Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:03:58 (4112519): wrapper (7.7.26015): starting
21:03:58 (4112519): wrapper: running run_atlas (--nthreads 3)
[2025-11-19 21:03:58] Arguments: --nthreads 3
[2025-11-19 21:03:58] Threads: 3
[2025-11-19 21:03:58] Checking for CVMFS
[2025-11-19 21:03:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 21:03:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 21:03:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 21:03:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 21:03:59] 2.9.2.0 4099368 1545 78864 153055 3 88 34337197 36864000 0 130560 0 12628856 99.988 189076 4284 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-19 21:03:59] CVMFS is ok
[2025-11-19 21:03:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 21:03:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 21:03:59] Further information can be found at the LHC@home message board.
[2025-11-19 21:03:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 21:03:59] Checking for apptainer binary...
[2025-11-19 21:03:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 21:03:59] Running /usr/bin/apptainer --version
[2025-11-19 21:03:59] apptainer version 1.4.1-1.1
[2025-11-19 21:03:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 21:03:59] thA335
[2025-11-19 21:03:59] apptainer works
[2025-11-19 21:03:59] Set ATHENA_PROC_NUMBER=3
[2025-11-19 21:03:59] Set ATHENA_CORE_NUMBER=3
[2025-11-19 21:03:59] Starting ATLAS job with PandaID=6891583802
[2025-11-19 21:03:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 21:08:17]  *** The last 200 lines of the pilot log: ***
[2025-11-19 21:08:17] 2025-11-19 20:07:25,542 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 21:08:17] 2025-11-19 20:07:25,542 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 21:08:17] 2025-11-19 20:07:25,542 | INFO     | update_server=False
[2025-11-19 21:08:17] 2025-11-19 20:07:25,542 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 21:08:17] 2025-11-19 20:07:25,542 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 21:08:17] 2025-11-19 20:07:25,966 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-19 21:08:17] 2025-11-19 20:07:25,967 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-19 21:08:17] 2025-11-19 20:07:25,967 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 21:08:17] 2025-11-19 20:07:25,967 | INFO     | will abort loop
[2025-11-19 21:08:17] 2025-11-19 20:07:26,090 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 21:08:17] 2025-11-19 20:07:26,292 | INFO     | all data control threads have been joined
[2025-11-19 21:08:17] 2025-11-19 20:07:26,548 | INFO     | [job] queue monitor thread has finished
[2025-11-19 21:08:17] 2025-11-19 20:07:26,548 | INFO     | [job] retrieve thread has finished
[2025-11-19 21:08:17] 2025-11-19 20:07:26,620 | INFO     | all payload control threads have been joined
[2025-11-19 21:08:17] 2025-11-19 20:07:26,973 | INFO     | [job] job monitor thread has finished
[2025-11-19 21:08:17] 2025-11-19 20:07:27,119 | INFO     | [data] copytool_in thread has finished
[2025-11-19 21:08:17] 2025-11-19 20:07:27,172 | INFO     | all job control threads have been joined
[2025-11-19 21:08:17] 2025-11-19 20:07:27,206 | INFO     | [payload] validate_post thread has finished
[2025-11-19 21:08:17] 2025-11-19 20:07:27,299 | INFO     | [data] control thread has finished
