Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:24:06 (8830): wrapper (7.7.26015): starting
23:24:06 (8830): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 23:24:06] Arguments: --nthreads 8
[2025-11-22 23:24:06] Threads: 8
[2025-11-22 23:24:06] Checking for CVMFS
[2025-11-22 23:24:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 23:24:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 23:24:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 23:24:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 23:24:09] 2.11.2.0 9336 77279 89324 153187 3 84 16502917 25165825 4632 130560 2 22857374 99.882 13342123 1927 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 23:24:09] CVMFS is ok
[2025-11-22 23:24:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 23:24:09] Checking for apptainer binary...
[2025-11-22 23:24:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 23:24:09] Running /usr/bin/apptainer --version
[2025-11-22 23:24:09] apptainer version 1.3.2-1.el7
[2025-11-22 23:24:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 23:24:24] cg-vwn413.simple-grid.lan
[2025-11-22 23:24:24] apptainer works
[2025-11-22 23:24:24] Set ATHENA_PROC_NUMBER=8
[2025-11-22 23:24:24] Set ATHENA_CORE_NUMBER=8
[2025-11-22 23:24:25] Starting ATLAS job with PandaID=6892546583
[2025-11-22 23:24:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 00:54:38]  *** The last 200 lines of the pilot log: ***
[2025-11-24 00:54:38] 2025-11-23 23:53:50,482 | INFO     | time since job start (91525s) is within the limit (172800.0s)
[2025-11-24 00:54:38] 2025-11-23 23:53:52,489 | INFO     | time since job start (91527s) is within the limit (172800.0s)
[2025-11-24 00:54:38] 2025-11-23 23:53:52,744 | INFO     | monitor loop #6156: job 0:6892546583 is in state 'finished'
[2025-11-24 00:54:38] 2025-11-23 23:53:52,744 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:54:38] 2025-11-23 23:53:53,762 | INFO     | PID=12652 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 00:54:38] 2025-11-23 23:53:53,763 | INFO     | .. there are 9 such processes running
[2025-11-24 00:54:38] 2025-11-23 23:53:54,767 | INFO     | time since job start (91529s) is within the limit (172800.0s)
[2025-11-24 00:54:38] 2025-11-23 23:53:55,253 | INFO     | monitor loop #6157: job 0:6892546583 is in state 'finished'
[2025-11-24 00:54:38] 2025-11-23 23:53:55,254 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:54:38] 2025-11-23 23:53:56,774 | INFO     | time since job start (91531s) is within the limit (172800.0s)
[2025-11-24 00:54:38] 2025-11-23 23:53:57,759 | INFO     | monitor loop #6158: job 0:6892546583 is in state 'finished'
[2025-11-24 00:54:38] 2025-11-23 23:53:57,760 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:54:38] 2025-11-23 23:53:58,781 | INFO     | time since job start (91533s) is within the limit (172800.0s)
[2025-11-24 00:54:38] 2025-11-23 23:54:00,166 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 00:54:38] 2025-11-23 23:54:00,168 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 00:54:38] 2025-11-23 23:54:00,169 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6892546583/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 00:54:38] 2025-11-23 23:54:00,170 | INFO     | extracted standard info from prmon json
[2025-11-24 00:54:38] 2025-11-23 23:54:00,170 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 00:54:38] 2025-11-23 23:54:00,170 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 00:54:38] 2025-11-23 23:54:00,220 | INFO     | fitting pss+swap vs Time
[2025-11-24 00:54:38] 2025-11-23 23:54:00,223 | INFO     | sum of square deviations: 1025738439480.4985
