Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:01:03 (676870): wrapper (7.7.26015): starting
22:01:03 (676870): wrapper: running run_atlas (--nthreads 3)
[2025-11-18 22:01:03] Arguments: --nthreads 3
[2025-11-18 22:01:03] Threads: 3
[2025-11-18 22:01:03] Checking for CVMFS
[2025-11-18 22:01:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 22:01:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 22:01:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 22:01:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 22:01:03] 2.9.2.0 4099368 162 62156 153013 2 88 34152383 36864000 0 130560 0 2317537 99.941 136127 7519 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-18 22:01:03] CVMFS is ok
[2025-11-18 22:01:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 22:01:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 22:01:03] Further information can be found at the LHC@home message board.
[2025-11-18 22:01:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 22:01:03] Checking for apptainer binary...
[2025-11-18 22:01:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 22:01:03] Running /usr/bin/apptainer --version
[2025-11-18 22:01:03] apptainer version 1.4.1-1.1
[2025-11-18 22:01:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 22:01:03] thA335
[2025-11-18 22:01:03] apptainer works
[2025-11-18 22:01:03] Set ATHENA_PROC_NUMBER=3
[2025-11-18 22:01:03] Set ATHENA_CORE_NUMBER=3
[2025-11-18 22:01:03] Starting ATLAS job with PandaID=6891565332
[2025-11-18 22:01:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 22:05:22]  *** The last 200 lines of the pilot log: ***
[2025-11-18 22:05:22] ID_LIKE="rhel fedora"
[2025-11-18 22:05:22] VERSION_ID="7"
[2025-11-18 22:05:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 22:05:22] ANSI_COLOR="0;31"
[2025-11-18 22:05:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 22:05:22] HOME_URL="https://www.centos.org/"
[2025-11-18 22:05:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 22:05:22] 
[2025-11-18 22:05:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 22:05:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 22:05:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 22:05:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 22:05:22] 
[2025-11-18 22:05:22] 2025-11-18 21:04:30,159 | INFO     | ***************************************
[2025-11-18 22:05:22] 2025-11-18 21:04:30,662 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-18 22:05:22] 2025-11-18 21:04:30,675 | INFO     | sufficient remaining disk space (827903180800 B)
[2025-11-18 22:05:22] 2025-11-18 21:04:30,675 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 22:05:22] 2025-11-18 21:04:30,676 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 22:05:22] 2025-11-18 21:04:30,676 | INFO     | update_server=False
[2025-11-18 22:05:22] 2025-11-18 21:04:30,676 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 22:05:22] 2025-11-18 21:04:30,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 22:05:22] 2025-11-18 21:04:30,676 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 22:05:22] 2025-11-18 21:04:31,103 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-18 22:05:22] 2025-11-18 21:04:31,103 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-18 22:05:22] 2025-11-18 21:04:31,103 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 22:05:22] 2025-11-18 21:04:31,104 | INFO     | will abort loop
[2025-11-18 22:05:22] 2025-11-18 21:04:31,195 | INFO     | all data control threads have been joined
[2025-11-18 22:05:22] 2025-11-18 21:04:31,496 | INFO     | all payload control threads have been joined
[2025-11-18 22:05:22] 2025-11-18 21:04:31,681 | INFO     | [job] queue monitor thread has finished
