Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
14:31:54 (2906033): wrapper (7.7.26015): starting
14:31:54 (2906033): wrapper: running run_atlas (--nthreads 4)
[2025-11-20 14:31:54] Arguments: --nthreads 4
[2025-11-20 14:31:54] Threads: 4
[2025-11-20 14:31:54] Checking for CVMFS
[2025-11-20 14:31:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 14:31:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 14:31:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 14:31:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 14:31:54] 2.13.3.0 2900166 0 24740 153084 3 4 3319530 4096000 285 130560 0 10839 99.982 2266 980 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.178:3128 1
[2025-11-20 14:31:54] CVMFS is ok
[2025-11-20 14:31:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 14:31:54] Checking for apptainer binary...
[2025-11-20 14:31:54] apptainer is not installed, using version from CVMFS
[2025-11-20 14:31:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 14:31:54] senture-z10pe-l
[2025-11-20 14:31:54] apptainer works
[2025-11-20 14:31:54] Set ATHENA_PROC_NUMBER=4
[2025-11-20 14:31:54] Set ATHENA_CORE_NUMBER=4
[2025-11-20 14:31:54] Starting ATLAS job with PandaID=6892522117
[2025-11-20 14:31:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 20:12:18]  *** The last 200 lines of the pilot log: ***
[2025-11-21 20:12:18] 2025-11-21 20:11:18,071 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 20:12:18] 2025-11-21 20:11:18,075 | INFO     | found 36 cores (18 cores per socket, 2 sockets) HT, CPU MHz: 2294.962
[2025-11-21 20:12:18] 2025-11-21 20:11:18,082 | INFO     | using path: /var/lib/boinc-client/slots/16/PanDA_Pilot-6892522117/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 20:12:18] 2025-11-21 20:11:18,083 | INFO     | extracted standard info from prmon json
[2025-11-21 20:12:18] 2025-11-21 20:11:18,083 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 20:12:18] 2025-11-21 20:11:18,083 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 20:12:18] 2025-11-21 20:11:18,104 | INFO     | fitting pss+swap vs Time
[2025-11-21 20:12:18] 2025-11-21 20:11:18,106 | INFO     | sum of square deviations: 1661851950302.7166
[2025-11-21 20:12:18] 2025-11-21 20:11:18,159 | INFO     | sum of deviations: 2647375629618.0522
[2025-11-21 20:12:18] 2025-11-21 20:11:18,159 | INFO     | mean x: 1763702510.521143
[2025-11-21 20:12:18] 2025-11-21 20:11:18,159 | INFO     | mean y: 2247040.5525714285
[2025-11-21 20:12:18] 2025-11-21 20:11:18,160 | INFO     | intersect: -2807379318.401564
[2025-11-21 20:12:18] 2025-11-21 20:11:18,161 | INFO     | chi2: 5.856880714699942
[2025-11-21 20:12:18] 2025-11-21 20:11:18,163 | INFO     | sum of square deviations: 1647648169690.216
[2025-11-21 20:12:18] 2025-11-21 20:11:18,215 | INFO     | sum of deviations: 3123540065662.199
[2025-11-21 20:12:18] 2025-11-21 20:11:18,216 | INFO     | mean x: 1763702358.0212035
[2025-11-21 20:12:18] 2025-11-21 20:11:18,216 | INFO     | mean y: 2252153.210888252
[2025-11-21 20:12:18] 2025-11-21 20:11:18,216 | INFO     | intersect: -3341298418.1576967
[2025-11-21 20:12:18] 2025-11-21 20:11:18,217 | INFO     | chi2: 2.5491222163291
[2025-11-21 20:12:18] 2025-11-21 20:11:18,217 | INFO     | current chi2=2.5491222163291 (change=56.47645324359836 %)
[2025-11-21 20:12:18] 2025-11-21 20:11:18,219 | INFO     | sum of square deviations: 1633525553390.212
[2025-11-21 20:12:18] 2025-11-21 20:11:18,271 | INFO     | sum of deviations: 3206846787942.98
[2025-11-21 20:12:18] 2025-11-21 20:11:18,272 | INFO     | mean x: 1763702205.5212643
