Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:56:59 (29107): wrapper (7.7.26015): starting
23:56:59 (29107): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 23:56:59] Arguments: --nthreads 8
[2025-11-21 23:56:59] Threads: 8
[2025-11-21 23:56:59] Checking for CVMFS
[2025-11-21 23:57:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 23:57:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 23:57:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 23:57:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 23:57:03] 2.11.2.0 13026 278763 139952 153148 0 75 19930646 25165825 4632 130560 2 136378465 99.884 75743140 3392 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 23:57:03] CVMFS is ok
[2025-11-21 23:57:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 23:57:03] Checking for apptainer binary...
[2025-11-21 23:57:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 23:57:03] Running /usr/bin/apptainer --version
[2025-11-21 23:57:03] apptainer version 1.3.2-1.el7
[2025-11-21 23:57:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 23:57:17] cg-vwn329.simple-grid.lan
[2025-11-21 23:57:17] apptainer works
[2025-11-21 23:57:17] Set ATHENA_PROC_NUMBER=8
[2025-11-21 23:57:17] Set ATHENA_CORE_NUMBER=8
[2025-11-21 23:57:17] Starting ATLAS job with PandaID=6891592978
[2025-11-21 23:57:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 02:00:32]  *** The last 200 lines of the pilot log: ***
[2025-11-23 02:00:32] 2025-11-23 00:59:33,543 | INFO     | sum of deviations: 5627793385380.649
[2025-11-23 02:00:32] 2025-11-23 00:59:33,544 | INFO     | mean x: 1763813041.3525937
[2025-11-23 02:00:32] 2025-11-23 00:59:33,544 | INFO     | mean y: 2856640.7846355876
[2025-11-23 02:00:32] 2025-11-23 00:59:33,544 | INFO     | intersect: -9058891848.682196
[2025-11-23 02:00:32] 2025-11-23 00:59:33,546 | INFO     | chi2: 17.69359966200561
[2025-11-23 02:00:32] 2025-11-23 00:59:33,548 | INFO     | sum of square deviations: 1084662317153.9795
[2025-11-23 02:00:32] 2025-11-23 00:59:33,621 | INFO     | sum of deviations: 6140215417728.786
[2025-11-23 02:00:32] 2025-11-23 00:59:33,621 | INFO     | mean x: 1763812888.8570487
[2025-11-23 02:00:32] 2025-11-23 00:59:33,621 | INFO     | mean y: 2863907.556653491
[2025-11-23 02:00:32] 2025-11-23 00:59:33,621 | INFO     | intersect: -9981986605.703445
[2025-11-23 02:00:32] 2025-11-23 00:59:33,623 | INFO     | chi2: 14.569235800686288
[2025-11-23 02:00:32] 2025-11-23 00:59:33,623 | INFO     | current chi2=14.569235800686288 (change=17.65815843583503 %)
[2025-11-23 02:00:32] 2025-11-23 00:59:33,623 | INFO     | right removable region: 1517
[2025-11-23 02:00:32] 2025-11-23 00:59:33,626 | INFO     | sum of square deviations: 1084661060553.9794
[2025-11-23 02:00:32] 2025-11-23 00:59:33,694 | INFO     | sum of deviations: 4981834307252.973
[2025-11-23 02:00:32] 2025-11-23 00:59:33,695 | INFO     | mean x: 1763813193.8570487
[2025-11-23 02:00:32] 2025-11-23 00:59:33,695 | INFO     | mean y: 2865800.8247694336
[2025-11-23 02:00:32] 2025-11-23 00:59:33,695 | INFO     | intersect: -8098305523.841946
[2025-11-23 02:00:32] 2025-11-23 00:59:33,697 | INFO     | chi2: 12.801944421785565
[2025-11-23 02:00:32] 2025-11-23 00:59:33,698 | INFO     | current chi2=12.801944421785565 (change=27.646467274401783 %)
[2025-11-23 02:00:32] 2025-11-23 00:59:33,700 | INFO     | sum of square deviations: 1073977711017.242
[2025-11-23 02:00:32] 2025-11-23 00:59:33,772 | INFO     | sum of deviations: 4412196063421.46
