Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:31:41 (5893): wrapper (7.7.26015): starting
18:31:41 (5893): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 18:31:41] Arguments: --nthreads 8
[2025-11-21 18:31:41] Threads: 8
[2025-11-21 18:31:41] Checking for CVMFS
[2025-11-21 18:31:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 18:31:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 18:31:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 18:31:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 18:31:44] 2.11.2.0 20606 74588 98152 153128 2 85 20961580 25165824 4250 130560 3 23616016 99.906 11056668 1991 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 18:31:44] CVMFS is ok
[2025-11-21 18:31:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 18:31:44] Checking for apptainer binary...
[2025-11-21 18:31:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 18:31:44] Running /usr/bin/apptainer --version
[2025-11-21 18:31:44] apptainer version 1.3.2-1.el7
[2025-11-21 18:31:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 18:31:52] cg-vwn476.simple-grid.lan
[2025-11-21 18:31:52] apptainer works
[2025-11-21 18:31:52] Set ATHENA_PROC_NUMBER=8
[2025-11-21 18:31:52] Set ATHENA_CORE_NUMBER=8
[2025-11-21 18:31:53] Starting ATLAS job with PandaID=6891569402
[2025-11-21 18:31:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 18:23:09]  *** The last 200 lines of the pilot log: ***
[2025-11-22 18:23:09] 2025-11-22 17:22:20,316 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 18:23:09] 2025-11-22 17:22:21,901 | INFO     | time since job start (85612s) is within the limit (172800.0s)
[2025-11-22 18:23:09] 2025-11-22 17:22:22,821 | INFO     | monitor loop #5835: job 0:6891569402 is in state 'finished'
[2025-11-22 18:23:09] 2025-11-22 17:22:22,822 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 18:23:09] 2025-11-22 17:22:23,908 | INFO     | time since job start (85614s) is within the limit (172800.0s)
[2025-11-22 18:23:09] 2025-11-22 17:22:25,333 | INFO     | monitor loop #5836: job 0:6891569402 is in state 'finished'
[2025-11-22 18:23:09] 2025-11-22 17:22:25,334 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 18:23:09] 2025-11-22 17:22:25,916 | INFO     | time since job start (85616s) is within the limit (172800.0s)
[2025-11-22 18:23:09] 2025-11-22 17:22:27,853 | INFO     | monitor loop #5837: job 0:6891569402 is in state 'finished'
[2025-11-22 18:23:09] 2025-11-22 17:22:27,854 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 18:23:09] 2025-11-22 17:22:27,924 | INFO     | time since job start (85618s) is within the limit (172800.0s)
[2025-11-22 18:23:09] 2025-11-22 17:22:29,142 | INFO     | PID=9666 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 18:23:09] 2025-11-22 17:22:29,142 | INFO     | .. there are 9 such processes running
[2025-11-22 18:23:09] 2025-11-22 17:22:30,143 | INFO     | time since job start (85621s) is within the limit (172800.0s)
[2025-11-22 18:23:09] 2025-11-22 17:22:30,359 | INFO     | monitor loop #5838: job 0:6891569402 is in state 'finished'
[2025-11-22 18:23:09] 2025-11-22 17:22:30,360 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 18:23:09] 2025-11-22 17:22:31,085 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 18:23:09] 2025-11-22 17:22:31,088 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-22 18:23:09] 2025-11-22 17:22:31,090 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6891569402/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 18:23:09] 2025-11-22 17:22:31,091 | INFO     | extracted standard info from prmon json
[2025-11-22 18:23:09] 2025-11-22 17:22:31,091 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 18:23:09] 2025-11-22 17:22:31,091 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 18:23:09] 2025-11-22 17:22:31,115 | INFO     | fitting pss+swap vs Time