[2025-11-18 22:05:22] 2025-11-18 21:04:31,682 | INFO     | [job] retrieve thread has finished
[2025-11-18 22:05:22] 2025-11-18 21:04:31,874 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 22:05:22] 2025-11-18 21:04:32,012 | INFO     | [data] copytool_in thread has finished
[2025-11-18 22:05:22] 2025-11-18 21:04:32,075 | INFO     | all job control threads have been joined
[2025-11-18 22:05:22] 2025-11-18 21:04:32,110 | INFO     | [job] job monitor thread has finished
[2025-11-18 22:05:22] 2025-11-18 21:04:32,132 | INFO     | [payload] validate_post thread has finished
[2025-11-18 22:05:22] 2025-11-18 21:04:32,200 | INFO     | [data] control thread has finished
[2025-11-18 22:05:22] 2025-11-18 21:04:32,352 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 22:05:22] 2025-11-18 21:04:32,498 | INFO     | [job] validate thread has finished
[2025-11-18 22:05:22] 2025-11-18 21:04:32,499 | INFO     | [payload] control thread has finished
[2025-11-18 22:05:22] 2025-11-18 21:04:32,570 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 22:05:22] 2025-11-18 21:04:32,628 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 22:05:22] 2025-11-18 21:04:32,682 | INFO     | [data] copytool_out thread has finished
[2025-11-18 22:05:22] 2025-11-18 21:04:33,081 | INFO     | [job] control thread has finished
[2025-11-18 22:05:22] 2025-11-18 21:04:33,131 | INFO     | [payload] failed_post thread has finished
[2025-11-18 22:05:22] 2025-11-18 21:04:33,197 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 22:05:22] 2025-11-18 21:04:37,205 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 22:05:22] 2025-11-18 21:05:00,617 | INFO     | PID=680604 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-18 22:05:22] 2025-11-18 21:05:00,617 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 22:05:22] 2025-11-18 21:05:00,617 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 22:05:22] 2025-11-18 21:05:00,617 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 22:05:22] 2025-11-18 21:05:15,807 | INFO     | [monitor] cgroup control has ended
[2025-11-18 22:05:22] 2025-11-18 21:05:17,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140370805299008)>', '<ExcThread(monitor, started 140370176362240)>']
[2025-11-18 22:05:22] 2025-11-18 21:05:17,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 22:05:22] 2025-11-18 21:05:17,707 | INFO     | [monitor] control thread has ended
[2025-11-18 22:05:22] 2025-11-18 21:05:22,074 | INFO     | all workflow threads have been joined
[2025-11-18 22:05:22] 2025-11-18 21:05:22,075 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 22:05:22] 2025-11-18 21:05:22,075 | INFO     | traces error code: 0
[2025-11-18 22:05:22] 2025-11-18 21:05:22,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 22:05:22] 2025-11-18 21:05:22,121 [wrapper] ==== pilot stdout END ====
[2025-11-18 22:05:22] 2025-11-18 21:05:22,124 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 22:05:22] 2025-11-18 21:05:22,127 [wrapper] pilotpid: 680604
[2025-11-18 22:05:22] 2025-11-18 21:05:22,130 [wrapper] Pilot exit status: 0
[2025-11-18 22:05:22] 2025-11-18 21:05:22,138 [wrapper] pandaids: 6891565332
[2025-11-18 22:05:22] 2025-11-18 21:05:22,156 [wrapper] cleanup supervisor_pilot  680610 680605
[2025-11-18 22:05:22] 2025-11-18 21:05:22,159 [wrapper] Test setup, not cleaning
[2025-11-18 22:05:22] 2025-11-18 21:05:22,162 [wrapper] apfmon messages muted
[2025-11-18 22:05:22] 2025-11-18 21:05:22,165 [wrapper] ==== wrapper stdout END ====
[2025-11-18 22:05:22] 2025-11-18 21:05:22,167 [wrapper] ==== wrapper stderr END ====
[2025-11-18 22:05:22]  *** Error codes and diagnostics ***
[2025-11-18 22:05:22]     "exeErrorCode": 65,
[2025-11-18 22:05:22]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-18 22:05:22]     "pilotErrorCode": 1305,
