Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:31:50 (3726346): wrapper (7.7.26015): starting
15:31:50 (3726346): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 15:31:50] Arguments: --nthreads 4
[2025-11-22 15:31:50] Threads: 4
[2025-11-22 15:31:50] Checking for CVMFS
[2025-11-22 15:31:50] No cvmfs_config command found, will try listing directly
[2025-11-22 15:31:50] CVMFS is ok
[2025-11-22 15:31:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 15:31:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 15:31:50] Further information can be found at the LHC@home message board.
[2025-11-22 15:31:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 15:31:50] Checking for apptainer binary...
[2025-11-22 15:31:50] which: no apptainer in ((null))
[2025-11-22 15:31:50] apptainer is not installed, using version from CVMFS
[2025-11-22 15:31:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 15:31:50] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-11-22 15:31:50] apptainer works
[2025-11-22 15:31:50] Set ATHENA_PROC_NUMBER=4
[2025-11-22 15:31:50] Set ATHENA_CORE_NUMBER=4
[2025-11-22 15:31:50] Starting ATLAS job with PandaID=6893852738
[2025-11-22 15:31:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 07:14:51]  *** The last 200 lines of the pilot log: ***
[2025-11-23 07:14:51] 2025-11-23 05:46:35,487 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 07:14:51] 2025-11-23 05:46:36,093 | INFO     | time since job start (54872s) is within the limit (172800.0s)
[2025-11-23 07:14:51] 2025-11-23 05:46:36,149 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 07:14:51] 2025-11-23 05:46:36,169 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2691.8485546874995
[2025-11-23 07:14:51] 2025-11-23 05:46:36,202 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6893852738/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 07:14:51] 2025-11-23 05:46:36,203 | INFO     | extracted standard info from prmon json
[2025-11-23 07:14:51] 2025-11-23 05:46:36,203 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 07:14:51] 2025-11-23 05:46:36,203 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 07:14:51] 2025-11-23 05:46:36,216 | INFO     | fitting pss+swap vs Time
[2025-11-23 07:14:51] 2025-11-23 05:46:36,217 | INFO     | sum of square deviations: 225298011101.98203
[2025-11-23 07:14:51] 2025-11-23 05:46:36,236 | INFO     | sum of deviations: 517390239490.9019
[2025-11-23 07:14:51] 2025-11-23 05:46:36,236 | INFO     | mean x: 1763849349.0044494
[2025-11-23 07:14:51] 2025-11-23 05:46:36,236 | INFO     | mean y: 2278286.024471635
[2025-11-23 07:14:51] 2025-11-23 05:46:36,236 | INFO     | intersect: -4048349736.138548
[2025-11-23 07:14:51] 2025-11-23 05:46:36,237 | INFO     | chi2: 3.8857449415899286
[2025-11-23 07:14:51] 2025-11-23 05:46:36,238 | INFO     | sum of square deviations: 221559737579.48215
[2025-11-23 07:14:51] 2025-11-23 05:46:36,257 | INFO     | sum of deviations: 699865420477.843
[2025-11-23 07:14:51] 2025-11-23 05:46:36,257 | INFO     | mean x: 1763849196.5044742
[2025-11-23 07:14:51] 2025-11-23 05:46:36,258 | INFO     | mean y: 2285726.16442953
[2025-11-23 07:14:51] 2025-11-23 05:46:36,258 | INFO     | intersect: -5569381188.851036
[2025-11-23 07:14:51] 2025-11-23 05:46:36,259 | INFO     | chi2: 1.8201204292747495
[2025-11-23 07:14:51] 2025-11-23 05:46:36,259 | INFO     | current chi2=1.8201204292747495 (change=53.15903496923781 %)
[2025-11-23 07:14:51] 2025-11-23 05:46:36,260 | INFO     | sum of square deviations: 217863046231.98257
[2025-11-23 07:14:51] 2025-11-23 05:46:36,278 | INFO     | sum of deviations: 688411219622.3456