[2025-11-24 00:54:38] 2025-11-23 23:54:00,265 | INFO     | monitor loop #6159: job 0:6892546583 is in state 'finished'
[2025-11-24 00:54:38] 2025-11-23 23:54:00,266 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:54:38] 2025-11-23 23:54:00,328 | INFO     | sum of deviations: 3575942506139.316
[2025-11-24 00:54:38] 2025-11-23 23:54:00,329 | INFO     | mean x: 1763896484.7006712
[2025-11-24 00:54:38] 2025-11-23 23:54:00,329 | INFO     | mean y: 2838861.677852349
[2025-11-24 00:54:38] 2025-11-23 23:54:00,329 | INFO     | intersect: -6146479690.979127
[2025-11-24 00:54:38] 2025-11-23 23:54:00,331 | INFO     | chi2: 24.96559794312499
[2025-11-24 00:54:38] 2025-11-23 23:54:00,333 | INFO     | sum of square deviations: 1015447359595.7653
[2025-11-24 00:54:38] 2025-11-23 23:54:00,405 | INFO     | sum of deviations: 4064138031302.6167
[2025-11-24 00:54:38] 2025-11-23 23:54:00,405 | INFO     | mean x: 1763896332.2047138
[2025-11-24 00:54:38] 2025-11-23 23:54:00,405 | INFO     | mean y: 2846094.540740741
[2025-11-24 00:54:38] 2025-11-23 23:54:00,405 | INFO     | intersect: -7056818888.823964
[2025-11-24 00:54:38] 2025-11-23 23:54:00,407 | INFO     | chi2: 21.796611504935093
[2025-11-24 00:54:38] 2025-11-23 23:54:00,407 | INFO     | current chi2=21.796611504935093 (change=12.693412933306373 %)
[2025-11-24 00:54:38] 2025-11-23 23:54:00,408 | INFO     | right removable region: 1484
[2025-11-24 00:54:38] 2025-11-23 23:54:00,410 | INFO     | sum of square deviations: 1015446268305.7653
[2025-11-24 00:54:38] 2025-11-23 23:54:00,473 | INFO     | sum of deviations: 2964699004815.212
[2025-11-24 00:54:38] 2025-11-23 23:54:00,474 | INFO     | mean x: 1763896637.2047138
[2025-11-24 00:54:38] 2025-11-23 23:54:00,474 | INFO     | mean y: 2847917.9993265993
[2025-11-24 00:54:38] 2025-11-23 23:54:00,474 | INFO     | intersect: -5147028316.853369
[2025-11-24 00:54:38] 2025-11-23 23:54:00,475 | INFO     | chi2: 20.45639941065386
[2025-11-24 00:54:38] 2025-11-23 23:54:00,476 | INFO     | current chi2=20.45639941065386 (change=18.061648444165833 %)
[2025-11-24 00:54:38] 2025-11-23 23:54:00,476 | INFO     | left removable region: 10
[2025-11-24 00:54:38] 2025-11-23 23:54:00,478 | INFO     | sum of square deviations: 993047603961.1835
[2025-11-24 00:54:38] 2025-11-23 23:54:00,534 | INFO     | sum of deviations: 2994489434549.3345
[2025-11-24 00:54:38] 2025-11-23 23:54:00,535 | INFO     | mean x: 1763896606.713704
[2025-11-24 00:54:38] 2025-11-23 23:54:00,535 | INFO     | mean y: 2865059.3894165535
[2025-11-24 00:54:38] 2025-11-23 23:54:00,535 | INFO     | intersect: -5316084134.357466
[2025-11-24 00:54:38] 2025-11-23 23:54:00,537 | INFO     | chi2: 12.959207091971049
[2025-11-24 00:54:38] 2025-11-23 23:54:00,537 | INFO     | current memory leak: 3.02 B/s (using 1474 data points, chi2=12.96)
[2025-11-24 00:54:38] 2025-11-23 23:54:00,540 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-24 00:54:38] 2025-11-23 23:54:00,540 | INFO     | ..............................
[2025-11-24 00:54:38] 2025-11-23 23:54:00,540 | INFO     | . Timing measurements:
[2025-11-24 00:54:38] 2025-11-23 23:54:00,540 | INFO     | . get job = 0 s
[2025-11-24 00:54:38] 2025-11-23 23:54:00,541 | INFO     | . initial setup = 6 s
[2025-11-24 00:54:38] 2025-11-23 23:54:00,541 | INFO     | . payload setup = 168 s
[2025-11-24 00:54:38] 2025-11-23 23:54:00,541 | INFO     | . stage-in = 0 s
[2025-11-24 00:54:38] 2025-11-23 23:54:00,541 | INFO     | . payload execution = 91031 s
[2025-11-24 00:54:38] 2025-11-23 23:54:00,541 | INFO     | . stage-out = 6 s
[2025-11-24 00:54:38] 2025-11-23 23:54:00,541 | INFO     | . log creation = 2 s
[2025-11-24 00:54:38] 2025-11-23 23:54:00,541 | INFO     | ..............................