[2025-11-21 20:12:18] 2025-11-21 20:11:18,272 | INFO     | mean y: 2253052.027586207
[2025-11-21 20:12:18] 2025-11-21 20:11:18,272 | INFO     | intersect: -3460149321.125095
[2025-11-21 20:12:18] 2025-11-21 20:11:18,274 | INFO     | chi2: 2.3689402185556103
[2025-11-21 20:12:18] 2025-11-21 20:11:18,274 | INFO     | current chi2=2.3689402185556103 (change=7.06839384236992 %)
[2025-11-21 20:12:18] 2025-11-21 20:11:18,274 | INFO     | right removable region: 1739
[2025-11-21 20:12:18] 2025-11-21 20:11:18,275 | INFO     | sum of square deviations: 1647648147120.2158
[2025-11-21 20:12:18] 2025-11-21 20:11:18,328 | INFO     | sum of deviations: 2295466590729.676
[2025-11-21 20:12:18] 2025-11-21 20:11:18,328 | INFO     | mean x: 1763702663.0212035
[2025-11-21 20:12:18] 2025-11-21 20:11:18,328 | INFO     | mean y: 2250815.981661891
[2025-11-21 20:12:18] 2025-11-21 20:11:18,328 | INFO     | intersect: -2454900333.687154
[2025-11-21 20:12:18] 2025-11-21 20:11:18,329 | INFO     | chi2: 3.8150301303402485
[2025-11-21 20:12:18] 2025-11-21 20:11:18,330 | INFO     | current chi2=3.8150301303402485 (change=34.862423938990894 %)
[2025-11-21 20:12:18] 2025-11-21 20:11:18,331 | INFO     | sum of square deviations: 1633525508250.2124
[2025-11-21 20:12:18] 2025-11-21 20:11:18,384 | INFO     | sum of deviations: 2212490443059.751
[2025-11-21 20:12:18] 2025-11-21 20:11:18,384 | INFO     | mean x: 1763702815.5212643
[2025-11-21 20:12:18] 2025-11-21 20:11:18,384 | INFO     | mean y: 2251711.858045977
[2025-11-21 20:12:18] 2025-11-21 20:11:18,385 | INFO     | intersect: -2386554342.305305
[2025-11-21 20:12:18] 2025-11-21 20:11:18,386 | INFO     | chi2: 3.7584176265817857
[2025-11-21 20:12:18] 2025-11-21 20:11:18,386 | INFO     | current chi2=3.7584176265817857 (change=1.4839333327470672 %)
[2025-11-21 20:12:18] 2025-11-21 20:11:18,386 | INFO     | left removable region: 20
[2025-11-21 20:12:18] 2025-11-21 20:11:18,388 | INFO     | sum of square deviations: 1575091540472.2031
[2025-11-21 20:12:18] 2025-11-21 20:11:18,405 | INFO     | time since job start (106744s) is within the limit (172800.0s)
[2025-11-21 20:12:18] 2025-11-21 20:11:18,438 | INFO     | sum of deviations: 2642627993293.6924
[2025-11-21 20:12:18] 2025-11-21 20:11:18,439 | INFO     | mean x: 1763702785.0215242
[2025-11-21 20:12:18] 2025-11-21 20:11:18,439 | INFO     | mean y: 2259135.3327515996
[2025-11-21 20:12:18] 2025-11-21 20:11:18,439 | INFO     | intersect: -2956813548.2464156
[2025-11-21 20:12:18] 2025-11-21 20:11:18,440 | INFO     | chi2: 0.21289694091594055
[2025-11-21 20:12:18] 2025-11-21 20:11:18,440 | INFO     | current memory leak: 1.68 B/s (using 1719 data points, chi2=0.21)
[2025-11-21 20:12:18] 2025-11-21 20:11:18,441 | INFO     | could have reported an average CPU frequency of 2294 MHz (62 samples)
[2025-11-21 20:12:18] 2025-11-21 20:11:18,441 | INFO     | ..............................
[2025-11-21 20:12:18] 2025-11-21 20:11:18,442 | INFO     | . Timing measurements:
[2025-11-21 20:12:18] 2025-11-21 20:11:18,442 | INFO     | . get job = 0 s
[2025-11-21 20:12:18] 2025-11-21 20:11:18,442 | INFO     | . initial setup = 1 s
[2025-11-21 20:12:18] 2025-11-21 20:11:18,442 | INFO     | . payload setup = 8 s
[2025-11-21 20:12:18] 2025-11-21 20:11:18,442 | INFO     | . stage-in = 0 s
[2025-11-21 20:12:18] 2025-11-21 20:11:18,442 | INFO     | . payload execution = 106701 s
[2025-11-21 20:12:18] 2025-11-21 20:11:18,442 | INFO     | . stage-out = 2 s
[2025-11-21 20:12:18] 2025-11-21 20:11:18,442 | INFO     | . log creation = 0 s
[2025-11-21 20:12:18] 2025-11-21 20:11:18,442 | INFO     | ..............................
