Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:25:01 (4113): wrapper (7.7.26015): starting
21:25:01 (4113): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 21:25:01] Arguments: --nthreads 8
[2025-11-21 21:25:01] Threads: 8
[2025-11-21 21:25:01] Checking for CVMFS
[2025-11-21 21:25:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:25:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:25:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:25:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:25:04] 2.11.2.0 6477 278500 143780 153142 0 236 16381592 25165824 4583 130560 13 128023082 99.872 75634948 2776 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 21:25:04] CVMFS is ok
[2025-11-21 21:25:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:25:04] Checking for apptainer binary...
[2025-11-21 21:25:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 21:25:04] Running /usr/bin/apptainer --version
[2025-11-21 21:25:04] apptainer version 1.3.2-1.el7
[2025-11-21 21:25:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:25:09] cg-vwn261.simple-grid.lan
[2025-11-21 21:25:09] apptainer works
[2025-11-21 21:25:09] Set ATHENA_PROC_NUMBER=8
[2025-11-21 21:25:09] Set ATHENA_CORE_NUMBER=8
[2025-11-21 21:25:09] Starting ATLAS job with PandaID=6891596466
[2025-11-21 21:25:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 23:15:16]  *** The last 200 lines of the pilot log: ***
[2025-11-22 23:15:16] 2025-11-22 22:14:31,757 | INFO     | PID=7933 has CPU usage=16.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 23:15:16] 2025-11-22 22:14:31,757 | INFO     | .. there are 9 such processes running
[2025-11-22 23:15:16] 2025-11-22 22:14:32,765 | INFO     | time since job start (92769s) is within the limit (172800.0s)
[2025-11-22 23:15:16] 2025-11-22 22:14:33,204 | INFO     | monitor loop #6195: job 0:6891596466 is in state 'finished'
[2025-11-22 23:15:16] 2025-11-22 22:14:33,205 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:15:16] 2025-11-22 22:14:34,774 | INFO     | time since job start (92771s) is within the limit (172800.0s)
[2025-11-22 23:15:16] 2025-11-22 22:14:35,711 | INFO     | monitor loop #6196: job 0:6891596466 is in state 'finished'
[2025-11-22 23:15:16] 2025-11-22 22:14:35,712 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:15:16] 2025-11-22 22:14:36,781 | INFO     | time since job start (92773s) is within the limit (172800.0s)
[2025-11-22 23:15:16] 2025-11-22 22:14:38,216 | INFO     | monitor loop #6197: job 0:6891596466 is in state 'finished'
[2025-11-22 23:15:16] 2025-11-22 22:14:38,217 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:15:16] 2025-11-22 22:14:38,788 | INFO     | time since job start (92775s) is within the limit (172800.0s)
[2025-11-22 23:15:16] 2025-11-22 22:14:40,721 | INFO     | monitor loop #6198: job 0:6891596466 is in state 'finished'
[2025-11-22 23:15:16] 2025-11-22 22:14:40,722 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:15:16] 2025-11-22 22:14:40,795 | INFO     | time since job start (92777s) is within the limit (172800.0s)
[2025-11-22 23:15:16] 2025-11-22 22:14:42,318 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 23:15:16] 2025-11-22 22:14:42,319 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 23:15:16] 2025-11-22 22:14:42,321 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6891596466/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 23:15:16] 2025-11-22 22:14:42,322 | INFO     | extracted standard info from prmon json
[2025-11-22 23:15:16] 2025-11-22 22:14:42,322 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 23:15:16] 2025-11-22 22:14:42,322 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 23:15:16] 2025-11-22 22:14:42,350 | INFO     | fitting pss+swap vs Time