[2025-11-22 18:23:09] 2025-11-22 17:22:31,118 | INFO     | sum of square deviations: 839973810719.8057
[2025-11-22 18:23:09] 2025-11-22 17:22:31,169 | INFO     | sum of deviations: 4176404893659.1636
[2025-11-22 18:23:09] 2025-11-22 17:22:31,170 | INFO     | mean x: 1763789526.8199427
[2025-11-22 18:23:09] 2025-11-22 17:22:31,170 | INFO     | mean y: 2831002.3034433285
[2025-11-22 18:23:09] 2025-11-22 17:22:31,170 | INFO     | intersect: -8766846239.041885
[2025-11-22 18:23:09] 2025-11-22 17:22:31,171 | INFO     | chi2: 28.591359117006874
[2025-11-22 18:23:09] 2025-11-22 17:22:31,173 | INFO     | sum of square deviations: 830968277468.5621
[2025-11-22 18:23:09] 2025-11-22 17:22:31,229 | INFO     | sum of deviations: 4648254618534.238
[2025-11-22 18:23:09] 2025-11-22 17:22:31,229 | INFO     | mean x: 1763789374.324694
[2025-11-22 18:23:09] 2025-11-22 17:22:31,229 | INFO     | mean y: 2838991.71562275
[2025-11-22 18:23:09] 2025-11-22 17:22:31,229 | INFO     | intersect: -9863412618.155909
[2025-11-22 18:23:09] 2025-11-22 17:22:31,231 | INFO     | chi2: 25.325768319809534
[2025-11-22 18:23:09] 2025-11-22 17:22:31,231 | INFO     | current chi2=25.325768319809534 (change=11.421600434709251 %)
[2025-11-22 18:23:09] 2025-11-22 17:22:31,231 | INFO     | right removable region: 1388
[2025-11-22 18:23:09] 2025-11-22 17:22:31,233 | INFO     | sum of square deviations: 830967155068.5626
[2025-11-22 18:23:09] 2025-11-22 17:22:31,283 | INFO     | sum of deviations: 3576715097480.4067
[2025-11-22 18:23:09] 2025-11-22 17:22:31,283 | INFO     | mean x: 1763789679.324694
[2025-11-22 18:23:09] 2025-11-22 17:22:31,283 | INFO     | mean y: 2841156.506839453
[2025-11-22 18:23:09] 2025-11-22 17:22:31,283 | INFO     | intersect: -7589003041.354677
[2025-11-22 18:23:09] 2025-11-22 17:22:31,285 | INFO     | chi2: 23.389173676675156
[2025-11-22 18:23:09] 2025-11-22 17:22:31,285 | INFO     | current chi2=23.389173676675156 (change=18.194956801606974 %)
[2025-11-22 18:23:09] 2025-11-22 17:22:31,285 | INFO     | left removable region: 10
[2025-11-22 18:23:09] 2025-11-22 17:22:31,287 | INFO     | sum of square deviations: 811380944703.6062
[2025-11-22 18:23:09] 2025-11-22 17:22:31,335 | INFO     | sum of deviations: 3606026838591.2295
[2025-11-22 18:23:09] 2025-11-22 17:22:31,336 | INFO     | mean x: 1763789648.8352685
[2025-11-22 18:23:09] 2025-11-22 17:22:31,336 | INFO     | mean y: 2860278.727866473
[2025-11-22 18:23:09] 2025-11-22 17:22:31,336 | INFO     | intersect: -7835964200.509512
[2025-11-22 18:23:09] 2025-11-22 17:22:31,338 | INFO     | chi2: 15.177644821543007
[2025-11-22 18:23:09] 2025-11-22 17:22:31,338 | INFO     | current memory leak: 4.44 B/s (using 1378 data points, chi2=15.18)
[2025-11-22 18:23:09] 2025-11-22 17:22:31,340 | INFO     | could have reported an average CPU frequency of 2249 MHz (48 samples)
[2025-11-22 18:23:09] 2025-11-22 17:22:31,341 | INFO     | ..............................
[2025-11-22 18:23:09] 2025-11-22 17:22:31,341 | INFO     | . Timing measurements:
[2025-11-22 18:23:09] 2025-11-22 17:22:31,341 | INFO     | . get job = 0 s
[2025-11-22 18:23:09] 2025-11-22 17:22:31,341 | INFO     | . initial setup = 7 s
[2025-11-22 18:23:09] 2025-11-22 17:22:31,341 | INFO     | . payload setup = 178 s
[2025-11-22 18:23:09] 2025-11-22 17:22:31,341 | INFO     | . stage-in = 0 s
[2025-11-22 18:23:09] 2025-11-22 17:22:31,341 | INFO     | . payload execution = 85147 s
[2025-11-22 18:23:09] 2025-11-22 17:22:31,341 | INFO     | . stage-out = 5 s
[2025-11-22 18:23:09] 2025-11-22 17:22:31,342 | INFO     | . log creation = 2 s
[2025-11-22 18:23:09] 2025-11-22 17:22:31,342 | INFO     | ..............................