[2025-11-24 00:54:38] 2025-11-23 23:54:00,668 | INFO     | 
[2025-11-24 00:54:38] 2025-11-23 23:54:00,669 | INFO     | job summary report
[2025-11-24 00:54:38] 2025-11-23 23:54:00,669 | INFO     | --------------------------------------------------
[2025-11-24 00:54:38] 2025-11-23 23:54:00,669 | INFO     | PanDA job id: 6892546583
[2025-11-24 00:54:38] 2025-11-23 23:54:00,669 | INFO     | task id: 47493029
[2025-11-24 00:54:38] 2025-11-23 23:54:00,669 | INFO     | errors: (none)
[2025-11-24 00:54:38] 2025-11-23 23:54:00,669 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 00:54:38] 2025-11-23 23:54:00,670 | INFO     | pilot state: finished 
[2025-11-24 00:54:38] 2025-11-23 23:54:00,670 | INFO     | transexitcode: 0
[2025-11-24 00:54:38] 2025-11-23 23:54:00,670 | INFO     | exeerrorcode: 0
[2025-11-24 00:54:38] 2025-11-23 23:54:00,670 | INFO     | exeerrordiag: 
[2025-11-24 00:54:38] 2025-11-23 23:54:00,670 | INFO     | exitcode: 0
[2025-11-24 00:54:38] 2025-11-23 23:54:00,670 | INFO     | exitmsg: OK
[2025-11-24 00:54:38] 2025-11-23 23:54:00,670 | INFO     | cpuconsumptiontime: 336932 s
[2025-11-24 00:54:38] 2025-11-23 23:54:00,670 | INFO     | nevents: 1000
[2025-11-24 00:54:38] 2025-11-23 23:54:00,670 | INFO     | neventsw: 0
[2025-11-24 00:54:38] 2025-11-23 23:54:00,670 | INFO     | pid: 19245
[2025-11-24 00:54:38] 2025-11-23 23:54:00,670 | INFO     | pgrp: 19245
[2025-11-24 00:54:38] 2025-11-23 23:54:00,670 | INFO     | corecount: 8
[2025-11-24 00:54:38] 2025-11-23 23:54:00,671 | INFO     | event service: False
[2025-11-24 00:54:38] 2025-11-23 23:54:00,671 | INFO     | sizes: {0: 2298519, 1: 2298774, 2: 2298774, 12: 2298802, 23: 2298830, 34: 2298858, 45: 2299014, 55: 2299042, 66: 2299070, 77: 2299098, 88: 2299154, 99: 2299462, 10
[2025-11-24 00:54:38] 2025-11-23 23:54:00,671 | INFO     | --------------------------------------------------
[2025-11-24 00:54:38] 2025-11-23 23:54:00,671 | INFO     | 
[2025-11-24 00:54:38] 2025-11-23 23:54:00,671 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-11-24 00:54:38] 2025-11-23 23:54:00,789 | INFO     | time since job start (91535s) is within the limit (172800.0s)
[2025-11-24 00:54:38] 2025-11-23 23:54:01,082 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,082 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,082 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,083 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,083 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,083 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,083 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,083 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,083 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,083 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,083 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,083 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,083 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,083 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,083 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,084 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,084 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,084 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 00:54:38] 2025-11-23 23:54:01,084 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,084 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 00:54:38] 2025-11-23 23:54:01,084 | INFO     | job 6892546583 has completed (purged errors)
[2025-11-24 00:54:38] 2025-11-23 23:54:01,084 | INFO     | overall cleanup function is called
[2025-11-24 00:54:38] 2025-11-23 23:54:02,106 | INFO     | --- collectZombieJob: --- 10, [19245]
[2025-11-24 00:54:38] 2025-11-23 23:54:02,107 | INFO     | zombie collector waiting for pid 19245
