Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
20:54:27 (4568): wrapper (7.7.26015): starting
20:54:27 (4568): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 20:54:27] Arguments: --nthreads 12
[2025-11-22 20:54:27] Threads: 12
[2025-11-22 20:54:27] Checking for CVMFS
[2025-11-22 20:54:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 20:54:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 20:54:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 20:54:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 20:54:27] 2.13.0.0 3380 481 64968 153183 3 81 3300047 4096000 651 130560 0 343847 99.978 20012 596 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.248.156:3125 1
[2025-11-22 20:54:27] CVMFS is ok
[2025-11-22 20:54:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 20:54:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 20:54:27] Further information can be found at the LHC@home message board.
[2025-11-22 20:54:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 20:54:27] Checking for apptainer binary...
[2025-11-22 20:54:27] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-22 20:54:27] apptainer is not installed, using version from CVMFS
[2025-11-22 20:54:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 20:54:27] dagobert
[2025-11-22 20:54:27] apptainer works
[2025-11-22 20:54:27] Set ATHENA_PROC_NUMBER=12
[2025-11-22 20:54:27] Set ATHENA_CORE_NUMBER=12
[2025-11-22 20:54:27] Starting ATLAS job with PandaID=6892521699
[2025-11-22 20:54:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 23:41:54]  *** The last 200 lines of the pilot log: ***
[2025-11-22 23:41:54] 2025-11-22 22:41:09,444 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-22 23:41:54] 2025-11-22 22:41:10,377 | INFO     | monitor loop #742: job 0:6892521699 is in state 'finished'
[2025-11-22 23:41:54] 2025-11-22 22:41:10,377 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:41:54] 2025-11-22 22:41:11,223 | INFO     | time since job start (10000s) is within the limit (172800.0s)
[2025-11-22 23:41:54] 2025-11-22 22:41:12,515 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 23:41:54] 2025-11-22 22:41:12,515 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3210.385583333334
[2025-11-22 23:41:54] 2025-11-22 22:41:12,516 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6892521699/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 23:41:54] 2025-11-22 22:41:12,517 | INFO     | extracted standard info from prmon json
[2025-11-22 23:41:54] 2025-11-22 22:41:12,517 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 23:41:54] 2025-11-22 22:41:12,517 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 23:41:54] 2025-11-22 22:41:12,517 | INFO     | fitting pss+swap vs Time
[2025-11-22 23:41:54] 2025-11-22 22:41:12,518 | INFO     | sum of square deviations: 1367709365.0
[2025-11-22 23:41:54] 2025-11-22 22:41:12,518 | INFO     | sum of deviations: 79752907981.00002
[2025-11-22 23:41:54] 2025-11-22 22:41:12,518 | INFO     | mean x: 1763846258.5
[2025-11-22 23:41:54] 2025-11-22 22:41:12,518 | INFO     | mean y: 3577601.2560975607
[2025-11-22 23:41:54] 2025-11-22 22:41:12,518 | INFO     | intersect: -102848586715.6722
[2025-11-22 23:41:54] 2025-11-22 22:41:12,518 | INFO     | chi2: 2.3696475981531266
[2025-11-22 23:41:54] 2025-11-22 22:41:12,518 | INFO     | sum of square deviations: 1246386160.0
[2025-11-22 23:41:54] 2025-11-22 22:41:12,518 | INFO     | sum of deviations: 102989413501.00006
[2025-11-22 23:41:54] 2025-11-22 22:41:12,518 | INFO     | mean x: 1763846106.0
[2025-11-22 23:41:54] 2025-11-22 22:41:12,518 | INFO     | mean y: 3606204.2075471696
[2025-11-22 23:41:54] 2025-11-22 22:41:12,518 | INFO     | intersect: -145743740639.6974
[2025-11-22 23:41:54] 2025-11-22 22:41:12,518 | INFO     | chi2: 1.4190607077785033
[2025-11-22 23:41:54] 2025-11-22 22:41:12,518 | INFO     | current chi2=1.4190607077785033 (change=40.11511632005952 %)
[2025-11-22 23:41:54] 2025-11-22 22:41:12,518 | INFO     | sum of square deviations: 1132458442.5
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | sum of deviations: 95914765291.5
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | mean x: 1763845953.5
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | mean y: 3596734.9415584416
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | intersect: -149387201453.50015
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | chi2: 1.4196593891414915