[2025-11-23 02:00:32] 2025-11-23 00:59:33,772 | INFO     | mean x: 1763813346.3615334
[2025-11-23 02:00:32] 2025-11-23 00:59:33,773 | INFO     | mean y: 2873931.8017184404
[2025-11-23 02:00:32] 2025-11-23 00:59:33,773 | INFO     | intersect: -7243356807.992146
[2025-11-23 02:00:32] 2025-11-23 00:59:33,775 | INFO     | chi2: 9.130611061605709
[2025-11-23 02:00:32] 2025-11-23 00:59:33,775 | INFO     | current chi2=9.130611061605709 (change=28.677935469960374 %)
[2025-11-23 02:00:32] 2025-11-23 00:59:33,777 | INFO     | sum of square deviations: 1063364734892.9421
[2025-11-23 02:00:32] 2025-11-23 00:59:33,867 | INFO     | sum of deviations: 3882826232267.879
[2025-11-23 02:00:32] 2025-11-23 00:59:33,867 | INFO     | mean x: 1763813498.8660479
[2025-11-23 02:00:32] 2025-11-23 00:59:33,867 | INFO     | mean y: 2881539.296419098
[2025-11-23 02:00:32] 2025-11-23 00:59:33,867 | INFO     | intersect: -6437600355.107184
[2025-11-23 02:00:32] 2025-11-23 00:59:33,869 | INFO     | chi2: 6.011970870715885
[2025-11-23 02:00:32] 2025-11-23 00:59:33,869 | INFO     | current chi2=6.011970870715885 (change=34.155875985165224 %)
[2025-11-23 02:00:32] 2025-11-23 00:59:33,872 | INFO     | sum of square deviations: 1052821991364.3204
[2025-11-23 02:00:32] 2025-11-23 00:59:33,935 | INFO     | sum of deviations: 3555865849094.922
[2025-11-23 02:00:32] 2025-11-23 00:59:33,936 | INFO     | mean x: 1763813651.369927
[2025-11-23 02:00:32] 2025-11-23 00:59:33,936 | INFO     | mean y: 2886265.710578842
[2025-11-23 02:00:32] 2025-11-23 00:59:33,936 | INFO     | intersect: -5954326614.071874
[2025-11-23 02:00:32] 2025-11-23 00:59:33,938 | INFO     | chi2: 4.773392100145995
[2025-11-23 02:00:32] 2025-11-23 00:59:33,938 | INFO     | current chi2=4.773392100145995 (change=20.60187577759179 %)
[2025-11-23 02:00:32] 2025-11-23 00:59:33,938 | INFO     | left removable region: 40
[2025-11-23 02:00:32] 2025-11-23 00:59:33,940 | INFO     | sum of square deviations: 999125076047.9519
[2025-11-23 02:00:32] 2025-11-23 00:59:33,987 | INFO     | time since job start (93474s) is within the limit (172800.0s)
[2025-11-23 02:00:32] 2025-11-23 00:59:34,008 | INFO     | sum of deviations: 3736072659354.528
[2025-11-23 02:00:32] 2025-11-23 00:59:34,008 | INFO     | mean x: 1763814078.3744075
[2025-11-23 02:00:32] 2025-11-23 00:59:34,008 | INFO     | mean y: 2901622.0243737306
[2025-11-23 02:00:32] 2025-11-23 00:59:34,009 | INFO     | intersect: -6592606500.407097
[2025-11-23 02:00:32] 2025-11-23 00:59:34,011 | INFO     | chi2: 0.6933668668398905
[2025-11-23 02:00:32] 2025-11-23 00:59:34,011 | INFO     | current memory leak: 3.74 B/s (using 1477 data points, chi2=0.69)
[2025-11-23 02:00:32] 2025-11-23 00:59:34,013 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-23 02:00:32] 2025-11-23 00:59:34,014 | INFO     | ..............................
[2025-11-23 02:00:32] 2025-11-23 00:59:34,014 | INFO     | . Timing measurements:
[2025-11-23 02:00:32] 2025-11-23 00:59:34,014 | INFO     | . get job = 0 s
[2025-11-23 02:00:32] 2025-11-23 00:59:34,014 | INFO     | . initial setup = 10 s
[2025-11-23 02:00:32] 2025-11-23 00:59:34,014 | INFO     | . payload setup = 176 s
[2025-11-23 02:00:32] 2025-11-23 00:59:34,014 | INFO     | . stage-in = 0 s
[2025-11-23 02:00:32] 2025-11-23 00:59:34,014 | INFO     | . payload execution = 93012 s
[2025-11-23 02:00:32] 2025-11-23 00:59:34,014 | INFO     | . stage-out = 4 s
[2025-11-23 02:00:32] 2025-11-23 00:59:34,015 | INFO     | . log creation = 1 s
[2025-11-23 02:00:32] 2025-11-23 00:59:34,015 | INFO     | ..............................