[2025-11-22 23:15:16] 2025-11-22 22:14:42,353 | INFO     | sum of square deviations: 1073976488094.8121
[2025-11-22 23:15:16] 2025-11-22 22:14:42,417 | INFO     | sum of deviations: 3199746651899.5444
[2025-11-22 23:15:16] 2025-11-22 22:14:42,417 | INFO     | mean x: 1763803525.3192334
[2025-11-22 23:15:16] 2025-11-22 22:14:42,417 | INFO     | mean y: 2849740.9781890283
[2025-11-22 23:15:16] 2025-11-22 22:14:42,417 | INFO     | intersect: -5252129755.603298
[2025-11-22 23:15:16] 2025-11-22 22:14:42,419 | INFO     | chi2: 22.7510921323493
[2025-11-22 23:15:16] 2025-11-22 22:14:42,422 | INFO     | sum of square deviations: 1063364749051.0782
[2025-11-22 23:15:16] 2025-11-22 22:14:42,481 | INFO     | sum of deviations: 3692214661242.995
[2025-11-22 23:15:16] 2025-11-22 22:14:42,481 | INFO     | mean x: 1763803372.8236074
[2025-11-22 23:15:16] 2025-11-22 22:14:42,481 | INFO     | mean y: 2856817.0450928384
[2025-11-22 23:15:16] 2025-11-22 22:14:42,481 | INFO     | intersect: -6121420556.735286
[2025-11-22 23:15:16] 2025-11-22 22:14:42,483 | INFO     | chi2: 19.614490778999773
[2025-11-22 23:15:16] 2025-11-22 22:14:42,483 | INFO     | current chi2=19.614490778999773 (change=13.786596859188393 %)
[2025-11-22 23:15:16] 2025-11-22 22:14:42,483 | INFO     | right removable region: 1507
[2025-11-22 23:15:16] 2025-11-22 22:14:42,485 | INFO     | sum of square deviations: 1063363531491.0785
[2025-11-22 23:15:16] 2025-11-22 22:14:42,546 | INFO     | sum of deviations: 2559075881461.0806
[2025-11-22 23:15:16] 2025-11-22 22:14:42,546 | INFO     | mean x: 1763803677.8236074
[2025-11-22 23:15:16] 2025-11-22 22:14:42,547 | INFO     | mean y: 2858946.733421751
[2025-11-22 23:15:16] 2025-11-22 22:14:42,547 | INFO     | intersect: -4241886446.42624
[2025-11-22 23:15:16] 2025-11-22 22:14:42,548 | INFO     | chi2: 18.05781659619656
[2025-11-22 23:15:16] 2025-11-22 22:14:42,549 | INFO     | current chi2=18.05781659619656 (change=20.62879227445732 %)
[2025-11-22 23:15:16] 2025-11-22 22:14:42,549 | INFO     | left removable region: 10
[2025-11-22 23:15:16] 2025-11-22 22:14:42,551 | INFO     | sum of square deviations: 1040263056378.6669
[2025-11-22 23:15:16] 2025-11-22 22:14:42,609 | INFO     | sum of deviations: 2663709711371.334
[2025-11-22 23:15:16] 2025-11-22 22:14:42,610 | INFO     | mean x: 1763803647.3333333
[2025-11-22 23:15:16] 2025-11-22 22:14:42,610 | INFO     | mean y: 2874849.945223781
[2025-11-22 23:15:16] 2025-11-22 22:14:42,610 | INFO     | intersect: -4513541334.927694
[2025-11-22 23:15:16] 2025-11-22 22:14:42,612 | INFO     | chi2: 11.36897111701885
[2025-11-22 23:15:16] 2025-11-22 22:14:42,612 | INFO     | current memory leak: 2.56 B/s (using 1497 data points, chi2=11.37)
[2025-11-22 23:15:16] 2025-11-22 22:14:42,614 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-22 23:15:16] 2025-11-22 22:14:42,615 | INFO     | ..............................
[2025-11-22 23:15:16] 2025-11-22 22:14:42,615 | INFO     | . Timing measurements:
[2025-11-22 23:15:16] 2025-11-22 22:14:42,615 | INFO     | . get job = 0 s
[2025-11-22 23:15:16] 2025-11-22 22:14:42,615 | INFO     | . initial setup = 5 s
[2025-11-22 23:15:16] 2025-11-22 22:14:42,615 | INFO     | . payload setup = 143 s
[2025-11-22 23:15:16] 2025-11-22 22:14:42,616 | INFO     | . stage-in = 0 s
[2025-11-22 23:15:16] 2025-11-22 22:14:42,616 | INFO     | . payload execution = 92404 s
[2025-11-22 23:15:16] 2025-11-22 22:14:42,616 | INFO     | . stage-out = 4 s
[2025-11-22 23:15:16] 2025-11-22 22:14:42,616 | INFO     | . log creation = 1 s
[2025-11-22 23:15:16] 2025-11-22 22:14:42,616 | INFO     | ..............................