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | current chi2=1.4196593891414915 (change=-0.04218856597934749 %)
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | right removable region: 153
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | sum of square deviations: 1246386160.0
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | sum of deviations: 43053527696.0
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | mean x: 1763846411.0
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | mean y: 3623113.0880503147
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | intersect: -60924372354.6077
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | chi2: 0.9856315896190406
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | current chi2=0.9856315896190406 (change=58.40598448532054 %)
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | sum of square deviations: 1132458442.5
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | sum of deviations: 37242088867.0
[2025-11-22 23:41:54] 2025-11-22 22:41:12,519 | INFO     | mean x: 1763846563.5
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | mean y: 3630876.272727273
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | intersect: -58002321483.97872
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | chi2: 0.9853421775692954
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | current chi2=0.9853421775692954 (change=0.029363106133505557 %)
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | left removable region: 20
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | sum of square deviations: 729472282.0
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | sum of deviations: 46083266363.0
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | mean x: 1763846533.0
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | mean y: 3666857.007518797
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | intersect: -111424569156.0684
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | chi2: 0.007891137379332745
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | current memory leak: 63.17 B/s (using 133 data points, chi2=0.01)
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | could have reported an average CPU frequency of 4166 MHz (9 samples)
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | ..............................
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | . Timing measurements:
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | . get job = 0 s
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | . initial setup = 1 s
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | . payload setup = 1 s
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | . stage-in = 0 s
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | . payload execution = 9977 s
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | . stage-out = 0 s
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | . log creation = 0 s
[2025-11-22 23:41:54] 2025-11-22 22:41:12,520 | INFO     | ..............................
[2025-11-22 23:41:54] 2025-11-22 22:41:12,542 | INFO     | 
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | job summary report
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | --------------------------------------------------
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | PanDA job id: 6892521699
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | task id: 47493029
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | errors: (none)
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | pilot state: finished 
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | transexitcode: 0
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | exeerrorcode: 0
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | exeerrordiag: 
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | exitcode: 0
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | exitmsg: OK
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | cpuconsumptiontime: 107629 s
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | nevents: 1000
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | neventsw: 0
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | pid: 14878
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | pgrp: 14878
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | corecount: 12
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | event service: False