[2025-11-19 21:08:17] 2025-11-19 20:07:27,413 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 21:08:17] 2025-11-19 20:07:27,504 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 21:08:17] 2025-11-19 20:07:27,583 | INFO     | [job] validate thread has finished
[2025-11-19 21:08:17] 2025-11-19 20:07:27,626 | INFO     | [payload] control thread has finished
[2025-11-19 21:08:17] 2025-11-19 20:07:27,688 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 21:08:17] 2025-11-19 20:07:27,742 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 21:08:17] 2025-11-19 20:07:27,987 | INFO     | [payload] failed_post thread has finished
[2025-11-19 21:08:17] 2025-11-19 20:07:28,097 | INFO     | [data] copytool_out thread has finished
[2025-11-19 21:08:17] 2025-11-19 20:07:28,177 | INFO     | [job] control thread has finished
[2025-11-19 21:08:17] 2025-11-19 20:07:28,297 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 21:08:17] 2025-11-19 20:07:32,304 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 21:08:17] 2025-11-19 20:07:55,780 | INFO     | PID=4116248 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 21:08:17] 2025-11-19 20:07:55,780 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 21:08:17] 2025-11-19 20:07:55,780 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 21:08:17] 2025-11-19 20:07:55,780 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 21:08:17] 2025-11-19 20:08:10,919 | INFO     | [monitor] cgroup control has ended
[2025-11-19 21:08:17] 2025-11-19 20:08:12,126 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139864780728128)>', '<ExcThread(monitor, started 139864032917248)>']
[2025-11-19 21:08:17] 2025-11-19 20:08:12,870 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 21:08:17] 2025-11-19 20:08:12,871 | INFO     | [monitor] control thread has ended
[2025-11-19 21:08:17] 2025-11-19 20:08:17,135 | INFO     | all workflow threads have been joined
[2025-11-19 21:08:17] 2025-11-19 20:08:17,135 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 21:08:17] 2025-11-19 20:08:17,136 | INFO     | traces error code: 0
[2025-11-19 21:08:17] 2025-11-19 20:08:17,136 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 21:08:17] 2025-11-19 20:08:17,183 [wrapper] ==== pilot stdout END ====
[2025-11-19 21:08:17] 2025-11-19 20:08:17,186 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 21:08:17] 2025-11-19 20:08:17,189 [wrapper] pilotpid: 4116248
[2025-11-19 21:08:17] 2025-11-19 20:08:17,192 [wrapper] Pilot exit status: 0
[2025-11-19 21:08:17] 2025-11-19 20:08:17,200 [wrapper] pandaids: 6891583802
[2025-11-19 21:08:17] 2025-11-19 20:08:17,217 [wrapper] cleanup supervisor_pilot 4116254 4116249
[2025-11-19 21:08:17] 2025-11-19 20:08:17,219 [wrapper] Test setup, not cleaning
[2025-11-19 21:08:17] 2025-11-19 20:08:17,222 [wrapper] apfmon messages muted
[2025-11-19 21:08:17] 2025-11-19 20:08:17,224 [wrapper] ==== wrapper stdout END ====
[2025-11-19 21:08:17] 2025-11-19 20:08:17,227 [wrapper] ==== wrapper stderr END ====
[2025-11-19 21:08:17]  *** Error codes and diagnostics ***
[2025-11-19 21:08:17]     "exeErrorCode": 65,
[2025-11-19 21:08:17]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 21:08:17]     "pilotErrorCode": 1305,
[2025-11-19 21:08:17]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 21:08:17]  *** Listing of results directory ***
[2025-11-19 21:08:17] total 406128
[2025-11-19 21:08:17] -rw-r--r-- 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-19 21:08:17] -rwx------ 1 boinc boinc     36292 Nov 18 18:13 runpilot2-wrapper.sh