[2025-11-21 20:12:18] 2025-11-21 20:11:18,500 | INFO     | 
[2025-11-21 20:12:18] 2025-11-21 20:11:18,501 | INFO     | job summary report
[2025-11-21 20:12:18] 2025-11-21 20:11:18,501 | INFO     | --------------------------------------------------
[2025-11-21 20:12:18] 2025-11-21 20:11:18,501 | INFO     | PanDA job id: 6892522117
[2025-11-21 20:12:18] 2025-11-21 20:11:18,501 | INFO     | task id: 47493029
[2025-11-21 20:12:18] 2025-11-21 20:11:18,501 | INFO     | errors: (none)
[2025-11-21 20:12:18] 2025-11-21 20:11:18,501 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 20:12:18] 2025-11-21 20:11:18,501 | INFO     | pilot state: finished 
[2025-11-21 20:12:18] 2025-11-21 20:11:18,502 | INFO     | transexitcode: 0
[2025-11-21 20:12:18] 2025-11-21 20:11:18,502 | INFO     | exeerrorcode: 0
[2025-11-21 20:12:18] 2025-11-21 20:11:18,502 | INFO     | exeerrordiag: 
[2025-11-21 20:12:18] 2025-11-21 20:11:18,502 | INFO     | exitcode: 0
[2025-11-21 20:12:18] 2025-11-21 20:11:18,502 | INFO     | exitmsg: OK
[2025-11-21 20:12:18] 2025-11-21 20:11:18,502 | INFO     | cpuconsumptiontime: 410517 s
[2025-11-21 20:12:18] 2025-11-21 20:11:18,502 | INFO     | nevents: 1000
[2025-11-21 20:12:18] 2025-11-21 20:11:18,502 | INFO     | neventsw: 0
[2025-11-21 20:12:18] 2025-11-21 20:11:18,502 | INFO     | pid: 3095915
[2025-11-21 20:12:18] 2025-11-21 20:11:18,503 | INFO     | pgrp: 3095915
[2025-11-21 20:12:18] 2025-11-21 20:11:18,503 | INFO     | corecount: 4
[2025-11-21 20:12:18] 2025-11-21 20:11:18,503 | INFO     | event service: False
[2025-11-21 20:12:18] 2025-11-21 20:11:18,503 | INFO     | sizes: {0: 2298800, 5: 2299062, 11: 2299118, 106714: 2377825, 106717: 2386835, 106720: 2386891, 106728: 2387265}
[2025-11-21 20:12:18] 2025-11-21 20:11:18,503 | INFO     | --------------------------------------------------
[2025-11-21 20:12:18] 2025-11-21 20:11:18,503 | INFO     | 
[2025-11-21 20:12:18] 2025-11-21 20:11:18,503 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/16
[2025-11-21 20:12:18] 2025-11-21 20:11:18,529 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,530 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,530 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,530 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,530 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,530 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,530 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,530 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,530 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,531 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,531 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,531 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,531 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,531 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,531 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,531 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,531 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,531 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 20:12:18] 2025-11-21 20:11:18,531 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,532 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 20:12:18] 2025-11-21 20:11:18,532 | INFO     | job 6892522117 has completed (purged errors)
[2025-11-21 20:12:18] 2025-11-21 20:11:18,532 | INFO     | overall cleanup function is called
[2025-11-21 20:12:18] 2025-11-21 20:11:19,545 | INFO     | --- collectZombieJob: --- 10, [3095915]
[2025-11-21 20:12:18] 2025-11-21 20:11:19,545 | INFO     | zombie collector waiting for pid 3095915
[2025-11-21 20:12:18] 2025-11-21 20:11:19,545 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 20:12:18] 2025-11-21 20:11:19,545 | INFO     | collected zombie processes
[2025-11-21 20:12:18] 2025-11-21 20:11:19,546 | INFO     | will attempt to kill all subprocesses of pid=3095915