[2025-11-22 23:15:16] 2025-11-22 22:14:42,803 | INFO     | time since job start (92779s) is within the limit (172800.0s)
[2025-11-22 23:15:16] 2025-11-22 22:14:43,118 | INFO     | 
[2025-11-22 23:15:16] 2025-11-22 22:14:43,119 | INFO     | job summary report
[2025-11-22 23:15:16] 2025-11-22 22:14:43,119 | INFO     | --------------------------------------------------
[2025-11-22 23:15:16] 2025-11-22 22:14:43,119 | INFO     | PanDA job id: 6891596466
[2025-11-22 23:15:16] 2025-11-22 22:14:43,119 | INFO     | task id: 47493068
[2025-11-22 23:15:16] 2025-11-22 22:14:43,120 | INFO     | errors: (none)
[2025-11-22 23:15:16] 2025-11-22 22:14:43,120 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 23:15:16] 2025-11-22 22:14:43,120 | INFO     | pilot state: finished 
[2025-11-22 23:15:16] 2025-11-22 22:14:43,120 | INFO     | transexitcode: 0
[2025-11-22 23:15:16] 2025-11-22 22:14:43,120 | INFO     | exeerrorcode: 0
[2025-11-22 23:15:16] 2025-11-22 22:14:43,120 | INFO     | exeerrordiag: 
[2025-11-22 23:15:16] 2025-11-22 22:14:43,120 | INFO     | exitcode: 0
[2025-11-22 23:15:16] 2025-11-22 22:14:43,120 | INFO     | exitmsg: OK
[2025-11-22 23:15:16] 2025-11-22 22:14:43,120 | INFO     | cpuconsumptiontime: 342993 s
[2025-11-22 23:15:16] 2025-11-22 22:14:43,120 | INFO     | nevents: 1000
[2025-11-22 23:15:16] 2025-11-22 22:14:43,120 | INFO     | neventsw: 0
[2025-11-22 23:15:16] 2025-11-22 22:14:43,121 | INFO     | pid: 14471
[2025-11-22 23:15:16] 2025-11-22 22:14:43,121 | INFO     | pgrp: 14471
[2025-11-22 23:15:16] 2025-11-22 22:14:43,121 | INFO     | corecount: 8
[2025-11-22 23:15:16] 2025-11-22 22:14:43,121 | INFO     | event service: False
[2025-11-22 23:15:16] 2025-11-22 22:14:43,121 | INFO     | sizes: {0: 2297968, 1: 2298653, 2: 2298852, 13: 2298852, 24: 2298908, 34: 2298936, 45: 2299092, 56: 2299120, 67: 2299148, 77: 2299176, 88: 2299232, 99: 2299540, 10
[2025-11-22 23:15:16] 2025-11-22 22:14:43,121 | INFO     | --------------------------------------------------
[2025-11-22 23:15:16] 2025-11-22 22:14:43,121 | INFO     | 
[2025-11-22 23:15:16] 2025-11-22 22:14:43,121 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-22 23:15:16] 2025-11-22 22:14:43,254 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,254 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,254 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,255 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,255 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,255 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,255 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,255 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,255 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,255 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,255 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,255 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,255 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,256 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,256 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,256 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,256 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,256 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 23:15:16] 2025-11-22 22:14:43,256 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,256 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 23:15:16] 2025-11-22 22:14:43,256 | INFO     | job 6891596466 has completed (purged errors)
[2025-11-22 23:15:16] 2025-11-22 22:14:43,256 | INFO     | overall cleanup function is called
[2025-11-22 23:15:16] 2025-11-22 22:14:44,275 | INFO     | --- collectZombieJob: --- 10, [14471]
[2025-11-22 23:15:16] 2025-11-22 22:14:44,276 | INFO     | zombie collector waiting for pid 14471