[2025-11-23 02:00:32] 2025-11-23 00:59:34,295 | INFO     | 
[2025-11-23 02:00:32] 2025-11-23 00:59:34,295 | INFO     | job summary report
[2025-11-23 02:00:32] 2025-11-23 00:59:34,295 | INFO     | --------------------------------------------------
[2025-11-23 02:00:32] 2025-11-23 00:59:34,295 | INFO     | PanDA job id: 6891592978
[2025-11-23 02:00:32] 2025-11-23 00:59:34,295 | INFO     | task id: 47493068
[2025-11-23 02:00:32] 2025-11-23 00:59:34,295 | INFO     | errors: (none)
[2025-11-23 02:00:32] 2025-11-23 00:59:34,295 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 02:00:32] 2025-11-23 00:59:34,295 | INFO     | pilot state: finished 
[2025-11-23 02:00:32] 2025-11-23 00:59:34,296 | INFO     | transexitcode: 0
[2025-11-23 02:00:32] 2025-11-23 00:59:34,296 | INFO     | exeerrorcode: 0
[2025-11-23 02:00:32] 2025-11-23 00:59:34,296 | INFO     | exeerrordiag: 
[2025-11-23 02:00:32] 2025-11-23 00:59:34,296 | INFO     | exitcode: 0
[2025-11-23 02:00:32] 2025-11-23 00:59:34,296 | INFO     | exitmsg: OK
[2025-11-23 02:00:32] 2025-11-23 00:59:34,296 | INFO     | cpuconsumptiontime: 345151 s
[2025-11-23 02:00:32] 2025-11-23 00:59:34,296 | INFO     | nevents: 1000
[2025-11-23 02:00:32] 2025-11-23 00:59:34,296 | INFO     | neventsw: 0
[2025-11-23 02:00:32] 2025-11-23 00:59:34,296 | INFO     | pid: 7091
[2025-11-23 02:00:32] 2025-11-23 00:59:34,296 | INFO     | pgrp: 7091
[2025-11-23 02:00:32] 2025-11-23 00:59:34,296 | INFO     | corecount: 8
[2025-11-23 02:00:32] 2025-11-23 00:59:34,296 | INFO     | event service: False
[2025-11-23 02:00:32] 2025-11-23 00:59:34,297 | INFO     | sizes: {0: 2297968, 1: 2298653, 2: 2298738, 3: 2298880, 13: 2298880, 24: 2298936, 35: 2299092, 46: 2299120, 56: 2299148, 67: 2299176, 78: 2299204, 89: 2299540, 97:
[2025-11-23 02:00:32] 2025-11-23 00:59:34,297 | INFO     | --------------------------------------------------
[2025-11-23 02:00:32] 2025-11-23 00:59:34,297 | INFO     | 
[2025-11-23 02:00:32] 2025-11-23 00:59:34,297 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-23 02:00:32] 2025-11-23 00:59:34,626 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,627 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,627 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,627 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,627 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,627 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,627 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,627 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,627 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,627 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,628 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,628 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,628 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,628 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,628 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,628 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,628 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,628 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 02:00:32] 2025-11-23 00:59:34,628 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,628 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 02:00:32] 2025-11-23 00:59:34,629 | INFO     | job 6891592978 has completed (purged errors)
[2025-11-23 02:00:32] 2025-11-23 00:59:34,629 | INFO     | overall cleanup function is called
[2025-11-23 02:00:32] 2025-11-23 00:59:35,662 | INFO     | --- collectZombieJob: --- 10, [7091]
[2025-11-23 02:00:32] 2025-11-23 00:59:35,662 | INFO     | zombie collector waiting for pid 7091
[2025-11-23 02:00:32] 2025-11-23 00:59:35,662 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 02:00:32] 2025-11-23 00:59:35,662 | INFO     | collected zombie processes
