Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:45:38 (7602): wrapper (7.7.26015): starting
22:45:38 (7602): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 22:45:38] Arguments: --nthreads 8
[2025-11-22 22:45:38] Threads: 8
[2025-11-22 22:45:38] Checking for CVMFS
[2025-11-22 22:45:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 22:45:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 22:45:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 22:45:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 22:45:39] 2.11.2.0 27084 279993 139656 153185 1 128 14994629 25165824 4008 130560 2 135180324 99.879 76425938 3052 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 22:45:39] CVMFS is ok
[2025-11-22 22:45:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 22:45:39] Checking for apptainer binary...
[2025-11-22 22:45:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 22:45:39] Running /usr/bin/apptainer --version
[2025-11-22 22:45:39] apptainer version 1.3.2-1.el7
[2025-11-22 22:45:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 22:45:45] cg-vwn405.simple-grid.lan
[2025-11-22 22:45:45] apptainer works
[2025-11-22 22:45:45] Set ATHENA_PROC_NUMBER=8
[2025-11-22 22:45:45] Set ATHENA_CORE_NUMBER=8
[2025-11-22 22:45:46] Starting ATLAS job with PandaID=6893843599
[2025-11-22 22:45:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 00:45:08]  *** The last 200 lines of the pilot log: ***
[2025-11-24 00:45:08] 2025-11-23 23:44:04,339 | INFO     | time since job start (93287s) is within the limit (172800.0s)
[2025-11-24 00:45:08] 2025-11-23 23:44:06,345 | INFO     | time since job start (93289s) is within the limit (172800.0s)
[2025-11-24 00:45:08] 2025-11-23 23:44:06,746 | INFO     | monitor loop #6253: job 0:6893843599 is in state 'finished'
[2025-11-24 00:45:08] 2025-11-23 23:44:06,747 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:45:08] 2025-11-23 23:44:08,352 | INFO     | time since job start (93291s) is within the limit (172800.0s)
[2025-11-24 00:45:08] 2025-11-23 23:44:09,260 | INFO     | monitor loop #6254: job 0:6893843599 is in state 'finished'
[2025-11-24 00:45:08] 2025-11-23 23:44:09,260 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:45:08] 2025-11-23 23:44:10,361 | INFO     | time since job start (93293s) is within the limit (172800.0s)
[2025-11-24 00:45:08] 2025-11-23 23:44:11,767 | INFO     | monitor loop #6255: job 0:6893843599 is in state 'finished'
[2025-11-24 00:45:08] 2025-11-23 23:44:11,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:45:08] 2025-11-23 23:44:12,368 | INFO     | time since job start (93295s) is within the limit (172800.0s)
[2025-11-24 00:45:08] 2025-11-23 23:44:14,261 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 00:45:08] 2025-11-23 23:44:14,263 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 00:45:08] 2025-11-23 23:44:14,265 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6893843599/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 00:45:08] 2025-11-23 23:44:14,266 | INFO     | extracted standard info from prmon json
[2025-11-24 00:45:08] 2025-11-23 23:44:14,266 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 00:45:08] 2025-11-23 23:44:14,266 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 00:45:08] 2025-11-23 23:44:14,296 | INFO     | fitting pss+swap vs Time
[2025-11-24 00:45:08] 2025-11-23 23:44:14,299 | INFO     | sum of square deviations: 1093253258086.6781
[2025-11-24 00:45:08] 2025-11-23 23:44:14,370 | INFO     | sum of deviations: 2786109534311.4834
[2025-11-24 00:45:08] 2025-11-23 23:44:14,371 | INFO     | mean x: 1763895006.9408672
