Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:29:06 (3091441): wrapper (7.7.26015): starting
17:29:06 (3091441): wrapper: running run_atlas (--nthreads 3)
[2025-11-19 17:29:06] Arguments: --nthreads 3
[2025-11-19 17:29:06] Threads: 3
[2025-11-19 17:29:06] Checking for CVMFS
[2025-11-19 17:29:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 17:29:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 17:29:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 17:29:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 17:29:06] 2.9.2.0 4099368 1330 78796 153051 2 107 34309923 36864001 0 130560 0 9559729 99.984 185030 4289 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-19 17:29:06] CVMFS is ok
[2025-11-19 17:29:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 17:29:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 17:29:06] Further information can be found at the LHC@home message board.
[2025-11-19 17:29:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 17:29:06] Checking for apptainer binary...
[2025-11-19 17:29:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 17:29:06] Running /usr/bin/apptainer --version
[2025-11-19 17:29:06] apptainer version 1.4.1-1.1
[2025-11-19 17:29:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 17:29:07] thA335
[2025-11-19 17:29:07] apptainer works
[2025-11-19 17:29:07] Set ATHENA_PROC_NUMBER=3
[2025-11-19 17:29:07] Set ATHENA_CORE_NUMBER=3
[2025-11-19 17:29:07] Starting ATLAS job with PandaID=6892523372
[2025-11-19 17:29:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 17:33:25]  *** The last 200 lines of the pilot log: ***
[2025-11-19 17:33:25] 2025-11-19 16:32:37,552 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 17:33:25] 2025-11-19 16:32:37,552 | INFO     | update_server=False
[2025-11-19 17:33:25] 2025-11-19 16:32:37,552 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 17:33:25] 2025-11-19 16:32:37,552 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 17:33:25] 2025-11-19 16:32:37,846 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 17:33:25] 2025-11-19 16:32:37,847 | INFO     | aborting loop
[2025-11-19 17:33:25] 2025-11-19 16:32:38,332 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 17:33:25] 2025-11-19 16:32:38,491 | INFO     | all job control threads have been joined
[2025-11-19 17:33:25] 2025-11-19 16:32:38,558 | INFO     | [job] queue monitor thread has finished
[2025-11-19 17:33:25] 2025-11-19 16:32:38,559 | INFO     | [job] retrieve thread has finished
[2025-11-19 17:33:25] 2025-11-19 16:32:38,598 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 17:33:25] 2025-11-19 16:32:38,600 | INFO     | all data control threads have been joined
[2025-11-19 17:33:25] 2025-11-19 16:32:38,834 | INFO     | [payload] failed_post thread has finished
[2025-11-19 17:33:25] 2025-11-19 16:32:38,852 | INFO     | [job] job monitor thread has finished
[2025-11-19 17:33:25] 2025-11-19 16:32:39,011 | INFO     | all payload control threads have been joined
[2025-11-19 17:33:25] 2025-11-19 16:32:39,254 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 17:33:25] 2025-11-19 16:32:39,269 | INFO     | [data] copytool_in thread has finished
[2025-11-19 17:33:25] 2025-11-19 16:32:39,497 | INFO     | [job] control thread has finished
[2025-11-19 17:33:25] 2025-11-19 16:32:39,606 | INFO     | [data] control thread has finished