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | sizes: {0: 2298788, 2: 2299050, 11: 2299078, 9982: 2328637, 9983: 2337631, 9986: 2337687, 9989: 2338125}
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | --------------------------------------------------
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | 
[2025-11-22 23:41:54] 2025-11-22 22:41:12,543 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-11-22 23:41:54] 2025-11-22 22:41:12,552 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,552 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,552 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,552 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,552 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,552 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,552 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,552 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,552 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,552 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,552 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,552 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,553 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,553 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,553 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,553 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,553 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,553 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 23:41:54] 2025-11-22 22:41:12,553 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,553 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 23:41:54] 2025-11-22 22:41:12,553 | INFO     | job 6892521699 has completed (purged errors)
[2025-11-22 23:41:54] 2025-11-22 22:41:12,553 | INFO     | overall cleanup function is called
[2025-11-22 23:41:54] 2025-11-22 22:41:13,562 | INFO     | --- collectZombieJob: --- 10, [14878]
[2025-11-22 23:41:54] 2025-11-22 22:41:13,562 | INFO     | zombie collector waiting for pid 14878
[2025-11-22 23:41:54] 2025-11-22 22:41:13,562 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 23:41:54] 2025-11-22 22:41:13,562 | INFO     | collected zombie processes
[2025-11-22 23:41:54] 2025-11-22 22:41:13,562 | INFO     | will attempt to kill all subprocesses of pid=14878
[2025-11-22 23:41:54] 2025-11-22 22:41:13,588 | INFO     | process IDs to be killed: [14878] (in reverse order)
[2025-11-22 23:41:54] 2025-11-22 22:41:13,606 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 23:41:54] 2025-11-22 22:41:13,606 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 23:41:54] 2025-11-22 22:41:13,607 | INFO     | did not find any defunct processes belonging to 14878
[2025-11-22 23:41:54] 2025-11-22 22:41:13,609 | INFO     | did not find any defunct processes belonging to 14878
[2025-11-22 23:41:54] 2025-11-22 22:41:13,609 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 23:41:54] 2025-11-22 22:41:13,609 | INFO     | ready for new job
[2025-11-22 23:41:54] 2025-11-22 22:41:13,609 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 23:41:54] 2025-11-22 22:41:13,610 | INFO     | ***************************************
[2025-11-22 23:41:54] 2025-11-22 22:41:13,610 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 23:41:54] 2025-11-22 22:41:13,610 | INFO     | ***************************************
[2025-11-22 23:41:54] 2025-11-22 22:41:13,610 | INFO     | 
[2025-11-22 23:41:54] 2025-11-22 22:41:13,610 | INFO     | architecture information:
[2025-11-22 23:41:54] 2025-11-22 22:41:13,611 | INFO     | executing command: cat /etc/os-release
[2025-11-22 23:41:54] 2025-11-22 22:41:13,617 | INFO     | cat /etc/os-release:
[2025-11-22 23:41:54] NAME="CentOS Linux"
[2025-11-22 23:41:54] VERSION="7 (Core)"
[2025-11-22 23:41:54] ID="centos"
[2025-11-22 23:41:54] ID_LIKE="rhel fedora"
[2025-11-22 23:41:54] VERSION_ID="7"
[2025-11-22 23:41:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 23:41:54] ANSI_COLOR="0;31"
[2025-11-22 23:41:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 23:41:54] HOME_URL="https://www.centos.org/"
[2025-11-22 23:41:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 23:41:54] 
[2025-11-22 23:41:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 23:41:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 23:41:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 23:41:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 23:41:54] 