[2025-11-23 07:14:51] 2025-11-23 05:46:36,279 | INFO     | mean x: 1763849044.0044994
[2025-11-23 07:14:51] 2025-11-23 05:46:36,279 | INFO     | mean y: 2285253.663667042
[2025-11-23 07:14:51] 2025-11-23 05:46:36,279 | INFO     | intersect: -5571186212.074941
[2025-11-23 07:14:51] 2025-11-23 05:46:36,280 | INFO     | chi2: 1.8201396399105223
[2025-11-23 07:14:51] 2025-11-23 05:46:36,280 | INFO     | current chi2=1.8201396399105223 (change=-0.0010554595983777698 %)
[2025-11-23 07:14:51] 2025-11-23 05:46:36,280 | INFO     | right removable region: 888
[2025-11-23 07:14:51] 2025-11-23 05:46:36,281 | INFO     | sum of square deviations: 221559735139.48218
[2025-11-23 07:14:51] 2025-11-23 05:46:36,299 | INFO     | sum of deviations: 373381792541.3717
[2025-11-23 07:14:51] 2025-11-23 05:46:36,299 | INFO     | mean x: 1763849501.5044742
[2025-11-23 07:14:51] 2025-11-23 05:46:36,299 | INFO     | mean y: 2284146.4071588367
[2025-11-23 07:14:51] 2025-11-23 05:46:36,299 | INFO     | intersect: -2970229285.378327
[2025-11-23 07:14:51] 2025-11-23 05:46:36,300 | INFO     | chi2: 2.175264351575183
[2025-11-23 07:14:51] 2025-11-23 05:46:36,300 | INFO     | current chi2=2.175264351575183 (change=44.01937378099935 %)
[2025-11-23 07:14:51] 2025-11-23 05:46:36,301 | INFO     | sum of square deviations: 217863041351.98264
[2025-11-23 07:14:51] 2025-11-23 05:46:36,319 | INFO     | sum of deviations: 364291498209.5354
[2025-11-23 07:14:51] 2025-11-23 05:46:36,319 | INFO     | mean x: 1763849654.0044994
[2025-11-23 07:14:51] 2025-11-23 05:46:36,319 | INFO     | mean y: 2284520.8661417323
[2025-11-23 07:14:51] 2025-11-23 05:46:36,320 | INFO     | intersect: -2947070399.9418716
[2025-11-23 07:14:51] 2025-11-23 05:46:36,320 | INFO     | chi2: 2.1741678917359017
[2025-11-23 07:14:51] 2025-11-23 05:46:36,321 | INFO     | current chi2=2.1741678917359017 (change=0.05040582026213602 %)
[2025-11-23 07:14:51] 2025-11-23 05:46:36,321 | INFO     | left removable region: 20
[2025-11-23 07:14:51] 2025-11-23 05:46:36,322 | INFO     | sum of square deviations: 202785761692.9817
[2025-11-23 07:14:51] 2025-11-23 05:46:36,338 | INFO     | sum of deviations: 530282088910.4491
[2025-11-23 07:14:51] 2025-11-23 05:46:36,338 | INFO     | mean x: 1763849623.5046084
[2025-11-23 07:14:51] 2025-11-23 05:46:36,338 | INFO     | mean y: 2291671.5126728113
[2025-11-23 07:14:51] 2025-11-23 05:46:36,338 | INFO     | intersect: -4610151801.18063
[2025-11-23 07:14:51] 2025-11-23 05:46:36,339 | INFO     | chi2: 0.08860116412759166
[2025-11-23 07:14:51] 2025-11-23 05:46:36,340 | INFO     | current memory leak: 2.61 B/s (using 868 data points, chi2=0.09)
[2025-11-23 07:14:51] 2025-11-23 05:46:36,341 | INFO     | could have reported an average CPU frequency of 2712 MHz (34 samples)
[2025-11-23 07:14:51] 2025-11-23 05:46:36,341 | INFO     | ..............................
[2025-11-23 07:14:51] 2025-11-23 05:46:36,341 | INFO     | . Timing measurements:
[2025-11-23 07:14:51] 2025-11-23 05:46:36,341 | INFO     | . get job = 0 s
[2025-11-23 07:14:51] 2025-11-23 05:46:36,341 | INFO     | . initial setup = 1 s
[2025-11-23 07:14:51] 2025-11-23 05:46:36,341 | INFO     | . payload setup = 9 s
[2025-11-23 07:14:51] 2025-11-23 05:46:36,341 | INFO     | . stage-in = 0 s
[2025-11-23 07:14:51] 2025-11-23 05:46:36,341 | INFO     | . payload execution = 54828 s
[2025-11-23 07:14:51] 2025-11-23 05:46:36,341 | INFO     | . stage-out = 2 s
[2025-11-23 07:14:51] 2025-11-23 05:46:36,341 | INFO     | . log creation = 0 s
[2025-11-23 07:14:51] 2025-11-23 05:46:36,342 | INFO     | ..............................