[2025-11-23 02:00:32] 2025-11-23 00:59:35,662 | INFO     | will attempt to kill all subprocesses of pid=7091
[2025-11-23 02:00:32] 2025-11-23 00:59:35,788 | INFO     | process IDs to be killed: [7091] (in reverse order)
[2025-11-23 02:00:32] 2025-11-23 00:59:36,606 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 02:00:32] 2025-11-23 00:59:36,607 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 02:00:32] 2025-11-23 00:59:36,623 | INFO     | did not find any defunct processes belonging to 7091
[2025-11-23 02:00:32] 2025-11-23 00:59:36,627 | INFO     | did not find any defunct processes belonging to 7091
[2025-11-23 02:00:32] 2025-11-23 00:59:36,693 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 02:00:32] 2025-11-23 00:59:36,693 | INFO     | ready for new job
[2025-11-23 02:00:32] 2025-11-23 00:59:36,693 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 02:00:32] 2025-11-23 00:59:36,700 | INFO     | ***************************************
[2025-11-23 02:00:32] 2025-11-23 00:59:36,700 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 02:00:32] 2025-11-23 00:59:36,700 | INFO     | ***************************************
[2025-11-23 02:00:32] 2025-11-23 00:59:36,700 | INFO     | 
[2025-11-23 02:00:32] 2025-11-23 00:59:36,701 | INFO     | pilot is running in a VM
[2025-11-23 02:00:32] 2025-11-23 00:59:36,701 | INFO     | architecture information:
[2025-11-23 02:00:32] 2025-11-23 00:59:36,707 | INFO     | executing command: cat /etc/os-release
[2025-11-23 02:00:32] 2025-11-23 00:59:36,968 | INFO     | cat /etc/os-release:
[2025-11-23 02:00:32] NAME="CentOS Linux"
[2025-11-23 02:00:32] VERSION="7 (Core)"
[2025-11-23 02:00:32] ID="centos"
[2025-11-23 02:00:32] ID_LIKE="rhel fedora"
[2025-11-23 02:00:32] VERSION_ID="7"
[2025-11-23 02:00:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 02:00:32] ANSI_COLOR="0;31"
[2025-11-23 02:00:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 02:00:32] HOME_URL="https://www.centos.org/"
[2025-11-23 02:00:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 02:00:32] 
[2025-11-23 02:00:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 02:00:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 02:00:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 02:00:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 02:00:32] 
[2025-11-23 02:00:32] 2025-11-23 00:59:36,969 | INFO     | ***************************************
[2025-11-23 02:00:32] 2025-11-23 00:59:37,472 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-23 02:00:32] 2025-11-23 00:59:37,758 | INFO     | sufficient remaining disk space (495195258880 B)
[2025-11-23 02:00:32] 2025-11-23 00:59:37,758 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 02:00:32] 2025-11-23 00:59:37,758 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 02:00:32] 2025-11-23 00:59:37,759 | INFO     | update_server=False
[2025-11-23 02:00:32] 2025-11-23 00:59:37,759 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 02:00:32] 2025-11-23 00:59:37,759 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 02:00:32] 2025-11-23 00:59:37,945 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 02:00:32] 2025-11-23 00:59:37,945 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 02:00:32] 2025-11-23 00:59:37,945 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 02:00:32] 2025-11-23 00:59:37,945 | INFO     | will abort loop
[2025-11-23 02:00:32] 2025-11-23 00:59:38,132 | INFO     | all payload control threads have been joined
[2025-11-23 02:00:32] 2025-11-23 00:59:38,591 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 02:00:32] 2025-11-23 00:59:38,764 | INFO     | [job] retrieve thread has finished
[2025-11-23 02:00:32] 2025-11-23 00:59:38,781 | INFO     | [job] validate thread has finished
[2025-11-23 02:00:32] 2025-11-23 00:59:38,815 | INFO     | all data control threads have been joined