[2025-11-22 23:41:54] 2025-11-22 22:41:13,617 | INFO     | ***************************************
[2025-11-22 23:41:54] 2025-11-22 22:41:14,118 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-11-22 23:41:54] 2025-11-22 22:41:14,127 | INFO     | sufficient remaining disk space (112152543232 B)
[2025-11-22 23:41:54] 2025-11-22 22:41:14,127 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 23:41:54] 2025-11-22 22:41:14,127 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 23:41:54] 2025-11-22 22:41:14,127 | INFO     | update_server=False
[2025-11-22 23:41:54] 2025-11-22 22:41:14,127 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 23:41:54] 2025-11-22 22:41:14,127 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:41:54] 2025-11-22 22:41:14,127 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:41:54] 2025-11-22 22:41:14,128 | INFO     | aborting loop
[2025-11-22 23:41:54] 2025-11-22 22:41:14,316 | INFO     | all job control threads have been joined
[2025-11-22 23:41:54] 2025-11-22 22:41:14,573 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 23:41:54] 2025-11-22 22:41:14,763 | INFO     | all payload control threads have been joined
[2025-11-22 23:41:54] 2025-11-22 22:41:15,132 | INFO     | [job] retrieve thread has finished
[2025-11-22 23:41:54] 2025-11-22 22:41:15,133 | INFO     | [job] queue monitor thread has finished
[2025-11-22 23:41:54] 2025-11-22 22:41:15,133 | INFO     | [job] job monitor thread has finished
[2025-11-22 23:41:54] 2025-11-22 22:41:15,169 | INFO     | [job] validate thread has finished
[2025-11-22 23:41:54] 2025-11-22 22:41:15,172 | INFO     | all data control threads have been joined
[2025-11-22 23:41:54] 2025-11-22 22:41:15,304 | INFO     | [data] copytool_in thread has finished
[2025-11-22 23:41:54] 2025-11-22 22:41:15,321 | INFO     | [job] control thread has finished
[2025-11-22 23:41:54] 2025-11-22 22:41:15,436 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 23:41:54] 2025-11-22 22:41:15,567 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 23:41:54] 2025-11-22 22:41:15,676 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 23:41:54] 2025-11-22 22:41:15,768 | INFO     | [payload] control thread has finished
[2025-11-22 23:41:54] 2025-11-22 22:41:15,855 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 23:41:54] 2025-11-22 22:41:15,865 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 23:41:54] 2025-11-22 22:41:16,062 | INFO     | [payload] failed_post thread has finished
[2025-11-22 23:41:54] 2025-11-22 22:41:16,176 | INFO     | [data] control thread has finished
[2025-11-22 23:41:54] 2025-11-22 22:41:16,477 | INFO     | [payload] validate_post thread has finished
[2025-11-22 23:41:54] 2025-11-22 22:41:16,578 | INFO     | [data] copytool_out thread has finished
[2025-11-22 23:41:54] 2025-11-22 22:41:19,442 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 23:41:54] 2025-11-22 22:41:44,317 | INFO     | PID=8346 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 23:41:54] 2025-11-22 22:41:44,317 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 23:41:54] 2025-11-22 22:41:44,317 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 23:41:54] 2025-11-22 22:41:44,318 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 23:41:54] 2025-11-22 22:41:48,309 | INFO     | [monitor] cgroup control has ended
[2025-11-22 23:41:54] 2025-11-22 22:41:49,315 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140121484314432)>', '<ExcThread(monitor, started 140120942434048)>']
[2025-11-22 23:41:54] 2025-11-22 22:41:49,343 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 23:41:54] 2025-11-22 22:41:49,343 | INFO     | [monitor] control thread has ended
[2025-11-22 23:41:54] 2025-11-22 22:41:54,340 | INFO     | all workflow threads have been joined
[2025-11-22 23:41:54] 2025-11-22 22:41:54,340 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 23:41:54] 2025-11-22 22:41:54,340 | INFO     | traces error code: 0
[2025-11-22 23:41:54] 2025-11-22 22:41:54,340 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 23:41:54] 2025-11-22 22:41:54,375 [wrapper] ==== pilot stdout END ====
[2025-11-22 23:41:54] 2025-11-22 22:41:54,377 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 23:41:54] 2025-11-22 22:41:54,378 [wrapper] pilotpid: 8346
[2025-11-22 23:41:54] 2025-11-22 22:41:54,379 [wrapper] Pilot exit status: 0
[2025-11-22 23:41:54] 2025-11-22 22:41:54,383 [wrapper] pandaids: 6892521699
[2025-11-22 23:41:54] 2025-11-22 22:41:54,392 [wrapper] cleanup supervisor_pilot  3743 8347