[2025-11-24 00:45:08] 2025-11-23 23:44:14,371 | INFO     | mean y: 2849303.0275952695
[2025-11-24 00:45:08] 2025-11-23 23:44:14,371 | INFO     | intersect: -4492362268.500814
[2025-11-24 00:45:08] 2025-11-23 23:44:14,373 | INFO     | chi2: 19.73706043523252
[2025-11-24 00:45:08] 2025-11-23 23:44:14,379 | INFO     | sum of square deviations: 1082514739538.7635
[2025-11-24 00:45:08] 2025-11-23 23:44:14,389 | INFO     | time since job start (93297s) is within the limit (172800.0s)
[2025-11-24 00:45:08] 2025-11-23 23:44:14,404 | INFO     | monitor loop #6256: job 0:6893843599 is in state 'finished'
[2025-11-24 00:45:08] 2025-11-23 23:44:14,405 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:45:08] 2025-11-23 23:44:14,458 | INFO     | sum of deviations: 3306429891956.322
[2025-11-24 00:45:08] 2025-11-23 23:44:14,459 | INFO     | mean x: 1763894854.4456162
[2025-11-24 00:45:08] 2025-11-23 23:44:14,459 | INFO     | mean y: 2856691.882663151
[2025-11-24 00:45:08] 2025-11-23 23:44:14,459 | INFO     | intersect: -5384778653.841964
[2025-11-24 00:45:08] 2025-11-23 23:44:14,461 | INFO     | chi2: 16.274723574209325
[2025-11-24 00:45:08] 2025-11-23 23:44:14,461 | INFO     | current chi2=16.274723574209325 (change=17.54231270854599 %)
[2025-11-24 00:45:08] 2025-11-23 23:44:14,461 | INFO     | right removable region: 1516
[2025-11-24 00:45:08] 2025-11-23 23:44:14,463 | INFO     | sum of square deviations: 1082513401808.7633
[2025-11-24 00:45:08] 2025-11-23 23:44:14,544 | INFO     | sum of deviations: 2203875664257.6143
[2025-11-24 00:45:08] 2025-11-23 23:44:14,544 | INFO     | mean x: 1763895159.4456162
[2025-11-24 00:45:08] 2025-11-23 23:44:14,545 | INFO     | mean y: 2857568.8437706
[2025-11-24 00:45:08] 2025-11-23 23:44:14,545 | INFO     | intersect: -3588234799.8128777
[2025-11-24 00:45:08] 2025-11-23 23:44:14,547 | INFO     | chi2: 15.938510084777388
[2025-11-24 00:45:08] 2025-11-23 23:44:14,547 | INFO     | current chi2=15.938510084777388 (change=19.24577554454037 %)
[2025-11-24 00:45:08] 2025-11-23 23:44:14,547 | INFO     | left removable region: 10
[2025-11-24 00:45:08] 2025-11-23 23:44:14,549 | INFO     | sum of square deviations: 1059135825505.6526
[2025-11-24 00:45:08] 2025-11-23 23:44:14,618 | INFO     | sum of deviations: 2617854201437.025
[2025-11-24 00:45:08] 2025-11-23 23:44:14,618 | INFO     | mean x: 1763895128.9528553
[2025-11-24 00:45:08] 2025-11-23 23:44:14,618 | INFO     | mean y: 2869650.8313413016
[2025-11-24 00:45:08] 2025-11-23 23:44:14,618 | INFO     | intersect: -4356930256.814112
[2025-11-24 00:45:08] 2025-11-23 23:44:14,620 | INFO     | chi2: 11.09223750291479
[2025-11-24 00:45:08] 2025-11-23 23:44:14,620 | INFO     | current memory leak: 2.47 B/s (using 1506 data points, chi2=11.09)
[2025-11-24 00:45:08] 2025-11-23 23:44:14,623 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-24 00:45:08] 2025-11-23 23:44:14,623 | INFO     | ..............................
[2025-11-24 00:45:08] 2025-11-23 23:44:14,623 | INFO     | . Timing measurements:
[2025-11-24 00:45:08] 2025-11-23 23:44:14,623 | INFO     | . get job = 0 s
[2025-11-24 00:45:08] 2025-11-23 23:44:14,623 | INFO     | . initial setup = 9 s
[2025-11-24 00:45:08] 2025-11-23 23:44:14,623 | INFO     | . payload setup = 128 s
[2025-11-24 00:45:08] 2025-11-23 23:44:14,623 | INFO     | . stage-in = 0 s
[2025-11-24 00:45:08] 2025-11-23 23:44:14,623 | INFO     | . payload execution = 92969 s
[2025-11-24 00:45:08] 2025-11-23 23:44:14,624 | INFO     | . stage-out = 4 s
[2025-11-24 00:45:08] 2025-11-23 23:44:14,624 | INFO     | . log creation = 1 s
[2025-11-24 00:45:08] 2025-11-23 23:44:14,624 | INFO     | ..............................