[2025-11-23 07:14:51] 2025-11-23 05:46:36,817 | INFO     | 
[2025-11-23 07:14:51] 2025-11-23 05:46:36,817 | INFO     | job summary report
[2025-11-23 07:14:51] 2025-11-23 05:46:36,817 | INFO     | --------------------------------------------------
[2025-11-23 07:14:51] 2025-11-23 05:46:36,817 | INFO     | PanDA job id: 6893852738
[2025-11-23 07:14:51] 2025-11-23 05:46:36,817 | INFO     | task id: 47523449
[2025-11-23 07:14:51] 2025-11-23 05:46:36,817 | INFO     | errors: (none)
[2025-11-23 07:14:51] 2025-11-23 05:46:36,817 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 07:14:51] 2025-11-23 05:46:36,817 | INFO     | pilot state: finished 
[2025-11-23 07:14:51] 2025-11-23 05:46:36,817 | INFO     | transexitcode: 0
[2025-11-23 07:14:51] 2025-11-23 05:46:36,817 | INFO     | exeerrorcode: 0
[2025-11-23 07:14:51] 2025-11-23 05:46:36,818 | INFO     | exeerrordiag: 
[2025-11-23 07:14:51] 2025-11-23 05:46:36,818 | INFO     | exitcode: 0
[2025-11-23 07:14:51] 2025-11-23 05:46:36,818 | INFO     | exitmsg: OK
[2025-11-23 07:14:51] 2025-11-23 05:46:36,818 | INFO     | cpuconsumptiontime: 216836 s
[2025-11-23 07:14:51] 2025-11-23 05:46:36,818 | INFO     | nevents: 1000
[2025-11-23 07:14:51] 2025-11-23 05:46:36,818 | INFO     | neventsw: 0
[2025-11-23 07:14:51] 2025-11-23 05:46:36,818 | INFO     | pid: 3737916
[2025-11-23 07:14:51] 2025-11-23 05:46:36,818 | INFO     | pgrp: 3737916
[2025-11-23 07:14:51] 2025-11-23 05:46:36,818 | INFO     | corecount: 4
[2025-11-23 07:14:51] 2025-11-23 05:46:36,818 | INFO     | event service: False
[2025-11-23 07:14:51] 2025-11-23 05:46:36,818 | INFO     | sizes: {0: 2298648, 1: 2298847, 8: 2299109, 11: 2299137, 54841: 2351733, 54844: 2360751, 54846: 2360935, 54854: 2361181}
[2025-11-23 07:14:51] 2025-11-23 05:46:36,818 | INFO     | --------------------------------------------------
[2025-11-23 07:14:51] 2025-11-23 05:46:36,818 | INFO     | 
[2025-11-23 07:14:51] 2025-11-23 05:46:36,819 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-11-23 07:14:51] 2025-11-23 05:46:36,877 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,877 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,877 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,877 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,877 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,877 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,877 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,877 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,877 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,878 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,878 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,878 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,878 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,878 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,878 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 07:14:51] 2025-11-23 05:46:36,878 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,878 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 07:14:51] 2025-11-23 05:46:36,879 | INFO     | job 6893852738 has completed (purged errors)
[2025-11-23 07:14:51] 2025-11-23 05:46:36,879 | INFO     | overall cleanup function is called
[2025-11-23 07:14:51] 2025-11-23 05:46:37,894 | INFO     | --- collectZombieJob: --- 10, [3737916]
[2025-11-23 07:14:51] 2025-11-23 05:46:37,895 | INFO     | zombie collector waiting for pid 3737916
[2025-11-23 07:14:51] 2025-11-23 05:46:37,895 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 07:14:51] 2025-11-23 05:46:37,895 | INFO     | collected zombie processes
[2025-11-23 07:14:51] 2025-11-23 05:46:37,895 | INFO     | will attempt to kill all subprocesses of pid=3737916