[2025-11-23 02:00:32] 2025-11-23 00:59:38,840 | INFO     | all job control threads have been joined
[2025-11-23 02:00:32] 2025-11-23 00:59:38,951 | INFO     | [job] job monitor thread has finished
[2025-11-23 02:00:32] 2025-11-23 00:59:39,138 | INFO     | [payload] control thread has finished
[2025-11-23 02:00:32] 2025-11-23 00:59:39,155 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 02:00:32] 2025-11-23 00:59:39,272 | INFO     | [payload] failed_post thread has finished
[2025-11-23 02:00:32] 2025-11-23 00:59:39,289 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 02:00:32] 2025-11-23 00:59:39,329 | INFO     | [data] copytool_in thread has finished
[2025-11-23 02:00:32] 2025-11-23 00:59:39,665 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 02:00:32] 2025-11-23 00:59:39,766 | INFO     | [data] copytool_out thread has finished
[2025-11-23 02:00:32] 2025-11-23 00:59:39,772 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 02:00:32] 2025-11-23 00:59:39,782 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 02:00:32] 2025-11-23 00:59:39,806 | INFO     | [payload] validate_post thread has finished
[2025-11-23 02:00:32] 2025-11-23 00:59:39,820 | INFO     | [data] control thread has finished
[2025-11-23 02:00:32] 2025-11-23 00:59:39,846 | INFO     | [job] control thread has finished
[2025-11-23 02:00:32] 2025-11-23 00:59:40,161 | INFO     | [job] queue monitor thread has finished
[2025-11-23 02:00:32] 2025-11-23 00:59:42,600 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 02:00:32] 2025-11-23 01:00:07,209 | INFO     | PID=448 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-11-23 02:00:32] 2025-11-23 01:00:07,210 | INFO     | .. there are 9 such processes running
[2025-11-23 02:00:32] 2025-11-23 01:00:07,210 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 02:00:32] 2025-11-23 01:00:07,210 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 02:00:32] 2025-11-23 01:00:07,210 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 02:00:32] 2025-11-23 01:00:22,441 | INFO     | [monitor] cgroup control has ended
[2025-11-23 02:00:32] 2025-11-23 01:00:22,767 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139824749459264)>', '<ExcThread(monitor, started 139823775991552)>']
[2025-11-23 02:00:32] 2025-11-23 01:00:23,306 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 02:00:32] 2025-11-23 01:00:23,306 | INFO     | [monitor] control thread has ended
[2025-11-23 02:00:32] 2025-11-23 01:00:27,793 | INFO     | all workflow threads have been joined
[2025-11-23 02:00:32] 2025-11-23 01:00:27,793 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 02:00:32] 2025-11-23 01:00:27,793 | INFO     | traces error code: 0
[2025-11-23 02:00:32] 2025-11-23 01:00:27,793 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 02:00:32] 2025-11-23 01:00:28,130 [wrapper] ==== pilot stdout END ====
[2025-11-23 02:00:32] 2025-11-23 01:00:28,161 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 02:00:32] 2025-11-23 01:00:28,197 [wrapper] pilotpid: 448
[2025-11-23 02:00:32] 2025-11-23 01:00:28,285 [wrapper] Pilot exit status: 0
[2025-11-23 02:00:32] 2025-11-23 01:00:28,805 [wrapper] pandaids: 6891592978
[2025-11-23 02:00:32] 2025-11-23 01:00:29,796 [wrapper] cleanup supervisor_pilot 19290 449
[2025-11-23 02:00:32] 2025-11-23 01:00:29,864 [wrapper] Test setup, not cleaning
[2025-11-23 02:00:32] 2025-11-23 01:00:29,976 [wrapper] apfmon messages muted
[2025-11-23 02:00:32] 2025-11-23 01:00:30,086 [wrapper] ==== wrapper stdout END ====
[2025-11-23 02:00:32] 2025-11-23 01:00:30,150 [wrapper] ==== wrapper stderr END ====
[2025-11-23 02:00:32]  *** Error codes and diagnostics ***
[2025-11-23 02:00:32]     "exeErrorCode": 0,
[2025-11-23 02:00:32]     "exeErrorDiag": "",
[2025-11-23 02:00:32]     "pilotErrorCode": 0,
[2025-11-23 02:00:32]     "pilotErrorDiag": "",
[2025-11-23 02:00:32]  *** Listing of results directory ***