[2025-11-24 00:54:38] 2025-11-23 23:54:02,107 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 00:54:38] 2025-11-23 23:54:02,107 | INFO     | collected zombie processes
[2025-11-24 00:54:38] 2025-11-23 23:54:02,107 | INFO     | will attempt to kill all subprocesses of pid=19245
[2025-11-24 00:54:38] 2025-11-23 23:54:02,252 | INFO     | process IDs to be killed: [19245] (in reverse order)
[2025-11-24 00:54:38] 2025-11-23 23:54:02,978 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 00:54:38] 2025-11-23 23:54:02,978 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 00:54:38] 2025-11-23 23:54:02,983 | INFO     | did not find any defunct processes belonging to 19245
[2025-11-24 00:54:38] 2025-11-23 23:54:02,988 | INFO     | did not find any defunct processes belonging to 19245
[2025-11-24 00:54:38] 2025-11-23 23:54:02,990 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 00:54:38] 2025-11-23 23:54:02,990 | INFO     | ready for new job
[2025-11-24 00:54:38] 2025-11-23 23:54:02,991 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 00:54:38] 2025-11-23 23:54:02,998 | INFO     | ***************************************
[2025-11-24 00:54:38] 2025-11-23 23:54:02,998 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 00:54:38] 2025-11-23 23:54:02,998 | INFO     | ***************************************
[2025-11-24 00:54:38] 2025-11-23 23:54:02,998 | INFO     | 
[2025-11-24 00:54:38] 2025-11-23 23:54:02,999 | INFO     | pilot is running in a VM
[2025-11-24 00:54:38] 2025-11-23 23:54:02,999 | INFO     | architecture information:
[2025-11-24 00:54:38] 2025-11-23 23:54:03,000 | INFO     | executing command: cat /etc/os-release
[2025-11-24 00:54:38] 2025-11-23 23:54:03,120 | INFO     | cat /etc/os-release:
[2025-11-24 00:54:38] NAME="CentOS Linux"
[2025-11-24 00:54:38] VERSION="7 (Core)"
[2025-11-24 00:54:38] ID="centos"
[2025-11-24 00:54:38] ID_LIKE="rhel fedora"
[2025-11-24 00:54:38] VERSION_ID="7"
[2025-11-24 00:54:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 00:54:38] ANSI_COLOR="0;31"
[2025-11-24 00:54:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 00:54:38] HOME_URL="https://www.centos.org/"
[2025-11-24 00:54:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 00:54:38] 
[2025-11-24 00:54:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 00:54:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 00:54:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 00:54:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 00:54:38] 
[2025-11-24 00:54:38] 2025-11-23 23:54:03,120 | INFO     | ***************************************
[2025-11-24 00:54:38] 2025-11-23 23:54:03,624 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-11-24 00:54:38] 2025-11-23 23:54:03,827 | INFO     | sufficient remaining disk space (494902706176 B)
[2025-11-24 00:54:38] 2025-11-23 23:54:03,828 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 00:54:38] 2025-11-23 23:54:03,828 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 00:54:38] 2025-11-23 23:54:03,828 | INFO     | update_server=False
[2025-11-24 00:54:38] 2025-11-23 23:54:03,828 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 00:54:38] 2025-11-23 23:54:03,829 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 00:54:38] 2025-11-23 23:54:03,836 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:54:38] 2025-11-23 23:54:03,837 | INFO     | aborting loop
[2025-11-24 00:54:38] 2025-11-23 23:54:04,223 | INFO     | all data control threads have been joined
[2025-11-24 00:54:38] 2025-11-23 23:54:04,328 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 00:54:38] 2025-11-23 23:54:04,347 | INFO     | all job control threads have been joined
[2025-11-24 00:54:38] 2025-11-23 23:54:04,835 | INFO     | [job] retrieve thread has finished
[2025-11-24 00:54:38] 2025-11-23 23:54:04,843 | INFO     | [job] job monitor thread has finished