[2025-11-22 18:23:09] 2025-11-22 17:22:31,462 | INFO     | 
[2025-11-22 18:23:09] 2025-11-22 17:22:31,462 | INFO     | job summary report
[2025-11-22 18:23:09] 2025-11-22 17:22:31,462 | INFO     | --------------------------------------------------
[2025-11-22 18:23:09] 2025-11-22 17:22:31,462 | INFO     | PanDA job id: 6891569402
[2025-11-22 18:23:09] 2025-11-22 17:22:31,462 | INFO     | task id: 47493068
[2025-11-22 18:23:09] 2025-11-22 17:22:31,463 | INFO     | errors: (none)
[2025-11-22 18:23:09] 2025-11-22 17:22:31,463 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 18:23:09] 2025-11-22 17:22:31,463 | INFO     | pilot state: finished 
[2025-11-22 18:23:09] 2025-11-22 17:22:31,463 | INFO     | transexitcode: 0
[2025-11-22 18:23:09] 2025-11-22 17:22:31,463 | INFO     | exeerrorcode: 0
[2025-11-22 18:23:09] 2025-11-22 17:22:31,463 | INFO     | exeerrordiag: 
[2025-11-22 18:23:09] 2025-11-22 17:22:31,463 | INFO     | exitcode: 0
[2025-11-22 18:23:09] 2025-11-22 17:22:31,463 | INFO     | exitmsg: OK
[2025-11-22 18:23:09] 2025-11-22 17:22:31,463 | INFO     | cpuconsumptiontime: 308100 s
[2025-11-22 18:23:09] 2025-11-22 17:22:31,463 | INFO     | nevents: 1000
[2025-11-22 18:23:09] 2025-11-22 17:22:31,463 | INFO     | neventsw: 0
[2025-11-22 18:23:09] 2025-11-22 17:22:31,463 | INFO     | pid: 16246
[2025-11-22 18:23:09] 2025-11-22 17:22:31,463 | INFO     | pgrp: 16246
[2025-11-22 18:23:09] 2025-11-22 17:22:31,463 | INFO     | corecount: 8
[2025-11-22 18:23:09] 2025-11-22 17:22:31,464 | INFO     | event service: False
[2025-11-22 18:23:09] 2025-11-22 17:22:31,464 | INFO     | sizes: {0: 2298564, 1: 2298819, 2: 2298819, 12: 2298847, 23: 2298875, 34: 2298903, 45: 2299059, 55: 2299087, 66: 2299115, 77: 2299143, 88: 2299741, 98: 2299769, 85
[2025-11-22 18:23:09] 2025-11-22 17:22:31,464 | INFO     | --------------------------------------------------
[2025-11-22 18:23:09] 2025-11-22 17:22:31,464 | INFO     | 
[2025-11-22 18:23:09] 2025-11-22 17:22:31,464 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-22 18:23:09] 2025-11-22 17:22:31,523 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,524 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,524 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,524 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,524 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,524 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,524 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,524 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,524 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,524 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,524 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,524 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,524 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,525 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,525 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,525 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,525 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,525 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 18:23:09] 2025-11-22 17:22:31,525 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,529 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 18:23:09] 2025-11-22 17:22:31,529 | INFO     | job 6891569402 has completed (purged errors)
[2025-11-22 18:23:09] 2025-11-22 17:22:31,529 | INFO     | overall cleanup function is called
[2025-11-22 18:23:09] 2025-11-22 17:22:32,548 | INFO     | --- collectZombieJob: --- 10, [16246]
[2025-11-22 18:23:09] 2025-11-22 17:22:32,549 | INFO     | zombie collector waiting for pid 16246
[2025-11-22 18:23:09] 2025-11-22 17:22:32,549 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 18:23:09] 2025-11-22 17:22:32,549 | INFO     | collected zombie processes
[2025-11-22 18:23:09] 2025-11-22 17:22:32,549 | INFO     | will attempt to kill all subprocesses of pid=16246