[2025-11-21 20:12:18] 2025-11-21 20:11:20,352 | INFO     | PID=2971704 has CPU usage=17.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-21 20:12:18] 2025-11-21 20:11:20,352 | INFO     | .. there are 10 such processes running
[2025-11-21 20:12:18] 2025-11-21 20:11:20,385 | INFO     | process IDs to be killed: [3095915] (in reverse order)
[2025-11-21 20:12:18] 2025-11-21 20:11:20,488 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 20:12:18] 2025-11-21 20:11:20,488 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 20:12:18] 2025-11-21 20:11:20,494 | INFO     | did not find any defunct processes belonging to 3095915
[2025-11-21 20:12:18] 2025-11-21 20:11:20,498 | INFO     | did not find any defunct processes belonging to 3095915
[2025-11-21 20:12:18] 2025-11-21 20:11:20,500 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 20:12:18] 2025-11-21 20:11:20,501 | INFO     | ready for new job
[2025-11-21 20:12:18] 2025-11-21 20:11:20,501 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 20:12:18] 2025-11-21 20:11:20,506 | INFO     | ***************************************
[2025-11-21 20:12:18] 2025-11-21 20:11:20,506 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 20:12:18] 2025-11-21 20:11:20,506 | INFO     | ***************************************
[2025-11-21 20:12:18] 2025-11-21 20:11:20,506 | INFO     | 
[2025-11-21 20:12:18] 2025-11-21 20:11:20,508 | INFO     | pilot is running in a VM
[2025-11-21 20:12:18] 2025-11-21 20:11:20,508 | INFO     | architecture information:
[2025-11-21 20:12:18] 2025-11-21 20:11:20,509 | INFO     | executing command: cat /etc/os-release
[2025-11-21 20:12:18] 2025-11-21 20:11:20,523 | INFO     | cat /etc/os-release:
[2025-11-21 20:12:18] NAME="CentOS Linux"
[2025-11-21 20:12:18] VERSION="7 (Core)"
[2025-11-21 20:12:18] ID="centos"
[2025-11-21 20:12:18] ID_LIKE="rhel fedora"
[2025-11-21 20:12:18] VERSION_ID="7"
[2025-11-21 20:12:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 20:12:18] ANSI_COLOR="0;31"
[2025-11-21 20:12:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 20:12:18] HOME_URL="https://www.centos.org/"
[2025-11-21 20:12:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 20:12:18] 
[2025-11-21 20:12:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 20:12:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 20:12:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 20:12:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 20:12:18] 
[2025-11-21 20:12:18] 2025-11-21 20:11:20,524 | INFO     | ***************************************
[2025-11-21 20:12:18] 2025-11-21 20:11:21,027 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/16
[2025-11-21 20:12:18] 2025-11-21 20:11:21,043 | INFO     | sufficient remaining disk space (85852160000 B)
[2025-11-21 20:12:18] 2025-11-21 20:11:21,044 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 20:12:18] 2025-11-21 20:11:21,044 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 20:12:18] 2025-11-21 20:11:21,044 | INFO     | update_server=False
[2025-11-21 20:12:18] 2025-11-21 20:11:21,044 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 20:12:18] 2025-11-21 20:11:21,045 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-21 20:12:18] 2025-11-21 20:11:21,045 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 20:12:18] 2025-11-21 20:11:21,046 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 20:12:18] 2025-11-21 20:11:21,046 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 20:12:18] 2025-11-21 20:11:21,046 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 20:12:18] 2025-11-21 20:11:21,046 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 20:12:18] 2025-11-21 20:11:21,047 | INFO     | aborting loop
[2025-11-21 20:12:18] 2025-11-21 20:11:21,110 | INFO     | all job control threads have been joined