[2025-11-22 23:15:16] 2025-11-22 22:14:44,276 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 23:15:16] 2025-11-22 22:14:44,276 | INFO     | collected zombie processes
[2025-11-22 23:15:16] 2025-11-22 22:14:44,276 | INFO     | will attempt to kill all subprocesses of pid=14471
[2025-11-22 23:15:16] 2025-11-22 22:14:44,397 | INFO     | process IDs to be killed: [14471] (in reverse order)
[2025-11-22 23:15:16] 2025-11-22 22:14:44,462 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 23:15:16] 2025-11-22 22:14:44,462 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 23:15:16] 2025-11-22 22:14:44,466 | INFO     | did not find any defunct processes belonging to 14471
[2025-11-22 23:15:16] 2025-11-22 22:14:44,470 | INFO     | did not find any defunct processes belonging to 14471
[2025-11-22 23:15:16] 2025-11-22 22:14:44,472 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 23:15:16] 2025-11-22 22:14:44,473 | INFO     | ready for new job
[2025-11-22 23:15:16] 2025-11-22 22:14:44,473 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 23:15:16] 2025-11-22 22:14:44,480 | INFO     | ***************************************
[2025-11-22 23:15:16] 2025-11-22 22:14:44,480 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 23:15:16] 2025-11-22 22:14:44,480 | INFO     | ***************************************
[2025-11-22 23:15:16] 2025-11-22 22:14:44,481 | INFO     | 
[2025-11-22 23:15:16] 2025-11-22 22:14:44,481 | INFO     | pilot is running in a VM
[2025-11-22 23:15:16] 2025-11-22 22:14:44,481 | INFO     | architecture information:
[2025-11-22 23:15:16] 2025-11-22 22:14:44,482 | INFO     | executing command: cat /etc/os-release
[2025-11-22 23:15:16] 2025-11-22 22:14:44,501 | INFO     | cat /etc/os-release:
[2025-11-22 23:15:16] NAME="CentOS Linux"
[2025-11-22 23:15:16] VERSION="7 (Core)"
[2025-11-22 23:15:16] ID="centos"
[2025-11-22 23:15:16] ID_LIKE="rhel fedora"
[2025-11-22 23:15:16] VERSION_ID="7"
[2025-11-22 23:15:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 23:15:16] ANSI_COLOR="0;31"
[2025-11-22 23:15:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 23:15:16] HOME_URL="https://www.centos.org/"
[2025-11-22 23:15:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 23:15:16] 
[2025-11-22 23:15:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 23:15:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 23:15:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 23:15:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 23:15:16] 
[2025-11-22 23:15:16] 2025-11-22 22:14:44,502 | INFO     | ***************************************
[2025-11-22 23:15:16] 2025-11-22 22:14:45,005 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-22 23:15:16] 2025-11-22 22:14:45,031 | INFO     | sufficient remaining disk space (495145975808 B)
[2025-11-22 23:15:16] 2025-11-22 22:14:45,031 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 23:15:16] 2025-11-22 22:14:45,031 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 23:15:16] 2025-11-22 22:14:45,031 | INFO     | update_server=False
[2025-11-22 23:15:16] 2025-11-22 22:14:45,032 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 23:15:16] 2025-11-22 22:14:45,032 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:15:16] 2025-11-22 22:14:45,033 | INFO     | aborting loop
[2025-11-22 23:15:16] 2025-11-22 22:14:45,213 | INFO     | all data control threads have been joined
[2025-11-22 23:15:16] 2025-11-22 22:14:46,020 | INFO     | all job control threads have been joined
[2025-11-22 23:15:16] 2025-11-22 22:14:46,036 | INFO     | [job] retrieve thread has finished
[2025-11-22 23:15:16] 2025-11-22 22:14:46,038 | INFO     | [job] job monitor thread has finished
[2025-11-22 23:15:16] 2025-11-22 22:14:46,157 | INFO     | all payload control threads have been joined
[2025-11-22 23:15:16] 2025-11-22 22:14:46,219 | INFO     | [data] control thread has finished