[2025-11-24 00:45:08] 2025-11-23 23:44:14,751 | INFO     | 
[2025-11-24 00:45:08] 2025-11-23 23:44:14,751 | INFO     | job summary report
[2025-11-24 00:45:08] 2025-11-23 23:44:14,751 | INFO     | --------------------------------------------------
[2025-11-24 00:45:08] 2025-11-23 23:44:14,751 | INFO     | PanDA job id: 6893843599
[2025-11-24 00:45:08] 2025-11-23 23:44:14,751 | INFO     | task id: 47523449
[2025-11-24 00:45:08] 2025-11-23 23:44:14,751 | INFO     | errors: (none)
[2025-11-24 00:45:08] 2025-11-23 23:44:14,751 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 00:45:08] 2025-11-23 23:44:14,752 | INFO     | pilot state: finished 
[2025-11-24 00:45:08] 2025-11-23 23:44:14,752 | INFO     | transexitcode: 0
[2025-11-24 00:45:08] 2025-11-23 23:44:14,752 | INFO     | exeerrorcode: 0
[2025-11-24 00:45:08] 2025-11-23 23:44:14,752 | INFO     | exeerrordiag: 
[2025-11-24 00:45:08] 2025-11-23 23:44:14,752 | INFO     | exitcode: 0
[2025-11-24 00:45:08] 2025-11-23 23:44:14,752 | INFO     | exitmsg: OK
[2025-11-24 00:45:08] 2025-11-23 23:44:14,752 | INFO     | cpuconsumptiontime: 339407 s
[2025-11-24 00:45:08] 2025-11-23 23:44:14,752 | INFO     | nevents: 1000
[2025-11-24 00:45:08] 2025-11-23 23:44:14,752 | INFO     | neventsw: 0
[2025-11-24 00:45:08] 2025-11-23 23:44:14,752 | INFO     | pid: 18186
[2025-11-24 00:45:08] 2025-11-23 23:44:14,752 | INFO     | pgrp: 18186
[2025-11-24 00:45:08] 2025-11-23 23:44:14,753 | INFO     | corecount: 8
[2025-11-24 00:45:08] 2025-11-23 23:44:14,753 | INFO     | event service: False
[2025-11-24 00:45:08] 2025-11-23 23:44:14,753 | INFO     | sizes: {0: 2298574, 1: 2298658, 2: 2298857, 13: 2298857, 24: 2298913, 35: 2298941, 45: 2299097, 56: 2299125, 67: 2299153, 78: 2299181, 88: 2299237, 95: 2299807, 99
[2025-11-24 00:45:08] 2025-11-23 23:44:14,753 | INFO     | --------------------------------------------------
[2025-11-24 00:45:08] 2025-11-23 23:44:14,753 | INFO     | 
[2025-11-24 00:45:08] 2025-11-23 23:44:14,753 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-24 00:45:08] 2025-11-23 23:44:14,798 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,799 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,799 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,799 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,799 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,799 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,799 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,799 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,799 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,800 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,800 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,800 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,800 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,800 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,800 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,800 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,800 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,801 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 00:45:08] 2025-11-23 23:44:14,801 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,801 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 00:45:08] 2025-11-23 23:44:14,801 | INFO     | job 6893843599 has completed (purged errors)
[2025-11-24 00:45:08] 2025-11-23 23:44:14,801 | INFO     | overall cleanup function is called
[2025-11-24 00:45:08] 2025-11-23 23:44:15,818 | INFO     | --- collectZombieJob: --- 10, [18186]
[2025-11-24 00:45:08] 2025-11-23 23:44:15,819 | INFO     | zombie collector waiting for pid 18186
[2025-11-24 00:45:08] 2025-11-23 23:44:15,819 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 00:45:08] 2025-11-23 23:44:15,819 | INFO     | collected zombie processes