[2025-11-21 20:12:18] 2025-11-21 20:11:21,159 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 20:12:18] 2025-11-21 20:11:21,310 | INFO     | all data control threads have been joined
[2025-11-21 20:12:18] 2025-11-21 20:11:21,471 | INFO     | all payload control threads have been joined
[2025-11-21 20:12:18] 2025-11-21 20:11:22,050 | INFO     | [job] retrieve thread has finished
[2025-11-21 20:12:18] 2025-11-21 20:11:22,052 | INFO     | [job] job monitor thread has finished
[2025-11-21 20:12:18] 2025-11-21 20:11:22,116 | INFO     | [job] control thread has finished
[2025-11-21 20:12:18] 2025-11-21 20:11:22,125 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 20:12:18] 2025-11-21 20:11:22,199 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 20:12:18] 2025-11-21 20:11:22,315 | INFO     | [data] control thread has finished
[2025-11-21 20:12:18] 2025-11-21 20:11:22,363 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 20:12:18] 2025-11-21 20:11:22,476 | INFO     | [payload] control thread has finished
[2025-11-21 20:12:18] 2025-11-21 20:11:22,716 | INFO     | [job] validate thread has finished
[2025-11-21 20:12:18] 2025-11-21 20:11:22,880 | INFO     | [payload] failed_post thread has finished
[2025-11-21 20:12:18] 2025-11-21 20:11:23,010 | INFO     | [data] copytool_in thread has finished
[2025-11-21 20:12:18] 2025-11-21 20:11:23,051 | INFO     | [data] copytool_out thread has finished
[2025-11-21 20:12:18] 2025-11-21 20:11:23,275 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 20:12:18] 2025-11-21 20:11:23,279 | INFO     | [payload] validate_post thread has finished
[2025-11-21 20:12:18] 2025-11-21 20:11:23,511 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 20:12:18] 2025-11-21 20:11:24,517 | INFO     | [job] queue monitor thread has finished
[2025-11-21 20:12:18] 2025-11-21 20:11:25,165 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 20:12:18] 2025-11-21 20:12:12,105 | INFO     | [monitor] cgroup control has ended
[2025-11-21 20:12:18] 2025-11-21 20:12:13,484 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136402451179328)>', '<ExcThread(monitor, started 136401760798464)>']
[2025-11-21 20:12:18] 2025-11-21 20:12:14,282 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 20:12:18] 2025-11-21 20:12:14,283 | INFO     | [monitor] control thread has ended
[2025-11-21 20:12:18] 2025-11-21 20:12:18,510 | INFO     | all workflow threads have been joined
[2025-11-21 20:12:18] 2025-11-21 20:12:18,510 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 20:12:18] 2025-11-21 20:12:18,510 | INFO     | traces error code: 0
[2025-11-21 20:12:18] 2025-11-21 20:12:18,510 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 20:12:18] 2025-11-21 20:12:18,614 [wrapper] ==== pilot stdout END ====
[2025-11-21 20:12:18] 2025-11-21 20:12:18,618 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 20:12:18] 2025-11-21 20:12:18,621 [wrapper] pilotpid: 2971704
[2025-11-21 20:12:18] 2025-11-21 20:12:18,624 [wrapper] Pilot exit status: 0
[2025-11-21 20:12:18] 2025-11-21 20:12:18,637 [wrapper] pandaids: 6892522117
[2025-11-21 20:12:18] 2025-11-21 20:12:18,694 [wrapper] cleanup supervisor_pilot 1566765 2971717
[2025-11-21 20:12:18] 2025-11-21 20:12:18,697 [wrapper] Test setup, not cleaning
[2025-11-21 20:12:18] 2025-11-21 20:12:18,701 [wrapper] apfmon messages muted
[2025-11-21 20:12:18] 2025-11-21 20:12:18,704 [wrapper] ==== wrapper stdout END ====
[2025-11-21 20:12:18] 2025-11-21 20:12:18,708 [wrapper] ==== wrapper stderr END ====
[2025-11-21 20:12:18]  *** Error codes and diagnostics ***
[2025-11-21 20:12:18]     "exeErrorCode": 0,
[2025-11-21 20:12:18]     "exeErrorDiag": "",
[2025-11-21 20:12:18]     "pilotErrorCode": 0,
[2025-11-21 20:12:18]     "pilotErrorDiag": "",
[2025-11-21 20:12:18]  *** Listing of results directory ***
[2025-11-21 20:12:18] total 1334204