[2025-11-22 23:15:16] 2025-11-22 22:14:46,246 | INFO     | [job] validate thread has finished
[2025-11-22 23:15:16] 2025-11-22 22:14:46,279 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 23:15:16] 2025-11-22 22:14:46,283 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 23:15:16] 2025-11-22 22:14:46,451 | INFO     | [payload] validate_post thread has finished
[2025-11-22 23:15:16] 2025-11-22 22:14:46,735 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 23:15:16] 2025-11-22 22:14:47,026 | INFO     | [job] control thread has finished
[2025-11-22 23:15:16] 2025-11-22 22:14:47,151 | INFO     | [data] copytool_in thread has finished
[2025-11-22 23:15:16] 2025-11-22 22:14:47,152 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 23:15:16] 2025-11-22 22:14:47,163 | INFO     | [payload] control thread has finished
[2025-11-22 23:15:16] 2025-11-22 22:14:47,427 | INFO     | [payload] failed_post thread has finished
[2025-11-22 23:15:16] 2025-11-22 22:14:47,489 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 23:15:16] 2025-11-22 22:14:47,749 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:15:16] 2025-11-22 22:14:48,027 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 23:15:16] 2025-11-22 22:14:48,286 | INFO     | [data] copytool_out thread has finished
[2025-11-22 23:15:16] 2025-11-22 22:14:48,755 | INFO     | [job] queue monitor thread has finished
[2025-11-22 23:15:16] 2025-11-22 22:14:52,038 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 23:15:16] 2025-11-22 22:15:05,090 | INFO     | [monitor] cgroup control has ended
[2025-11-22 23:15:16] 2025-11-22 22:15:05,634 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140483243206464)>', '<ExcThread(monitor, started 140482273343232)>']
[2025-11-22 23:15:16] 2025-11-22 22:15:10,660 | INFO     | all workflow threads have been joined
[2025-11-22 23:15:16] 2025-11-22 22:15:10,660 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 23:15:16] 2025-11-22 22:15:10,661 | INFO     | traces error code: 0
[2025-11-22 23:15:16] 2025-11-22 22:15:10,661 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 23:15:16] 2025-11-22 22:15:16,056 | INFO     | PID=7933 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 23:15:16] 2025-11-22 22:15:16,057 | INFO     | .. there are 9 such processes running
[2025-11-22 23:15:16] 2025-11-22 22:15:16,057 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 23:15:16] 2025-11-22 22:15:16,057 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 23:15:16] 2025-11-22 22:15:16,057 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 23:15:16] 2025-11-22 22:15:16,058 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 23:15:16] 2025-11-22 22:15:16,058 | INFO     | [monitor] control thread has ended
[2025-11-22 23:15:16] 2025-11-22 22:15:16,385 [wrapper] ==== pilot stdout END ====
[2025-11-22 23:15:16] 2025-11-22 22:15:16,417 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 23:15:16] 2025-11-22 22:15:16,425 [wrapper] pilotpid: 7933
[2025-11-22 23:15:16] 2025-11-22 22:15:16,428 [wrapper] Pilot exit status: 0
[2025-11-22 23:15:16] 2025-11-22 22:15:16,456 [wrapper] pandaids: 6891596466
[2025-11-22 23:15:16] 2025-11-22 22:15:16,498 [wrapper] cleanup supervisor_pilot 10576 7934
[2025-11-22 23:15:16] 2025-11-22 22:15:16,502 [wrapper] Test setup, not cleaning
[2025-11-22 23:15:16] 2025-11-22 22:15:16,514 [wrapper] apfmon messages muted
[2025-11-22 23:15:16] 2025-11-22 22:15:16,521 [wrapper] ==== wrapper stdout END ====
[2025-11-22 23:15:16] 2025-11-22 22:15:16,535 [wrapper] ==== wrapper stderr END ====
[2025-11-22 23:15:16]  *** Error codes and diagnostics ***
[2025-11-22 23:15:16]     "exeErrorCode": 0,
[2025-11-22 23:15:16]     "exeErrorDiag": "",
[2025-11-22 23:15:16]     "pilotErrorCode": 0,
[2025-11-22 23:15:16]     "pilotErrorDiag": "",
[2025-11-22 23:15:16]  *** Listing of results directory ***