[2025-11-19 21:08:17] -rw-r--r-- 1 boinc boinc      5112 Nov 18 18:13 queuedata.json
[2025-11-19 21:08:17] -rw-r--r-- 1 boinc boinc       100 Nov 19 21:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 21:08:17] -rwxr-xr-x 1 boinc boinc      7986 Nov 19 21:03 run_atlas
[2025-11-19 21:08:17] -rw-r--r-- 1 boinc boinc       105 Nov 19 21:03 job.xml
[2025-11-19 21:08:17] -rw-r--r-- 2 boinc boinc 411664824 Nov 19 21:03 EVNT.47493065._000447.pool.root.1
[2025-11-19 21:08:17] -rw-r--r-- 2 boinc boinc    590099 Nov 19 21:03 input.tar.gz
[2025-11-19 21:08:17] -rw-r--r-- 2 boinc boinc     15120 Nov 19 21:03 start_atlas.sh
[2025-11-19 21:08:17] drwxrwx--x 2 boinc boinc      4096 Nov 19 21:03 shared
[2025-11-19 21:08:17] -rw-r--r-- 1 boinc boinc         0 Nov 19 21:03 boinc_setup_complete
[2025-11-19 21:08:17] -rw-r--r-- 1 boinc boinc      6194 Nov 19 21:03 init_data.xml
[2025-11-19 21:08:17] -rw-r--r-- 1 boinc boinc         0 Nov 19 21:03 boinc_lockfile
[2025-11-19 21:08:17] -rw-r--r-- 1 boinc boinc      2770 Nov 19 21:03 pandaJob.out
[2025-11-19 21:08:17] -rw------- 1 boinc boinc    989451 Nov 19 21:04 agis_schedconf.cvmfs.json
[2025-11-19 21:08:17] -rw------- 1 boinc boinc   1525063 Nov 19 21:04 agis_ddmendpoints.agis.ALL.json
[2025-11-19 21:08:17] drwx------ 5 boinc boinc      4096 Nov 19 21:04 pilot3
[2025-11-19 21:08:17] -rw-r--r-- 1 boinc boinc       523 Nov 19 21:05 boinc_task_state.xml
[2025-11-19 21:08:17] -rw------- 1 boinc boinc       961 Nov 19 21:05 memory_monitor_summary.json
[2025-11-19 21:08:17] -rw------- 1 boinc boinc     55819 Nov 19 21:05 log.47493068._004461.job.log.tgz.1
[2025-11-19 21:08:17] -rw------- 1 boinc boinc        95 Nov 19 21:07 pilot_heartbeat.json
[2025-11-19 21:08:17] -rw------- 1 boinc boinc      8400 Nov 19 21:07 heartbeat.json
[2025-11-19 21:08:17] -rw-r--r-- 1 boinc boinc        23 Nov 19 21:08 wrapper_checkpoint.txt
[2025-11-19 21:08:17] -rw-r--r-- 1 boinc boinc      8192 Nov 19 21:08 boinc_mmap_file
[2025-11-19 21:08:17] -rw------- 1 boinc boinc      4938 Nov 19 21:08 pilotlog.txt
[2025-11-19 21:08:17] -rw------- 1 boinc boinc     93529 Nov 19 21:08 log.47493068._004461.job.log.1
[2025-11-19 21:08:17] -rw------- 1 boinc boinc       186 Nov 19 21:08 output.list
[2025-11-19 21:08:17] -rw-r--r-- 1 boinc boinc       620 Nov 19 21:08 runtime_log
[2025-11-19 21:08:17] -rw------- 1 boinc boinc    174080 Nov 19 21:08 result.tar.gz
[2025-11-19 21:08:17] -rw-r--r-- 1 boinc boinc      8624 Nov 19 21:08 runtime_log.err
[2025-11-19 21:08:17] -rw------- 1 boinc boinc       649 Nov 19 21:08 K8SMDmASef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6XFKDmAkhPzn.diag
[2025-11-19 21:08:17] -rw-r--r-- 1 boinc boinc      8251 Nov 19 21:08 stderr.txt
[2025-11-19 21:08:17] No HITS result produced
[2025-11-19 21:08:17]  *** Contents of shared directory: ***
[2025-11-19 21:08:17] total 402792
[2025-11-19 21:08:17] -rw-r--r-- 2 boinc boinc 411664824 Nov 19 21:03 ATLAS.root_0
[2025-11-19 21:08:17] -rw-r--r-- 2 boinc boinc    590099 Nov 19 21:03 input.tar.gz
[2025-11-19 21:08:17] -rw-r--r-- 2 boinc boinc     15120 Nov 19 21:03 start_atlas.sh
[2025-11-19 21:08:17] -rw------- 1 boinc boinc    174080 Nov 19 21:08 result.tar.gz
21:08:19 (4112519): run_atlas exited; CPU time 31.961025
21:08:19 (4112519): called boinc_finish(0)

</stderr_txt>
]]>

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