[2025-11-21 20:12:18] -rw-r--r-- 1 boinc boinc    576529 Nov 19 07:00 pilot3.tar.gz
[2025-11-21 20:12:18] -rw-r--r-- 1 boinc boinc      5112 Nov 19 07:03 queuedata.json
[2025-11-21 20:12:18] -rwx------ 1 boinc boinc     36292 Nov 19 07:04 runpilot2-wrapper.sh
[2025-11-21 20:12:18] -rw-r--r-- 1 boinc boinc       100 Nov 20 14:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 20:12:18] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 14:31 run_atlas
[2025-11-21 20:12:18] -rw-r--r-- 1 boinc boinc       105 Nov 20 14:31 job.xml
[2025-11-21 20:12:18] -rw-r--r-- 2 boinc boinc 409067826 Nov 20 14:31 EVNT.47493027._000022.pool.root.1
[2025-11-21 20:12:18] drwxrwx--x 2 boinc boinc      4096 Nov 20 14:31 shared
[2025-11-21 20:12:18] -rw-r--r-- 2 boinc boinc    590094 Nov 20 14:31 input.tar.gz
[2025-11-21 20:12:18] -rw-r--r-- 2 boinc boinc     15120 Nov 20 14:31 start_atlas.sh
[2025-11-21 20:12:18] -rw-r--r-- 1 boinc boinc         0 Nov 20 14:31 boinc_setup_complete
[2025-11-21 20:12:18] -rw-r--r-- 1 boinc boinc      6530 Nov 20 14:31 init_data.xml
[2025-11-21 20:12:18] -rw-r--r-- 1 boinc boinc         0 Nov 20 14:31 boinc_lockfile
[2025-11-21 20:12:18] -rw-r--r-- 1 boinc boinc      2771 Nov 20 14:31 pandaJob.out
[2025-11-21 20:12:18] -rw------- 1 boinc boinc    989440 Nov 20 14:32 agis_schedconf.cvmfs.json
[2025-11-21 20:12:18] drwx------ 5 boinc boinc      4096 Nov 20 14:32 pilot3
[2025-11-21 20:12:18] -rw-r--r-- 1 boinc boinc       534 Nov 21 20:01 boinc_task_state.xml
[2025-11-21 20:12:18] -rw------- 1 boinc boinc 919670443 Nov 21 20:10 HITS.47493029._000173.pool.root.1
[2025-11-21 20:12:18] -rw------- 1 boinc boinc      1047 Nov 21 20:11 memory_monitor_summary.json
[2025-11-21 20:12:18] -rw------- 1 boinc boinc        95 Nov 21 20:11 pilot_heartbeat.json
[2025-11-21 20:12:18] -rw------- 1 boinc boinc   1526164 Nov 21 20:11 agis_ddmendpoints.agis.ALL.json
[2025-11-21 20:12:18] -rw------- 1 boinc boinc   2276975 Nov 21 20:11 log.47493029._000173.job.log.tgz.1
[2025-11-21 20:12:18] -rw------- 1 boinc boinc      8616 Nov 21 20:11 heartbeat.json
[2025-11-21 20:12:18] -rw-r--r-- 1 boinc boinc        30 Nov 21 20:12 wrapper_checkpoint.txt
[2025-11-21 20:12:18] -rw-r--r-- 1 boinc boinc      8192 Nov 21 20:12 boinc_mmap_file
[2025-11-21 20:12:18] -rw------- 1 boinc boinc      4622 Nov 21 20:12 pilotlog.txt
[2025-11-21 20:12:18] -rw------- 1 boinc boinc  14502730 Nov 21 20:12 log.47493029._000173.job.log.1
[2025-11-21 20:12:18] -rw------- 1 boinc boinc       353 Nov 21 20:12 output.list
[2025-11-21 20:12:18] -rw-r--r-- 1 boinc boinc       620 Nov 21 20:12 runtime_log
[2025-11-21 20:12:18] -rw------- 1 boinc boinc  16803840 Nov 21 20:12 result.tar.gz
[2025-11-21 20:12:18] -rw------- 1 boinc boinc       665 Nov 21 20:12 YUGLDm7Prf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyaGKDmQocMAn.diag
[2025-11-21 20:12:18] -rw-r--r-- 1 boinc boinc      8808 Nov 21 20:12 runtime_log.err
[2025-11-21 20:12:18] -rw-r--r-- 1 boinc boinc     21018 Nov 21 20:12 stderr.txt
[2025-11-21 20:12:18] HITS file was successfully produced:
[2025-11-21 20:12:18] -rw------- 1 boinc boinc 919670443 Nov 21 20:10 shared/HITS.pool.root.1
[2025-11-21 20:12:18]  *** Contents of shared directory: ***
[2025-11-21 20:12:18] total 1314616
[2025-11-21 20:12:18] -rw-r--r-- 2 boinc boinc 409067826 Nov 20 14:31 ATLAS.root_0
[2025-11-21 20:12:18] -rw-r--r-- 2 boinc boinc    590094 Nov 20 14:31 input.tar.gz
[2025-11-21 20:12:18] -rw-r--r-- 2 boinc boinc     15120 Nov 20 14:31 start_atlas.sh
[2025-11-21 20:12:18] -rw------- 1 boinc boinc 919670443 Nov 21 20:10 HITS.pool.root.1
[2025-11-21 20:12:18] -rw------- 1 boinc boinc  16803840 Nov 21 20:12 result.tar.gz
20:12:20 (2906033): run_atlas exited; CPU time 417606.508717
20:12:20 (2906033): called boinc_finish(0)

</stderr_txt>
]]>

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