[2025-11-24 00:45:08] 2025-11-23 23:44:15,819 | INFO     | will attempt to kill all subprocesses of pid=18186
[2025-11-24 00:45:08] 2025-11-23 23:44:15,931 | INFO     | process IDs to be killed: [18186] (in reverse order)
[2025-11-24 00:45:08] 2025-11-23 23:44:16,010 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 00:45:08] 2025-11-23 23:44:16,010 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 00:45:08] 2025-11-23 23:44:16,014 | INFO     | did not find any defunct processes belonging to 18186
[2025-11-24 00:45:08] 2025-11-23 23:44:16,019 | INFO     | did not find any defunct processes belonging to 18186
[2025-11-24 00:45:08] 2025-11-23 23:44:16,021 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 00:45:08] 2025-11-23 23:44:16,021 | INFO     | ready for new job
[2025-11-24 00:45:08] 2025-11-23 23:44:16,021 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 00:45:08] 2025-11-23 23:44:16,028 | INFO     | ***************************************
[2025-11-24 00:45:08] 2025-11-23 23:44:16,029 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 00:45:08] 2025-11-23 23:44:16,029 | INFO     | ***************************************
[2025-11-24 00:45:08] 2025-11-23 23:44:16,029 | INFO     | 
[2025-11-24 00:45:08] 2025-11-23 23:44:16,030 | INFO     | pilot is running in a VM
[2025-11-24 00:45:08] 2025-11-23 23:44:16,030 | INFO     | architecture information:
[2025-11-24 00:45:08] 2025-11-23 23:44:16,030 | INFO     | executing command: cat /etc/os-release
[2025-11-24 00:45:08] 2025-11-23 23:44:16,138 | INFO     | cat /etc/os-release:
[2025-11-24 00:45:08] NAME="CentOS Linux"
[2025-11-24 00:45:08] VERSION="7 (Core)"
[2025-11-24 00:45:08] ID="centos"
[2025-11-24 00:45:08] ID_LIKE="rhel fedora"
[2025-11-24 00:45:08] VERSION_ID="7"
[2025-11-24 00:45:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 00:45:08] ANSI_COLOR="0;31"
[2025-11-24 00:45:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 00:45:08] HOME_URL="https://www.centos.org/"
[2025-11-24 00:45:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 00:45:08] 
[2025-11-24 00:45:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 00:45:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 00:45:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 00:45:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 00:45:08] 
[2025-11-24 00:45:08] 2025-11-23 23:44:16,139 | INFO     | ***************************************
[2025-11-24 00:45:08] 2025-11-23 23:44:16,642 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-24 00:45:08] 2025-11-23 23:44:16,696 | INFO     | sufficient remaining disk space (495032729600 B)
[2025-11-24 00:45:08] 2025-11-23 23:44:16,697 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 00:45:08] 2025-11-23 23:44:16,697 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 00:45:08] 2025-11-23 23:44:16,697 | INFO     | update_server=False
[2025-11-24 00:45:08] 2025-11-23 23:44:16,697 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 00:45:08] 2025-11-23 23:44:16,698 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:45:08] 2025-11-23 23:44:16,698 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 00:45:08] 2025-11-23 23:44:16,911 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 00:45:08] 2025-11-23 23:44:16,912 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 00:45:08] 2025-11-23 23:44:16,912 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:45:08] 2025-11-23 23:44:16,912 | INFO     | will abort loop
[2025-11-24 00:45:08] 2025-11-23 23:44:17,376 | INFO     | all job control threads have been joined
[2025-11-24 00:45:08] 2025-11-23 23:44:17,611 | INFO     | all data control threads have been joined
[2025-11-24 00:45:08] 2025-11-23 23:44:17,704 | INFO     | [job] retrieve thread has finished
[2025-11-24 00:45:08] 2025-11-23 23:44:17,704 | INFO     | [job] queue monitor thread has finished