[2025-11-18 22:05:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-18 22:05:22]  *** Listing of results directory ***
[2025-11-18 22:05:22] total 404076
[2025-11-18 22:05:22] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-18 22:05:22] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:29 queuedata.json
[2025-11-18 22:05:22] -rwx------ 1 boinc boinc     36292 Nov 18 16:30 runpilot2-wrapper.sh
[2025-11-18 22:05:22] -rw-r--r-- 1 boinc boinc       100 Nov 18 22:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 22:05:22] -rwxr-xr-x 1 boinc boinc      7986 Nov 18 22:01 run_atlas
[2025-11-18 22:05:22] -rw-r--r-- 1 boinc boinc       105 Nov 18 22:01 job.xml
[2025-11-18 22:05:22] -rw-r--r-- 2 boinc boinc 409573603 Nov 18 22:01 EVNT.47493065._000144.pool.root.1
[2025-11-18 22:05:22] drwxrwx--x 2 boinc boinc      4096 Nov 18 22:01 shared
[2025-11-18 22:05:22] -rw-r--r-- 2 boinc boinc    590099 Nov 18 22:01 input.tar.gz
[2025-11-18 22:05:22] -rw-r--r-- 2 boinc boinc     15120 Nov 18 22:01 start_atlas.sh
[2025-11-18 22:05:22] -rw-r--r-- 1 boinc boinc         0 Nov 18 22:01 boinc_setup_complete
[2025-11-18 22:05:22] -rw-r--r-- 1 boinc boinc      6193 Nov 18 22:01 init_data.xml
[2025-11-18 22:05:22] -rw-r--r-- 1 boinc boinc         0 Nov 18 22:01 boinc_lockfile
[2025-11-18 22:05:22] -rw-r--r-- 1 boinc boinc      2773 Nov 18 22:01 pandaJob.out
[2025-11-18 22:05:22] -rw------- 1 boinc boinc    992790 Nov 18 22:01 agis_schedconf.cvmfs.json
[2025-11-18 22:05:22] -rw------- 1 boinc boinc   1525063 Nov 18 22:01 agis_ddmendpoints.agis.ALL.json
[2025-11-18 22:05:22] drwx------ 5 boinc boinc      4096 Nov 18 22:01 pilot3
[2025-11-18 22:05:22] -rw-r--r-- 1 boinc boinc       522 Nov 18 22:01 boinc_task_state.xml
[2025-11-18 22:05:22] -rw------- 1 boinc boinc       981 Nov 18 22:02 memory_monitor_summary.json
[2025-11-18 22:05:22] -rw------- 1 boinc boinc     55710 Nov 18 22:02 log.47493068._001436.job.log.tgz.1
[2025-11-18 22:05:22] -rw------- 1 boinc boinc        95 Nov 18 22:04 pilot_heartbeat.json
[2025-11-18 22:05:22] -rw------- 1 boinc boinc      8384 Nov 18 22:04 heartbeat.json
[2025-11-18 22:05:22] -rw-r--r-- 1 boinc boinc        22 Nov 18 22:05 wrapper_checkpoint.txt
[2025-11-18 22:05:22] -rw-r--r-- 1 boinc boinc      8192 Nov 18 22:05 boinc_mmap_file
[2025-11-18 22:05:22] -rw------- 1 boinc boinc      4937 Nov 18 22:05 pilotlog.txt
[2025-11-18 22:05:22] -rw------- 1 boinc boinc     92264 Nov 18 22:05 log.47493068._001436.job.log.1
[2025-11-18 22:05:22] -rw------- 1 boinc boinc       186 Nov 18 22:05 output.list
[2025-11-18 22:05:22] -rw-r--r-- 1 boinc boinc       620 Nov 18 22:05 runtime_log
[2025-11-18 22:05:22] -rw------- 1 boinc boinc    163840 Nov 18 22:05 result.tar.gz
[2025-11-18 22:05:22] -rw-r--r-- 1 boinc boinc      8624 Nov 18 22:05 runtime_log.err
[2025-11-18 22:05:22] -rw------- 1 boinc boinc       649 Nov 18 22:05 pX6LDmWqcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtSFKDmQbTCxm.diag
[2025-11-18 22:05:22] -rw-r--r-- 1 boinc boinc      9191 Nov 18 22:05 stderr.txt
[2025-11-18 22:05:22] No HITS result produced
[2025-11-18 22:05:22]  *** Contents of shared directory: ***
[2025-11-18 22:05:22] total 400736
[2025-11-18 22:05:22] -rw-r--r-- 2 boinc boinc 409573603 Nov 18 22:01 ATLAS.root_0
[2025-11-18 22:05:22] -rw-r--r-- 2 boinc boinc    590099 Nov 18 22:01 input.tar.gz
[2025-11-18 22:05:22] -rw-r--r-- 2 boinc boinc     15120 Nov 18 22:01 start_atlas.sh
[2025-11-18 22:05:22] -rw------- 1 boinc boinc    163840 Nov 18 22:05 result.tar.gz
22:05:23 (676870): run_atlas exited; CPU time 30.833919
22:05:23 (676870): called boinc_finish(0)

</stderr_txt>
]]>

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