[2025-11-22 18:23:09] 2025-11-22 17:22:32,663 | INFO     | process IDs to be killed: [16246] (in reverse order)
[2025-11-22 18:23:09] 2025-11-22 17:22:33,245 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 18:23:09] 2025-11-22 17:22:33,245 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 18:23:09] 2025-11-22 17:22:33,249 | INFO     | did not find any defunct processes belonging to 16246
[2025-11-22 18:23:09] 2025-11-22 17:22:33,252 | INFO     | did not find any defunct processes belonging to 16246
[2025-11-22 18:23:09] 2025-11-22 17:22:33,315 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 18:23:09] 2025-11-22 17:22:33,316 | INFO     | ready for new job
[2025-11-22 18:23:09] 2025-11-22 17:22:33,316 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 18:23:09] 2025-11-22 17:22:33,322 | INFO     | ***************************************
[2025-11-22 18:23:09] 2025-11-22 17:22:33,322 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 18:23:09] 2025-11-22 17:22:33,323 | INFO     | ***************************************
[2025-11-22 18:23:09] 2025-11-22 17:22:33,323 | INFO     | 
[2025-11-22 18:23:09] 2025-11-22 17:22:33,323 | INFO     | pilot is running in a VM
[2025-11-22 18:23:09] 2025-11-22 17:22:33,323 | INFO     | architecture information:
[2025-11-22 18:23:09] 2025-11-22 17:22:33,337 | INFO     | executing command: cat /etc/os-release
[2025-11-22 18:23:09] 2025-11-22 17:22:33,524 | INFO     | cat /etc/os-release:
[2025-11-22 18:23:09] NAME="CentOS Linux"
[2025-11-22 18:23:09] VERSION="7 (Core)"
[2025-11-22 18:23:09] ID="centos"
[2025-11-22 18:23:09] ID_LIKE="rhel fedora"
[2025-11-22 18:23:09] VERSION_ID="7"
[2025-11-22 18:23:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 18:23:09] ANSI_COLOR="0;31"
[2025-11-22 18:23:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 18:23:09] HOME_URL="https://www.centos.org/"
[2025-11-22 18:23:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 18:23:09] 
[2025-11-22 18:23:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 18:23:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 18:23:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 18:23:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 18:23:09] 
[2025-11-22 18:23:09] 2025-11-22 17:22:33,524 | INFO     | ***************************************
[2025-11-22 18:23:09] 2025-11-22 17:22:34,027 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-22 18:23:09] 2025-11-22 17:22:34,207 | INFO     | sufficient remaining disk space (493852033024 B)
[2025-11-22 18:23:09] 2025-11-22 17:22:34,207 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 18:23:09] 2025-11-22 17:22:34,208 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 18:23:09] 2025-11-22 17:22:34,208 | INFO     | update_server=False
[2025-11-22 18:23:09] 2025-11-22 17:22:34,208 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 18:23:09] 2025-11-22 17:22:34,208 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 18:23:09] 2025-11-22 17:22:34,209 | INFO     | aborting loop
[2025-11-22 18:23:09] 2025-11-22 17:22:34,618 | INFO     | all payload control threads have been joined
[2025-11-22 18:23:09] 2025-11-22 17:22:34,626 | INFO     | all data control threads have been joined
[2025-11-22 18:23:09] 2025-11-22 17:22:35,173 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 18:23:09] 2025-11-22 17:22:35,193 | INFO     | all job control threads have been joined
[2025-11-22 18:23:09] 2025-11-22 17:22:35,214 | INFO     | [job] retrieve thread has finished
[2025-11-22 18:23:09] 2025-11-22 17:22:35,218 | INFO     | [job] job monitor thread has finished
[2025-11-22 18:23:09] 2025-11-22 17:22:35,219 | INFO     | [data] copytool_in thread has finished
[2025-11-22 18:23:09] 2025-11-22 17:22:35,420 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 18:23:09] 2025-11-22 17:22:35,597 | INFO     | [job] validate thread has finished