[2025-11-19 17:33:25] 2025-11-19 16:32:39,793 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 17:33:25] 2025-11-19 16:32:39,899 | INFO     | [payload] validate_post thread has finished
[2025-11-19 17:33:25] 2025-11-19 16:32:39,968 | INFO     | [job] validate thread has finished
[2025-11-19 17:33:25] 2025-11-19 16:32:40,017 | INFO     | [payload] control thread has finished
[2025-11-19 17:33:25] 2025-11-19 16:32:40,048 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 17:33:25] 2025-11-19 16:32:40,339 | INFO     | [data] copytool_out thread has finished
[2025-11-19 17:33:25] 2025-11-19 16:32:40,649 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 17:33:25] 2025-11-19 16:32:44,656 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 17:33:25] 2025-11-19 16:33:07,625 | INFO     | PID=3095170 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 17:33:25] 2025-11-19 16:33:07,626 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 17:33:25] 2025-11-19 16:33:07,626 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 17:33:25] 2025-11-19 16:33:07,626 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 17:33:25] 2025-11-19 16:33:18,830 | INFO     | [monitor] cgroup control has ended
[2025-11-19 17:33:25] 2025-11-19 16:33:20,518 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140209057302336)>', '<ExcThread(monitor, started 140208116848384)>']
[2025-11-19 17:33:25] 2025-11-19 16:33:20,695 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 17:33:25] 2025-11-19 16:33:20,696 | INFO     | [monitor] control thread has ended
[2025-11-19 17:33:25] 2025-11-19 16:33:25,544 | INFO     | all workflow threads have been joined
[2025-11-19 17:33:25] 2025-11-19 16:33:25,544 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 17:33:25] 2025-11-19 16:33:25,545 | INFO     | traces error code: 0
[2025-11-19 17:33:25] 2025-11-19 16:33:25,545 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 17:33:25] 2025-11-19 16:33:25,590 [wrapper] ==== pilot stdout END ====
[2025-11-19 17:33:25] 2025-11-19 16:33:25,593 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 17:33:25] 2025-11-19 16:33:25,596 [wrapper] pilotpid: 3095170
[2025-11-19 17:33:25] 2025-11-19 16:33:25,599 [wrapper] Pilot exit status: 0
[2025-11-19 17:33:25] 2025-11-19 16:33:25,606 [wrapper] pandaids: 6892523372
[2025-11-19 17:33:25] 2025-11-19 16:33:25,623 [wrapper] cleanup supervisor_pilot 3095176 3095171
[2025-11-19 17:33:25] 2025-11-19 16:33:25,625 [wrapper] Test setup, not cleaning
[2025-11-19 17:33:25] 2025-11-19 16:33:25,628 [wrapper] apfmon messages muted
[2025-11-19 17:33:25] 2025-11-19 16:33:25,630 [wrapper] ==== wrapper stdout END ====
[2025-11-19 17:33:25] 2025-11-19 16:33:25,633 [wrapper] ==== wrapper stderr END ====
[2025-11-19 17:33:25]  *** Error codes and diagnostics ***
[2025-11-19 17:33:25]     "exeErrorCode": 65,
[2025-11-19 17:33:25]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 17:33:25]     "pilotErrorCode": 1305,
[2025-11-19 17:33:25]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 17:33:25]  *** Listing of results directory ***
[2025-11-19 17:33:25] total 403644
[2025-11-19 17:33:25] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-19 17:33:25] -rwx------ 1 boinc boinc     36292 Nov 19 08:07 runpilot2-wrapper.sh