[2025-11-23 07:14:51] 2025-11-23 05:46:38,685 | INFO     | process IDs to be killed: [3737916] (in reverse order)
[2025-11-23 07:14:51] 2025-11-23 05:46:38,950 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 07:14:51] 2025-11-23 05:46:38,950 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 07:14:51] 2025-11-23 05:46:38,983 | INFO     | did not find any defunct processes belonging to 3737916
[2025-11-23 07:14:51] 2025-11-23 05:46:39,015 | INFO     | did not find any defunct processes belonging to 3737916
[2025-11-23 07:14:51] 2025-11-23 05:46:39,016 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 07:14:51] 2025-11-23 05:46:39,017 | INFO     | ready for new job
[2025-11-23 07:14:51] 2025-11-23 05:46:39,017 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 07:14:51] 2025-11-23 05:46:39,022 | INFO     | ***************************************
[2025-11-23 07:14:51] 2025-11-23 05:46:39,023 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 07:14:51] 2025-11-23 05:46:39,023 | INFO     | ***************************************
[2025-11-23 07:14:51] 2025-11-23 05:46:39,023 | INFO     | 
[2025-11-23 07:14:51] 2025-11-23 05:46:39,031 | INFO     | architecture information:
[2025-11-23 07:14:51] 2025-11-23 05:46:39,032 | INFO     | executing command: cat /etc/os-release
[2025-11-23 07:14:51] 2025-11-23 05:46:39,054 | INFO     | cat /etc/os-release:
[2025-11-23 07:14:51] NAME="CentOS Linux"
[2025-11-23 07:14:51] VERSION="7 (Core)"
[2025-11-23 07:14:51] ID="centos"
[2025-11-23 07:14:51] ID_LIKE="rhel fedora"
[2025-11-23 07:14:51] VERSION_ID="7"
[2025-11-23 07:14:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 07:14:51] ANSI_COLOR="0;31"
[2025-11-23 07:14:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 07:14:51] HOME_URL="https://www.centos.org/"
[2025-11-23 07:14:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 07:14:51] 
[2025-11-23 07:14:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 07:14:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 07:14:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 07:14:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 07:14:51] 
[2025-11-23 07:14:51] 2025-11-23 05:46:39,055 | INFO     | ***************************************
[2025-11-23 07:14:51] 2025-11-23 05:46:39,557 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-11-23 07:14:51] 2025-11-23 05:46:39,578 | INFO     | sufficient remaining disk space (3327366529024 B)
[2025-11-23 07:14:51] 2025-11-23 05:46:39,578 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 07:14:51] 2025-11-23 05:46:39,578 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 07:14:51] 2025-11-23 05:46:39,578 | INFO     | update_server=False
[2025-11-23 07:14:51] 2025-11-23 05:46:39,579 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 07:14:51] 2025-11-23 05:46:39,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 07:14:51] 2025-11-23 05:46:39,579 | INFO     | aborting loop
[2025-11-23 07:14:51] 2025-11-23 05:46:39,579 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 07:14:51] 2025-11-23 05:46:39,622 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 07:14:51] 2025-11-23 05:46:39,824 | INFO     | all data control threads have been joined
[2025-11-23 07:14:51] 2025-11-23 05:46:39,897 | INFO     | all payload control threads have been joined
[2025-11-23 07:14:51] 2025-11-23 05:46:40,343 | INFO     | all job control threads have been joined
[2025-11-23 07:14:51] 2025-11-23 05:46:40,584 | INFO     | [job] retrieve thread has finished
[2025-11-23 07:14:51] 2025-11-23 05:46:40,584 | INFO     | [job] job monitor thread has finished
[2025-11-23 07:14:51] 2025-11-23 05:46:40,600 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 07:14:51] 2025-11-23 05:46:40,659 | INFO     | [data] copytool_in thread has finished