[2025-11-23 02:00:32] total 1339820
[2025-11-23 02:00:32] -rwx------. 1 boinc boinc     36292 Nov 18 19:34 runpilot2-wrapper.sh
[2025-11-23 02:00:32] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:34 queuedata.json
[2025-11-23 02:00:32] -rw-r--r--. 1 boinc boinc    576529 Nov 18 19:34 pilot3.tar.gz
[2025-11-23 02:00:32] -rw-r--r--. 1 boinc boinc       100 Nov 21 23:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 02:00:32] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 23:56 run_atlas
[2025-11-23 02:00:32] -rw-r--r--. 1 boinc boinc       105 Nov 21 23:56 job.xml
[2025-11-23 02:00:32] -rw-r--r--. 2 boinc boinc 410216518 Nov 21 23:56 EVNT.47493065._000659.pool.root.1
[2025-11-23 02:00:32] -rw-r--r--. 1 boinc boinc      6390 Nov 21 23:56 init_data.xml
[2025-11-23 02:00:32] -rw-r--r--. 2 boinc boinc     15120 Nov 21 23:56 start_atlas.sh
[2025-11-23 02:00:32] drwxrwx--x. 2 boinc boinc        68 Nov 21 23:56 shared
[2025-11-23 02:00:32] -rw-r--r--. 2 boinc boinc    590078 Nov 21 23:56 input.tar.gz
[2025-11-23 02:00:32] -rw-r--r--. 1 boinc boinc         0 Nov 21 23:56 boinc_lockfile
[2025-11-23 02:00:32] -rw-r--r--. 1 boinc boinc      2773 Nov 21 23:57 pandaJob.out
[2025-11-23 02:00:32] -rw-------. 1 boinc boinc    989798 Nov 22 00:01 agis_schedconf.cvmfs.json
[2025-11-23 02:00:32] drwx------. 5 boinc boinc      4096 Nov 22 00:01 pilot3
[2025-11-23 02:00:32] -rw-r--r--. 1 boinc boinc       533 Nov 23 01:46 boinc_task_state.xml
[2025-11-23 02:00:32] -rw-------. 1 boinc boinc 927675187 Nov 23 01:57 HITS.47493068._006085.pool.root.1
[2025-11-23 02:00:32] -rw-------. 1 boinc boinc      1031 Nov 23 01:58 memory_monitor_summary.json
[2025-11-23 02:00:32] -rw-------. 1 boinc boinc   1526164 Nov 23 01:58 agis_ddmendpoints.agis.ALL.json
[2025-11-23 02:00:32] -rw-------. 1 boinc boinc   2598225 Nov 23 01:58 log.47493068._006085.job.log.tgz.1
[2025-11-23 02:00:32] -rw-------. 1 boinc boinc        95 Nov 23 01:59 pilot_heartbeat.json
[2025-11-23 02:00:32] -rw-------. 1 boinc boinc      8631 Nov 23 01:59 heartbeat.json
[2025-11-23 02:00:32] -rw-r--r--. 1 boinc boinc        29 Nov 23 02:00 wrapper_checkpoint.txt
[2025-11-23 02:00:32] -rw-r--r--. 1 boinc boinc      8192 Nov 23 02:00 boinc_mmap_file
[2025-11-23 02:00:32] -rw-------. 1 boinc boinc      5068 Nov 23 02:00 pilotlog.txt
[2025-11-23 02:00:32] -rw-------. 1 boinc boinc  12487353 Nov 23 02:00 log.47493068._006085.job.log.1
[2025-11-23 02:00:32] -rw-------. 1 boinc boinc       353 Nov 23 02:00 output.list
[2025-11-23 02:00:32] -rw-r--r--. 1 boinc boinc       620 Nov 23 02:00 runtime_log
[2025-11-23 02:00:32] -rw-------. 1 boinc boinc  15104000 Nov 23 02:00 result.tar.gz
[2025-11-23 02:00:32] -rw-r--r--. 1 boinc boinc      8703 Nov 23 02:00 runtime_log.err
[2025-11-23 02:00:32] -rw-------. 1 boinc boinc       662 Nov 23 02:00 f7bKDmJiff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJGGKDmj8cnwn.diag
[2025-11-23 02:00:32] -rw-r--r--. 1 boinc boinc     20879 Nov 23 02:00 stderr.txt
[2025-11-23 02:00:32] HITS file was successfully produced:
[2025-11-23 02:00:32] -rw-------. 1 boinc boinc 927675187 Nov 23 01:57 shared/HITS.pool.root.1
[2025-11-23 02:00:32]  *** Contents of shared directory: ***
[2025-11-23 02:00:32] total 1321888
[2025-11-23 02:00:32] -rw-r--r--. 2 boinc boinc 410216518 Nov 21 23:56 ATLAS.root_0
[2025-11-23 02:00:32] -rw-r--r--. 2 boinc boinc     15120 Nov 21 23:56 start_atlas.sh
[2025-11-23 02:00:32] -rw-r--r--. 2 boinc boinc    590078 Nov 21 23:56 input.tar.gz
[2025-11-23 02:00:32] -rw-------. 1 boinc boinc 927675187 Nov 23 01:57 HITS.pool.root.1
[2025-11-23 02:00:32] -rw-------. 1 boinc boinc  15104000 Nov 23 02:00 result.tar.gz
02:00:34 (29107): run_atlas exited; CPU time 345639.125312
02:00:34 (29107): called boinc_finish(0)

</stderr_txt>
]]>

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