[2025-11-19 17:33:25] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:07 queuedata.json
[2025-11-19 17:33:25] -rw-r--r-- 1 boinc boinc       100 Nov 19 17:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 17:33:25] -rwxr-xr-x 1 boinc boinc      7986 Nov 19 17:29 run_atlas
[2025-11-19 17:33:25] -rw-r--r-- 1 boinc boinc       105 Nov 19 17:29 job.xml
[2025-11-19 17:33:25] -rw-r--r-- 2 boinc boinc 409126190 Nov 19 17:29 EVNT.47493027._000074.pool.root.1
[2025-11-19 17:33:25] -rw-r--r-- 2 boinc boinc    590097 Nov 19 17:29 input.tar.gz
[2025-11-19 17:33:25] -rw-r--r-- 2 boinc boinc     15120 Nov 19 17:29 start_atlas.sh
[2025-11-19 17:33:25] drwxrwx--x 2 boinc boinc      4096 Nov 19 17:29 shared
[2025-11-19 17:33:25] -rw-r--r-- 1 boinc boinc         0 Nov 19 17:29 boinc_setup_complete
[2025-11-19 17:33:25] -rw-r--r-- 1 boinc boinc      6194 Nov 19 17:29 init_data.xml
[2025-11-19 17:33:25] -rw-r--r-- 1 boinc boinc         0 Nov 19 17:29 boinc_lockfile
[2025-11-19 17:33:25] -rw-r--r-- 1 boinc boinc      2771 Nov 19 17:29 pandaJob.out
[2025-11-19 17:33:25] -rw------- 1 boinc boinc    989426 Nov 19 17:29 agis_schedconf.cvmfs.json
[2025-11-19 17:33:25] -rw------- 1 boinc boinc   1525063 Nov 19 17:29 agis_ddmendpoints.agis.ALL.json
[2025-11-19 17:33:25] drwx------ 5 boinc boinc      4096 Nov 19 17:29 pilot3
[2025-11-19 17:33:25] -rw-r--r-- 1 boinc boinc       524 Nov 19 17:30 boinc_task_state.xml
[2025-11-19 17:33:25] -rw------- 1 boinc boinc       952 Nov 19 17:30 memory_monitor_summary.json
[2025-11-19 17:33:25] -rw------- 1 boinc boinc     55747 Nov 19 17:30 log.47493029._000694.job.log.tgz.1
[2025-11-19 17:33:25] -rw------- 1 boinc boinc        95 Nov 19 17:32 pilot_heartbeat.json
[2025-11-19 17:33:25] -rw------- 1 boinc boinc      8401 Nov 19 17:32 heartbeat.json
[2025-11-19 17:33:25] -rw-r--r-- 1 boinc boinc        23 Nov 19 17:33 wrapper_checkpoint.txt
[2025-11-19 17:33:25] -rw-r--r-- 1 boinc boinc      8192 Nov 19 17:33 boinc_mmap_file
[2025-11-19 17:33:25] -rw------- 1 boinc boinc      4752 Nov 19 17:33 pilotlog.txt
[2025-11-19 17:33:25] -rw------- 1 boinc boinc     93770 Nov 19 17:33 log.47493029._000694.job.log.1
[2025-11-19 17:33:25] -rw------- 1 boinc boinc       186 Nov 19 17:33 output.list
[2025-11-19 17:33:25] -rw-r--r-- 1 boinc boinc       620 Nov 19 17:33 runtime_log
[2025-11-19 17:33:25] -rw------- 1 boinc boinc    174080 Nov 19 17:33 result.tar.gz
[2025-11-19 17:33:25] -rw-r--r-- 1 boinc boinc      8624 Nov 19 17:33 runtime_log.err
[2025-11-19 17:33:25] -rw------- 1 boinc boinc       649 Nov 19 17:33 HfYKDmvSrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmifGKDm1xEGMn.diag
[2025-11-19 17:33:25] -rw-r--r-- 1 boinc boinc      7895 Nov 19 17:33 stderr.txt
[2025-11-19 17:33:25] No HITS result produced
[2025-11-19 17:33:25]  *** Contents of shared directory: ***
[2025-11-19 17:33:25] total 400312
[2025-11-19 17:33:25] -rw-r--r-- 2 boinc boinc 409126190 Nov 19 17:29 ATLAS.root_0
[2025-11-19 17:33:25] -rw-r--r-- 2 boinc boinc    590097 Nov 19 17:29 input.tar.gz
[2025-11-19 17:33:25] -rw-r--r-- 2 boinc boinc     15120 Nov 19 17:29 start_atlas.sh
[2025-11-19 17:33:25] -rw------- 1 boinc boinc    174080 Nov 19 17:33 result.tar.gz
17:33:27 (3091441): run_atlas exited; CPU time 32.680300
17:33:27 (3091441): called boinc_finish(0)

</stderr_txt>
]]>

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