[2025-11-23 07:14:51] 2025-11-23 05:46:40,829 | INFO     | [data] control thread has finished
[2025-11-23 07:14:51] 2025-11-23 05:46:40,902 | INFO     | [payload] control thread has finished
[2025-11-23 07:14:51] 2025-11-23 05:46:41,069 | INFO     | [payload] failed_post thread has finished
[2025-11-23 07:14:51] 2025-11-23 05:46:41,129 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 07:14:51] 2025-11-23 05:46:41,211 | INFO     | [payload] validate_post thread has finished
[2025-11-23 07:14:51] 2025-11-23 05:46:41,345 | INFO     | [job] control thread has finished
[2025-11-23 07:14:51] 2025-11-23 05:46:41,444 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 07:14:51] 2025-11-23 05:46:41,628 | INFO     | [data] copytool_out thread has finished
[2025-11-23 07:14:51] 2025-11-23 05:46:41,630 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 07:14:51] 2025-11-23 05:46:41,864 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 07:14:51] 2025-11-23 05:46:41,978 | INFO     | [job] validate thread has finished
[2025-11-23 07:14:51] 2025-11-23 05:46:42,449 | INFO     | [job] queue monitor thread has finished
[2025-11-23 07:14:51] 2025-11-23 05:46:43,585 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 07:14:51] 2025-11-23 05:47:03,924 [wrapper] supervise_pilot (15 min periods counter: 62)
[2025-11-23 07:14:51] 2025-11-23 05:47:10,081 | INFO     | PID=3730439 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 07:14:51] 2025-11-23 05:47:10,082 | INFO     | .. there are 11 such processes running
[2025-11-23 07:14:51] 2025-11-23 05:47:10,082 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 07:14:51] 2025-11-23 05:47:10,082 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 07:14:51] 2025-11-23 05:47:10,083 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 07:14:51] 2025-11-23 05:47:33,357 | INFO     | [monitor] cgroup control has ended
[2025-11-23 07:14:51] 2025-11-23 05:47:35,165 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22849441441600)>', '<ExcThread(monitor, started 22849200809728)>']
[2025-11-23 07:14:51] 2025-11-23 05:47:35,203 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 07:14:51] 2025-11-23 05:47:35,204 | INFO     | [monitor] control thread has ended
[2025-11-23 07:14:51] 2025-11-23 05:47:40,189 | INFO     | all workflow threads have been joined
[2025-11-23 07:14:51] 2025-11-23 05:47:40,190 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 07:14:51] 2025-11-23 05:47:40,190 | INFO     | traces error code: 0
[2025-11-23 07:14:51] 2025-11-23 05:47:40,190 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 07:14:51] 2025-11-23 05:47:40,347 [wrapper] ==== pilot stdout END ====
[2025-11-23 07:14:51] 2025-11-23 05:47:40,352 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 07:14:51] 2025-11-23 05:47:40,355 [wrapper] pilotpid: 3730439
[2025-11-23 07:14:51] 2025-11-23 05:47:40,359 [wrapper] Pilot exit status: 0
[2025-11-23 07:14:51] 2025-11-23 05:47:40,374 [wrapper] pandaids: 6893852738
[2025-11-23 07:14:51] 2025-11-23 05:47:40,543 [wrapper] cleanup supervisor_pilot 1021434 3730440
[2025-11-23 07:14:51] 2025-11-23 05:47:40,548 [wrapper] Test setup, not cleaning
[2025-11-23 07:14:51] 2025-11-23 05:47:40,552 [wrapper] apfmon messages muted
[2025-11-23 07:14:51] 2025-11-23 05:47:40,555 [wrapper] ==== wrapper stdout END ====
[2025-11-23 07:14:51] 2025-11-23 05:47:40,559 [wrapper] ==== wrapper stderr END ====
[2025-11-23 07:14:51]  *** Error codes and diagnostics ***
[2025-11-23 07:14:51]     "exeErrorCode": 0,
[2025-11-23 07:14:51]     "exeErrorDiag": "",
[2025-11-23 07:14:51]     "pilotErrorCode": 0,
[2025-11-23 07:14:51]     "pilotErrorDiag": "",
[2025-11-23 07:14:51]  *** Listing of results directory ***
[2025-11-23 07:14:51] total 1325084