[2025-11-24 00:45:08] 2025-11-23 23:44:17,746 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 00:45:08] 2025-11-23 23:44:17,864 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 00:45:08] 2025-11-23 23:44:17,919 | INFO     | [job] job monitor thread has finished
[2025-11-24 00:45:08] 2025-11-23 23:44:18,149 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 00:45:08] 2025-11-23 23:44:18,162 | INFO     | all payload control threads have been joined
[2025-11-24 00:45:08] 2025-11-23 23:44:18,383 | INFO     | [job] control thread has finished
[2025-11-24 00:45:08] 2025-11-23 23:44:18,525 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 00:45:08] 2025-11-23 23:44:18,618 | INFO     | [data] control thread has finished
[2025-11-24 00:45:08] 2025-11-23 23:44:18,705 | INFO     | [data] copytool_out thread has finished
[2025-11-24 00:45:08] 2025-11-23 23:44:18,759 | INFO     | [payload] failed_post thread has finished
[2025-11-24 00:45:08] 2025-11-23 23:44:18,900 | INFO     | [job] validate thread has finished
[2025-11-24 00:45:08] 2025-11-23 23:44:19,037 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 00:45:08] 2025-11-23 23:44:19,097 | INFO     | [payload] validate_post thread has finished
[2025-11-24 00:45:08] 2025-11-23 23:44:19,118 | INFO     | [data] copytool_in thread has finished
[2025-11-24 00:45:08] 2025-11-23 23:44:19,168 | INFO     | [payload] control thread has finished
[2025-11-24 00:45:08] 2025-11-23 23:44:22,534 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 00:45:08] 2025-11-23 23:44:47,632 | INFO     | PID=11469 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 00:45:08] 2025-11-23 23:44:47,633 | INFO     | .. there are 9 such processes running
[2025-11-24 00:45:08] 2025-11-23 23:44:47,633 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 00:45:08] 2025-11-23 23:44:47,633 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 00:45:08] 2025-11-23 23:44:47,633 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 00:45:08] 2025-11-23 23:44:59,108 | INFO     | [monitor] cgroup control has ended
[2025-11-24 00:45:08] 2025-11-23 23:45:00,618 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139934214321984)>', '<ExcThread(monitor, started 139933616416512)>']
[2025-11-24 00:45:08] 2025-11-23 23:45:00,710 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 00:45:08] 2025-11-23 23:45:00,711 | INFO     | [monitor] control thread has ended
[2025-11-24 00:45:08] 2025-11-23 23:45:05,644 | INFO     | all workflow threads have been joined
[2025-11-24 00:45:08] 2025-11-23 23:45:05,645 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 00:45:08] 2025-11-23 23:45:05,645 | INFO     | traces error code: 0
[2025-11-24 00:45:08] 2025-11-23 23:45:05,645 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 00:45:08] 2025-11-23 23:45:06,132 [wrapper] ==== pilot stdout END ====
[2025-11-24 00:45:08] 2025-11-23 23:45:06,211 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 00:45:08] 2025-11-23 23:45:06,282 [wrapper] pilotpid: 11469
[2025-11-24 00:45:08] 2025-11-23 23:45:06,289 [wrapper] Pilot exit status: 0
[2025-11-24 00:45:08] 2025-11-23 23:45:06,420 [wrapper] pandaids: 6893843599
[2025-11-24 00:45:08] 2025-11-23 23:45:06,492 [wrapper] cleanup supervisor_pilot 29395 11470
[2025-11-24 00:45:08] 2025-11-23 23:45:06,497 [wrapper] Test setup, not cleaning
[2025-11-24 00:45:08] 2025-11-23 23:45:06,506 [wrapper] apfmon messages muted
[2025-11-24 00:45:08] 2025-11-23 23:45:06,509 [wrapper] ==== wrapper stdout END ====
[2025-11-24 00:45:08] 2025-11-23 23:45:06,513 [wrapper] ==== wrapper stderr END ====
[2025-11-24 00:45:08]  *** Error codes and diagnostics ***
[2025-11-24 00:45:08]     "exeErrorCode": 0,
[2025-11-24 00:45:08]     "exeErrorDiag": "",
[2025-11-24 00:45:08]     "pilotErrorCode": 0,
[2025-11-24 00:45:08]     "pilotErrorDiag": "",