[2025-11-24 00:54:38] 2025-11-23 23:54:04,990 | INFO     | [payload] validate_post thread has finished
[2025-11-24 00:54:38] 2025-11-23 23:54:05,114 | INFO     | [data] copytool_in thread has finished
[2025-11-24 00:54:38] 2025-11-23 23:54:05,133 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 00:54:38] 2025-11-23 23:54:05,230 | INFO     | [data] control thread has finished
[2025-11-24 00:54:38] 2025-11-23 23:54:05,300 | INFO     | [monitor] cgroup control has ended
[2025-11-24 00:54:38] 2025-11-23 23:54:05,303 | INFO     | all payload control threads have been joined
[2025-11-24 00:54:38] 2025-11-23 23:54:05,353 | INFO     | [job] control thread has finished
[2025-11-24 00:54:38] 2025-11-23 23:54:05,683 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:54:38] 2025-11-23 23:54:05,933 | INFO     | [payload] failed_post thread has finished
[2025-11-24 00:54:38] 2025-11-23 23:54:06,068 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 00:54:38] 2025-11-23 23:54:06,078 | INFO     | [job] validate thread has finished
[2025-11-24 00:54:38] 2025-11-23 23:54:06,144 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 00:54:38] 2025-11-23 23:54:06,295 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 00:54:38] 2025-11-23 23:54:06,309 | INFO     | [payload] control thread has finished
[2025-11-24 00:54:38] 2025-11-23 23:54:06,336 | INFO     | [data] copytool_out thread has finished
[2025-11-24 00:54:38] 2025-11-23 23:54:06,689 | INFO     | [job] queue monitor thread has finished
[2025-11-24 00:54:38] 2025-11-23 23:54:07,838 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 00:54:38] 2025-11-23 23:54:09,068 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139794055272256)>', '<ExcThread(monitor, started 139793384068864)>']
[2025-11-24 00:54:38] 2025-11-23 23:54:14,094 | INFO     | all workflow threads have been joined
[2025-11-24 00:54:38] 2025-11-23 23:54:14,095 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 00:54:38] 2025-11-23 23:54:14,095 | INFO     | traces error code: 0
[2025-11-24 00:54:38] 2025-11-23 23:54:14,095 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 00:54:38] 2025-11-23 23:54:33,973 | INFO     | PID=12652 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 00:54:38] 2025-11-23 23:54:33,973 | INFO     | .. there are 9 such processes running
[2025-11-24 00:54:38] 2025-11-23 23:54:33,974 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 00:54:38] 2025-11-23 23:54:33,974 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 00:54:38] 2025-11-23 23:54:33,974 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 00:54:38] 2025-11-23 23:54:33,974 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 00:54:38] 2025-11-23 23:54:33,974 | INFO     | [monitor] control thread has ended
[2025-11-24 00:54:38] 2025-11-23 23:54:34,306 [wrapper] ==== pilot stdout END ====
[2025-11-24 00:54:38] 2025-11-23 23:54:34,369 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 00:54:38] 2025-11-23 23:54:34,448 [wrapper] pilotpid: 12652
[2025-11-24 00:54:38] 2025-11-23 23:54:34,527 [wrapper] Pilot exit status: 0
[2025-11-24 00:54:38] 2025-11-23 23:54:34,909 [wrapper] pandaids: 6892546583
[2025-11-24 00:54:38] 2025-11-23 23:54:35,771 [wrapper] cleanup supervisor_pilot 26014 12653
[2025-11-24 00:54:38] 2025-11-23 23:54:35,844 [wrapper] Test setup, not cleaning
[2025-11-24 00:54:38] 2025-11-23 23:54:35,906 [wrapper] apfmon messages muted
[2025-11-24 00:54:38] 2025-11-23 23:54:35,999 [wrapper] ==== wrapper stdout END ====
[2025-11-24 00:54:38] 2025-11-23 23:54:36,057 [wrapper] ==== wrapper stderr END ====
[2025-11-24 00:54:38]  *** Error codes and diagnostics ***
[2025-11-24 00:54:38]     "exeErrorCode": 0,
[2025-11-24 00:54:38]     "exeErrorDiag": "",
[2025-11-24 00:54:38]     "pilotErrorCode": 0,
[2025-11-24 00:54:38]     "pilotErrorDiag": "",
[2025-11-24 00:54:38]  *** Listing of results directory ***