[2025-11-23 07:14:51] -rw-r--r-- 1 boinc boinc    598293 Nov  6 09:41 pilot3.tar.gz
[2025-11-23 07:14:51] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:11 queuedata.json
[2025-11-23 07:14:51] -rwx------ 1 boinc boinc     36292 Nov 20 13:11 runpilot2-wrapper.sh
[2025-11-23 07:14:51] -rw-r--r-- 1 boinc boinc       100 Nov 22 15:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 07:14:51] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 15:31 run_atlas
[2025-11-23 07:14:51] -rw-r--r-- 1 boinc boinc       105 Nov 22 15:31 job.xml
[2025-11-23 07:14:51] -rw-r--r-- 1 boinc boinc      6688 Nov 22 15:31 init_data.xml
[2025-11-23 07:14:51] -rw-r--r-- 2 boinc boinc 409327931 Nov 22 15:31 EVNT.47493127._000399.pool.root.1
[2025-11-23 07:14:51] -rw-r--r-- 2 boinc boinc     15847 Nov 22 15:31 start_atlas.sh
[2025-11-23 07:14:51] drwxrwx--x 2 boinc boinc      4096 Nov 22 15:31 shared
[2025-11-23 07:14:51] -rw-r--r-- 2 boinc boinc    611284 Nov 22 15:31 input.tar.gz
[2025-11-23 07:14:51] -rw-r--r-- 1 boinc boinc         0 Nov 22 15:31 boinc_lockfile
[2025-11-23 07:14:51] -rw-r--r-- 1 boinc boinc      2786 Nov 22 15:31 pandaJob.out
[2025-11-23 07:14:51] -rw------- 1 boinc boinc    989768 Nov 22 15:32 agis_schedconf.cvmfs.json
[2025-11-23 07:14:51] drwx------ 7 boinc boinc      4096 Nov 22 15:32 pilot3
[2025-11-23 07:14:51] -rw-r--r-- 1 boinc boinc       532 Nov 23 06:41 boinc_task_state.xml
[2025-11-23 07:14:51] -rw------- 1 boinc boinc 925118234 Nov 23 06:45 HITS.47523449._003990.pool.root.1
[2025-11-23 07:14:51] -rw------- 1 boinc boinc      1039 Nov 23 06:46 memory_monitor_summary.json
[2025-11-23 07:14:51] -rw------- 1 boinc boinc   1526164 Nov 23 06:46 agis_ddmendpoints.agis.ALL.json
[2025-11-23 07:14:51] -rw------- 1 boinc boinc   1647216 Nov 23 06:46 log.47523449._003990.job.log.tgz.1
[2025-11-23 07:14:51] -rw------- 1 boinc boinc      8594 Nov 23 06:46 heartbeat.json
[2025-11-23 07:14:51] -rw------- 1 boinc boinc        95 Nov 23 06:47 pilot_heartbeat.json
[2025-11-23 07:14:51] -rw------- 1 boinc boinc      4836 Nov 23 06:47 pilotlog.txt
[2025-11-23 07:14:51] -rw------- 1 boinc boinc   7585914 Nov 23 06:47 log.47523449._003990.job.log.1
[2025-11-23 07:14:51] -rw------- 1 boinc boinc       353 Nov 23 06:47 output.list
[2025-11-23 07:14:51] -rw-r--r-- 1 boinc boinc       620 Nov 23 06:47 runtime_log
[2025-11-23 07:14:51] -rw------- 1 boinc boinc   9256960 Nov 23 06:47 result.tar.gz
[2025-11-23 07:14:51] -rw-r--r-- 1 boinc boinc      9223 Nov 23 06:47 runtime_log.err
[2025-11-23 07:14:51] -rw------- 1 boinc boinc       670 Nov 23 06:47 QRAMDmfgIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmajHKDmw4vjhn.diag
[2025-11-23 07:14:51] -rw-r--r-- 1 boinc boinc        28 Nov 23 07:14 wrapper_checkpoint.txt
[2025-11-23 07:14:51] -rw-r--r-- 1 boinc boinc      8192 Nov 23 07:14 boinc_mmap_file
[2025-11-23 07:14:51] -rw-r--r-- 1 boinc boinc     21118 Nov 23 07:14 stderr.txt
[2025-11-23 07:14:51] HITS file was successfully produced:
[2025-11-23 07:14:51] -rw------- 1 boinc boinc 925118234 Nov 23 06:45 shared/HITS.pool.root.1
[2025-11-23 07:14:51]  *** Contents of shared directory: ***
[2025-11-23 07:14:51] total 1312836
[2025-11-23 07:14:51] -rw-r--r-- 2 boinc boinc 409327931 Nov 22 15:31 ATLAS.root_0
[2025-11-23 07:14:51] -rw-r--r-- 2 boinc boinc     15847 Nov 22 15:31 start_atlas.sh
[2025-11-23 07:14:51] -rw-r--r-- 2 boinc boinc    611284 Nov 22 15:31 input.tar.gz
[2025-11-23 07:14:51] -rw------- 1 boinc boinc 925118234 Nov 23 06:45 HITS.pool.root.1
[2025-11-23 07:14:51] -rw------- 1 boinc boinc   9256960 Nov 23 06:47 result.tar.gz
07:14:52 (3726346): run_atlas exited; CPU time 219466.670954
07:14:52 (3726346): called boinc_finish(0)

</stderr_txt>
]]>

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