[2025-11-24 00:45:08]  *** Listing of results directory ***
[2025-11-24 00:45:08] total 1333508
[2025-11-24 00:45:08] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 00:45:08] -rwx------. 1 boinc boinc     36292 Nov 20 11:19 runpilot2-wrapper.sh
[2025-11-24 00:45:08] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:20 queuedata.json
[2025-11-24 00:45:08] -rw-r--r--. 1 boinc boinc       100 Nov 22 22:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 00:45:08] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 22:45 run_atlas
[2025-11-24 00:45:08] -rw-r--r--. 1 boinc boinc       105 Nov 22 22:45 job.xml
[2025-11-24 00:45:08] -rw-r--r--. 2 boinc boinc 412828339 Nov 22 22:45 EVNT.47493127._000202.pool.root.1
[2025-11-24 00:45:08] drwxrwx--x. 2 boinc boinc        68 Nov 22 22:45 shared
[2025-11-24 00:45:08] -rw-r--r--. 2 boinc boinc    590098 Nov 22 22:45 input.tar.gz
[2025-11-24 00:45:08] -rw-r--r--. 1 boinc boinc      6392 Nov 22 22:45 init_data.xml
[2025-11-24 00:45:08] -rw-r--r--. 2 boinc boinc     15847 Nov 22 22:45 start_atlas.sh
[2025-11-24 00:45:08] -rw-r--r--. 1 boinc boinc         0 Nov 22 22:45 boinc_lockfile
[2025-11-24 00:45:08] -rw-r--r--. 1 boinc boinc      2783 Nov 22 22:45 pandaJob.out
[2025-11-24 00:45:08] -rw-------. 1 boinc boinc    989768 Nov 22 22:49 agis_schedconf.cvmfs.json
[2025-11-24 00:45:08] drwx------. 5 boinc boinc      4096 Nov 22 22:49 pilot3
[2025-11-24 00:45:08] -rw-r--r--. 1 boinc boinc       533 Nov 24 00:17 boinc_task_state.xml
[2025-11-24 00:45:08] -rw-------. 1 boinc boinc 918804881 Nov 24 00:43 HITS.47523449._002011.pool.root.1
[2025-11-24 00:45:08] -rw-------. 1 boinc boinc      1033 Nov 24 00:43 memory_monitor_summary.json
[2025-11-24 00:45:08] -rw-------. 1 boinc boinc        95 Nov 24 00:43 pilot_heartbeat.json
[2025-11-24 00:45:08] -rw-------. 1 boinc boinc   1526164 Nov 24 00:43 agis_ddmendpoints.agis.ALL.json
[2025-11-24 00:45:08] -rw-------. 1 boinc boinc   2576684 Nov 24 00:43 log.47523449._002011.job.log.tgz.1
[2025-11-24 00:45:08] -rw-------. 1 boinc boinc      8623 Nov 24 00:44 heartbeat.json
[2025-11-24 00:45:08] -rw-r--r--. 1 boinc boinc        29 Nov 24 00:44 wrapper_checkpoint.txt
[2025-11-24 00:45:08] -rw-r--r--. 1 boinc boinc      8192 Nov 24 00:44 boinc_mmap_file
[2025-11-24 00:45:08] -rw-------. 1 boinc boinc      5070 Nov 24 00:45 pilotlog.txt
[2025-11-24 00:45:08] -rw-------. 1 boinc boinc  12406213 Nov 24 00:45 log.47523449._002011.job.log.1
[2025-11-24 00:45:08] -rw-------. 1 boinc boinc       353 Nov 24 00:45 output.list
[2025-11-24 00:45:08] -rw-r--r--. 1 boinc boinc       620 Nov 24 00:45 runtime_log
[2025-11-24 00:45:08] -rw-------. 1 boinc boinc  15001600 Nov 24 00:45 result.tar.gz
[2025-11-24 00:45:08] -rw-r--r--. 1 boinc boinc      8817 Nov 24 00:45 runtime_log.err
[2025-11-24 00:45:08] -rw-------. 1 boinc boinc       662 Nov 24 00:45 k0hLDmsvGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyLHKDmyeZJdm.diag
[2025-11-24 00:45:08] -rw-r--r--. 1 boinc boinc     21415 Nov 24 00:45 stderr.txt
[2025-11-24 00:45:08] HITS file was successfully produced:
[2025-11-24 00:45:08] -rw-------. 1 boinc boinc 918804881 Nov 24 00:43 shared/HITS.pool.root.1
[2025-11-24 00:45:08]  *** Contents of shared directory: ***
[2025-11-24 00:45:08] total 1315676
[2025-11-24 00:45:08] -rw-r--r--. 2 boinc boinc 412828339 Nov 22 22:45 ATLAS.root_0
[2025-11-24 00:45:08] -rw-r--r--. 2 boinc boinc    590098 Nov 22 22:45 input.tar.gz
[2025-11-24 00:45:08] -rw-r--r--. 2 boinc boinc     15847 Nov 22 22:45 start_atlas.sh
[2025-11-24 00:45:08] -rw-------. 1 boinc boinc 918804881 Nov 24 00:43 HITS.pool.root.1
[2025-11-24 00:45:08] -rw-------. 1 boinc boinc  15001600 Nov 24 00:45 result.tar.gz
00:45:10 (7602): run_atlas exited; CPU time 339909.582712
00:45:10 (7602): called boinc_finish(0)

</stderr_txt>
]]>

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