[2025-11-24 00:54:38] total 1329568
[2025-11-24 00:54:38] -rw-r--r--. 1 boinc boinc    576529 Nov 19 09:16 pilot3.tar.gz
[2025-11-24 00:54:38] -rw-r--r--. 1 boinc boinc      5112 Nov 19 09:24 queuedata.json
[2025-11-24 00:54:38] -rwx------. 1 boinc boinc     36292 Nov 19 09:26 runpilot2-wrapper.sh
[2025-11-24 00:54:38] -rw-r--r--. 1 boinc boinc       100 Nov 22 23:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 00:54:38] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 23:24 run_atlas
[2025-11-24 00:54:38] -rw-r--r--. 1 boinc boinc       105 Nov 22 23:24 job.xml
[2025-11-24 00:54:38] -rw-r--r--. 1 boinc boinc      6392 Nov 22 23:24 init_data.xml
[2025-11-24 00:54:38] -rw-r--r--. 2 boinc boinc 408067832 Nov 22 23:24 EVNT.47493027._000299.pool.root.1
[2025-11-24 00:54:38] -rw-r--r--. 2 boinc boinc     15120 Nov 22 23:24 start_atlas.sh
[2025-11-24 00:54:38] drwxrwx--x. 2 boinc boinc        68 Nov 22 23:24 shared
[2025-11-24 00:54:38] -rw-r--r--. 2 boinc boinc    590097 Nov 22 23:24 input.tar.gz
[2025-11-24 00:54:38] -rw-r--r--. 1 boinc boinc         0 Nov 22 23:24 boinc_lockfile
[2025-11-24 00:54:38] -rw-r--r--. 1 boinc boinc      2772 Nov 22 23:24 pandaJob.out
[2025-11-24 00:54:38] -rw-------. 1 boinc boinc    989784 Nov 22 23:28 agis_schedconf.cvmfs.json
[2025-11-24 00:54:38] drwx------. 5 boinc boinc      4096 Nov 22 23:28 pilot3
[2025-11-24 00:54:38] -rw-r--r--. 1 boinc boinc       533 Nov 24 00:26 boinc_task_state.xml
[2025-11-24 00:54:38] -rw-------. 1 boinc boinc 919993901 Nov 24 00:50 HITS.47493029._002943.pool.root.1
[2025-11-24 00:54:38] -rw-------. 1 boinc boinc      1030 Nov 24 00:52 memory_monitor_summary.json
[2025-11-24 00:54:38] -rw-------. 1 boinc boinc   1526164 Nov 24 00:52 agis_ddmendpoints.agis.ALL.json
[2025-11-24 00:54:38] -rw-------. 1 boinc boinc   2564773 Nov 24 00:52 log.47493029._002943.job.log.tgz.1
[2025-11-24 00:54:38] -rw-------. 1 boinc boinc      7940 Nov 24 00:54 heartbeat.json
[2025-11-24 00:54:38] -rw-r--r--. 1 boinc boinc        29 Nov 24 00:54 wrapper_checkpoint.txt
[2025-11-24 00:54:38] -rw-r--r--. 1 boinc boinc      8192 Nov 24 00:54 boinc_mmap_file
[2025-11-24 00:54:38] -rw-------. 1 boinc boinc        95 Nov 24 00:54 pilot_heartbeat.json
[2025-11-24 00:54:38] -rw-------. 1 boinc boinc       820 Nov 24 00:54 pilotlog.txt
[2025-11-24 00:54:38] -rw-------. 1 boinc boinc  12190190 Nov 24 00:54 log.47493029._002943.job.log.1
[2025-11-24 00:54:38] -rw-------. 1 boinc boinc       353 Nov 24 00:54 output.list
[2025-11-24 00:54:38] -rw-r--r--. 1 boinc boinc       620 Nov 24 00:54 runtime_log
[2025-11-24 00:54:38] -rw-------. 1 boinc boinc  14776320 Nov 24 00:54 result.tar.gz
[2025-11-24 00:54:38] -rw-r--r--. 1 boinc boinc      8717 Nov 24 00:54 runtime_log.err
[2025-11-24 00:54:38] -rw-------. 1 boinc boinc       662 Nov 24 00:54 bvYKDmHhsf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmi1GKDm4meyAo.diag
[2025-11-24 00:54:38] -rw-r--r--. 1 boinc boinc     21504 Nov 24 00:54 stderr.txt
[2025-11-24 00:54:38] HITS file was successfully produced:
[2025-11-24 00:54:39] -rw-------. 1 boinc boinc 919993901 Nov 24 00:50 shared/HITS.pool.root.1
[2025-11-24 00:54:39]  *** Contents of shared directory: ***
[2025-11-24 00:54:39] total 1311964
[2025-11-24 00:54:39] -rw-r--r--. 2 boinc boinc 408067832 Nov 22 23:24 ATLAS.root_0
[2025-11-24 00:54:39] -rw-r--r--. 2 boinc boinc     15120 Nov 22 23:24 start_atlas.sh
[2025-11-24 00:54:39] -rw-r--r--. 2 boinc boinc    590097 Nov 22 23:24 input.tar.gz
[2025-11-24 00:54:39] -rw-------. 1 boinc boinc 919993901 Nov 24 00:50 HITS.pool.root.1
[2025-11-24 00:54:39] -rw-------. 1 boinc boinc  14776320 Nov 24 00:54 result.tar.gz
00:54:40 (8830): run_atlas exited; CPU time 337521.257104
00:54:40 (8830): called boinc_finish(0)

</stderr_txt>
]]>

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