[2025-11-22 23:41:54] 2025-11-22 22:41:54,393 [wrapper] Test setup, not cleaning
[2025-11-22 23:41:54] 2025-11-22 22:41:54,394 [wrapper] apfmon messages muted
[2025-11-22 23:41:54] 2025-11-22 22:41:54,395 [wrapper] ==== wrapper stdout END ====
[2025-11-22 23:41:54] 2025-11-22 22:41:54,396 [wrapper] ==== wrapper stderr END ====
[2025-11-22 23:41:54]  *** Error codes and diagnostics ***
[2025-11-22 23:41:54]     "exeErrorCode": 0,
[2025-11-22 23:41:54]     "exeErrorDiag": "",
[2025-11-22 23:41:54]     "pilotErrorCode": 0,
[2025-11-22 23:41:54]     "pilotErrorDiag": "",
[2025-11-22 23:41:54]  *** Listing of results directory ***
[2025-11-22 23:41:54] total 1312900
[2025-11-22 23:41:54] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-22 23:41:54] -rwx------ 1 boinc boinc     36292 Nov 19 08:02 runpilot2-wrapper.sh
[2025-11-22 23:41:54] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:02 queuedata.json
[2025-11-22 23:41:54] -rw-r--r-- 1 boinc boinc       100 Nov 22 20:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 23:41:54] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 20:54 run_atlas
[2025-11-22 23:41:54] -rw-r--r-- 1 boinc boinc       105 Nov 22 20:54 job.xml
[2025-11-22 23:41:54] -rw-r--r-- 2 boinc boinc     15120 Nov 22 20:54 start_atlas.sh
[2025-11-22 23:41:54] drwxrwx--x 2 boinc boinc      4096 Nov 22 20:54 shared
[2025-11-22 23:41:54] -rw-r--r-- 2 boinc boinc    590093 Nov 22 20:54 input.tar.gz
[2025-11-22 23:41:54] -rw-r--r-- 1 boinc boinc      7168 Nov 22 20:54 init_data.xml
[2025-11-22 23:41:54] -rw-r--r-- 2 boinc boinc 412096686 Nov 22 20:54 EVNT.47493027._000003.pool.root.1
[2025-11-22 23:41:54] -rw-r--r-- 1 boinc boinc         0 Nov 22 20:54 boinc_lockfile
[2025-11-22 23:41:54] -rw-r--r-- 1 boinc boinc      2769 Nov 22 20:54 pandaJob.out
[2025-11-22 23:41:54] -rw------- 1 boinc boinc    989768 Nov 22 20:54 agis_schedconf.cvmfs.json
[2025-11-22 23:41:54] -rw------- 1 boinc boinc   1526164 Nov 22 20:54 agis_ddmendpoints.agis.ALL.json
[2025-11-22 23:41:54] drwx------ 5 boinc boinc      4096 Nov 22 20:54 pilot3
[2025-11-22 23:41:54] -rw-r--r-- 1 boinc boinc       531 Nov 22 23:38 boinc_task_state.xml
[2025-11-22 23:41:54] -rw------- 1 boinc boinc 921812471 Nov 22 23:40 HITS.47493029._000026.pool.root.1
[2025-11-22 23:41:54] -rw------- 1 boinc boinc        95 Nov 22 23:41 pilot_heartbeat.json
[2025-11-22 23:41:54] -rw------- 1 boinc boinc      1023 Nov 22 23:41 memory_monitor_summary.json
[2025-11-22 23:41:54] -rw------- 1 boinc boinc   1870058 Nov 22 23:41 log.47493029._000026.job.log.tgz.1
[2025-11-22 23:41:54] -rw------- 1 boinc boinc      8556 Nov 22 23:41 heartbeat.json
[2025-11-22 23:41:54] -rw-r--r-- 1 boinc boinc      8192 Nov 22 23:41 boinc_mmap_file
[2025-11-22 23:41:54] -rw-r--r-- 1 boinc boinc        29 Nov 22 23:41 wrapper_checkpoint.txt
[2025-11-22 23:41:54] -rw------- 1 boinc boinc      4746 Nov 22 23:41 pilotlog.txt
[2025-11-22 23:41:54] -rw------- 1 boinc boinc   1417367 Nov 22 23:41 log.47493029._000026.job.log.1
[2025-11-22 23:41:54] -rw------- 1 boinc boinc       353 Nov 22 23:41 output.list
[2025-11-22 23:41:54] -rw-r--r-- 1 boinc boinc       620 Nov 22 23:41 runtime_log
[2025-11-22 23:41:54] -rw------- 1 boinc boinc   3307520 Nov 22 23:41 result.tar.gz
[2025-11-22 23:41:54] -rw------- 1 boinc boinc       648 Nov 22 23:41 xmKNDmCOrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYoFKDmeMEgUm.diag
[2025-11-22 23:41:54] -rw-r--r-- 1 boinc boinc      8653 Nov 22 23:41 runtime_log.err
[2025-11-22 23:41:54] -rw-r--r-- 1 boinc boinc     21437 Nov 22 23:41 stderr.txt
[2025-11-22 23:41:54] HITS file was successfully produced:
[2025-11-22 23:41:54] -rw------- 1 boinc boinc 921812471 Nov 22 23:40 shared/HITS.pool.root.1
[2025-11-22 23:41:54]  *** Contents of shared directory: ***
[2025-11-22 23:41:54] total 1306484
[2025-11-22 23:41:54] -rw-r--r-- 2 boinc boinc     15120 Nov 22 20:54 start_atlas.sh
[2025-11-22 23:41:54] -rw-r--r-- 2 boinc boinc    590093 Nov 22 20:54 input.tar.gz
[2025-11-22 23:41:54] -rw-r--r-- 2 boinc boinc 412096686 Nov 22 20:54 ATLAS.root_0
[2025-11-22 23:41:54] -rw------- 1 boinc boinc 921812471 Nov 22 23:40 HITS.pool.root.1
[2025-11-22 23:41:54] -rw------- 1 boinc boinc   3307520 Nov 22 23:41 result.tar.gz
23:41:55 (4568): run_atlas exited; CPU time 107570.104531
23:41:55 (4568): called boinc_finish(0)

</stderr_txt>
]]>

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