752 Nov 20 20:58 pilotlog.txt
[2025-11-20 20:58:19] -rw------- 1 boinc boinc     93178 Nov 20 20:58 log.47523449._003838.job.log.1
[2025-11-20 20:58:19] -rw------- 1 boinc boinc       186 Nov 20 20:58 output.list
[2025-11-20 20:58:19] -rw-r--r-- 1 boinc boinc       620 Nov 20 20:58 runtime_log
[2025-11-20 20:58:19] -rw------- 1 boinc boinc    163840 Nov 20 20:58 result.tar.gz
[2025-11-20 20:58:19] -rw-r--r-- 1 boinc boinc      8744 Nov 20 20:58 runtime_log.err
[2025-11-20 20:58:19] -rw------- 1 boinc boinc       649 Nov 20 20:58 cE8MDmqUIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNhHKDm1ihlRn.diag
[2025-11-20 20:58:19] -rw-r--r-- 1 boinc boinc      8467 Nov 20 20:58 stderr.txt
[2025-11-20 20:58:19] No HITS result produced
[2025-11-20 20:58:19]  *** Contents of shared directory: ***
[2025-11-20 20:58:19] total 402948
[2025-11-20 20:58:19] -rw-r--r-- 2 boinc boinc 411839775 Nov 20 20:54 ATLAS.root_0
[2025-11-20 20:58:19] -rw-r--r-- 2 boinc boinc    590106 Nov 20 20:54 input.tar.gz
[2025-11-20 20:58:19] -rw-r--r-- 2 boinc boinc     15847 Nov 20 20:54 start_atlas.sh
[2025-11-20 20:58:19] -rw------- 1 boinc boinc    163840 Nov 20 20:58 result.tar.gz
20:58:21 (2017987): run_atlas exited; CPU time 31.529753
20:58:21 (2017987): called boinc_finish(0)

</stderr_txt>
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