[2025-11-22 23:15:16] total 1338820
[2025-11-22 23:15:16] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:48 queuedata.json
[2025-11-22 23:15:16] -rwx------. 1 boinc boinc     36292 Nov 18 19:50 runpilot2-wrapper.sh
[2025-11-22 23:15:16] -rw-r--r--. 1 boinc boinc    576529 Nov 18 19:50 pilot3.tar.gz
[2025-11-22 23:15:16] -rw-r--r--. 1 boinc boinc       100 Nov 21 21:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 23:15:16] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 21:25 run_atlas
[2025-11-22 23:15:16] -rw-r--r--. 1 boinc boinc       105 Nov 21 21:25 job.xml
[2025-11-22 23:15:16] -rw-r--r--. 2 boinc boinc 411120419 Nov 21 21:25 EVNT.47493065._000787.pool.root.1
[2025-11-22 23:15:16] -rw-r--r--. 1 boinc boinc      6390 Nov 21 21:25 init_data.xml
[2025-11-22 23:15:16] -rw-r--r--. 2 boinc boinc     15120 Nov 21 21:25 start_atlas.sh
[2025-11-22 23:15:16] drwxrwx--x. 2 boinc boinc        68 Nov 21 21:25 shared
[2025-11-22 23:15:16] -rw-r--r--. 2 boinc boinc    590087 Nov 21 21:25 input.tar.gz
[2025-11-22 23:15:16] -rw-r--r--. 1 boinc boinc         0 Nov 21 21:25 boinc_lockfile
[2025-11-22 23:15:16] -rw-r--r--. 1 boinc boinc      2773 Nov 21 21:25 pandaJob.out
[2025-11-22 23:15:16] -rw-------. 1 boinc boinc    989798 Nov 21 21:28 agis_schedconf.cvmfs.json
[2025-11-22 23:15:16] drwx------. 5 boinc boinc      4096 Nov 21 21:28 pilot3
[2025-11-22 23:15:16] -rw-r--r--. 1 boinc boinc       533 Nov 22 22:47 boinc_task_state.xml
[2025-11-22 23:15:16] -rw-------. 1 boinc boinc 926167200 Nov 22 23:13 HITS.47493068._006516.pool.root.1
[2025-11-22 23:15:16] -rw-------. 1 boinc boinc      1030 Nov 22 23:14 memory_monitor_summary.json
[2025-11-22 23:15:16] -rw-------. 1 boinc boinc   1526164 Nov 22 23:14 agis_ddmendpoints.agis.ALL.json
[2025-11-22 23:15:16] -rw-------. 1 boinc boinc   2563802 Nov 22 23:14 log.47493068._006516.job.log.tgz.1
[2025-11-22 23:15:16] -rw-------. 1 boinc boinc        95 Nov 22 23:14 pilot_heartbeat.json
[2025-11-22 23:15:16] -rw-------. 1 boinc boinc      8626 Nov 22 23:14 heartbeat.json
[2025-11-22 23:15:16] -rw-r--r--. 1 boinc boinc      8192 Nov 22 23:14 boinc_mmap_file
[2025-11-22 23:15:16] -rw-r--r--. 1 boinc boinc        29 Nov 22 23:14 wrapper_checkpoint.txt
[2025-11-22 23:15:16] -rw-------. 1 boinc boinc       819 Nov 22 23:15 pilotlog.txt
[2025-11-22 23:15:16] -rw-------. 1 boinc boinc  12322067 Nov 22 23:15 log.47493068._006516.job.log.1
[2025-11-22 23:15:16] -rw-------. 1 boinc boinc       353 Nov 22 23:15 output.list
[2025-11-22 23:15:16] -rw-r--r--. 1 boinc boinc       620 Nov 22 23:15 runtime_log
[2025-11-22 23:15:16] -rw-------. 1 boinc boinc  14909440 Nov 22 23:15 result.tar.gz
[2025-11-22 23:15:16] -rw-------. 1 boinc boinc       662 Nov 22 23:15 VsGMDm7xff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQLGKDmjE0F3n.diag
[2025-11-22 23:15:16] -rw-r--r--. 1 boinc boinc      8703 Nov 22 23:15 runtime_log.err
[2025-11-22 23:15:16] -rw-r--r--. 1 boinc boinc      1839 Nov 22 23:15 stderr.txt
[2025-11-22 23:15:16] HITS file was successfully produced:
[2025-11-22 23:15:16] -rw-------. 1 boinc boinc 926167200 Nov 22 23:13 shared/HITS.pool.root.1
[2025-11-22 23:15:16]  *** Contents of shared directory: ***
[2025-11-22 23:15:16] total 1321108
[2025-11-22 23:15:16] -rw-r--r--. 2 boinc boinc 411120419 Nov 21 21:25 ATLAS.root_0
[2025-11-22 23:15:16] -rw-r--r--. 2 boinc boinc     15120 Nov 21 21:25 start_atlas.sh
[2025-11-22 23:15:16] -rw-r--r--. 2 boinc boinc    590087 Nov 21 21:25 input.tar.gz
[2025-11-22 23:15:16] -rw-------. 1 boinc boinc 926167200 Nov 22 23:13 HITS.pool.root.1
[2025-11-22 23:15:16] -rw-------. 1 boinc boinc  14909440 Nov 22 23:15 result.tar.gz
23:15:18 (4113): run_atlas exited; CPU time 343515.918571
23:15:18 (4113): called boinc_finish(0)

</stderr_txt>
]]>

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