[2025-11-22 18:23:09] 2025-11-22 17:22:35,623 | INFO     | [payload] control thread has finished
[2025-11-22 18:23:09] 2025-11-22 17:22:35,632 | INFO     | [data] control thread has finished
[2025-11-22 18:23:09] 2025-11-22 17:22:35,848 | INFO     | [payload] failed_post thread has finished
[2025-11-22 18:23:09] 2025-11-22 17:22:36,060 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 18:23:09] 2025-11-22 17:22:36,199 | INFO     | [job] control thread has finished
[2025-11-22 18:23:09] 2025-11-22 17:22:36,373 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 18:23:09] 2025-11-22 17:22:36,399 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 18:23:09] 2025-11-22 17:22:36,477 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 18:23:09] 2025-11-22 17:22:36,737 | INFO     | [payload] validate_post thread has finished
[2025-11-22 18:23:09] 2025-11-22 17:22:37,180 | INFO     | [data] copytool_out thread has finished
[2025-11-22 18:23:09] 2025-11-22 17:22:37,483 | INFO     | [job] queue monitor thread has finished
[2025-11-22 18:23:09] 2025-11-22 17:22:37,489 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 18:23:09] 2025-11-22 17:22:41,498 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 18:23:09] 2025-11-22 17:22:58,577 | INFO     | [monitor] cgroup control has ended
[2025-11-22 18:23:09] 2025-11-22 17:23:00,145 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139704471123776)>', '<ExcThread(monitor, started 139703810520832)>']
[2025-11-22 18:23:09] 2025-11-22 17:23:03,370 | INFO     | PID=9666 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 18:23:09] 2025-11-22 17:23:03,370 | INFO     | .. there are 9 such processes running
[2025-11-22 18:23:09] 2025-11-22 17:23:03,371 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 18:23:09] 2025-11-22 17:23:03,371 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 18:23:09] 2025-11-22 17:23:03,371 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 18:23:09] 2025-11-22 17:23:03,372 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 18:23:09] 2025-11-22 17:23:03,372 | INFO     | [monitor] control thread has ended
[2025-11-22 18:23:09] 2025-11-22 17:23:05,171 | INFO     | all workflow threads have been joined
[2025-11-22 18:23:09] 2025-11-22 17:23:05,172 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 18:23:09] 2025-11-22 17:23:05,172 | INFO     | traces error code: 0
[2025-11-22 18:23:09] 2025-11-22 17:23:05,172 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 18:23:09] 2025-11-22 17:23:05,560 [wrapper] ==== pilot stdout END ====
[2025-11-22 18:23:09] 2025-11-22 17:23:05,659 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 18:23:09] 2025-11-22 17:23:05,764 [wrapper] pilotpid: 9666
[2025-11-22 18:23:09] 2025-11-22 17:23:05,825 [wrapper] Pilot exit status: 0
[2025-11-22 18:23:09] 2025-11-22 17:23:06,226 [wrapper] pandaids: 6891569402
[2025-11-22 18:23:09] 2025-11-22 17:23:07,050 [wrapper] cleanup supervisor_pilot 28445 9667
[2025-11-22 18:23:09] 2025-11-22 17:23:07,122 [wrapper] Test setup, not cleaning
[2025-11-22 18:23:09] 2025-11-22 17:23:07,230 [wrapper] apfmon messages muted
[2025-11-22 18:23:09] 2025-11-22 17:23:07,350 [wrapper] ==== wrapper stdout END ====
[2025-11-22 18:23:09] 2025-11-22 17:23:07,471 [wrapper] ==== wrapper stderr END ====
[2025-11-22 18:23:09]  *** Error codes and diagnostics ***
[2025-11-22 18:23:09]     "exeErrorCode": 0,
[2025-11-22 18:23:09]     "exeErrorDiag": "",
[2025-11-22 18:23:09]     "pilotErrorCode": 0,
[2025-11-22 18:23:09]     "pilotErrorDiag": "",
[2025-11-22 18:23:09]  *** Listing of results directory ***
[2025-11-22 18:23:09] total 1328960
[2025-11-22 18:23:09] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-22 18:23:09] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:32 queuedata.json
[2025-11-22 18:23:09] -rwx------. 1 boinc boinc     36292 Nov 18 16:34 runpilot2-wrapper.sh
[2025-11-22 18:23:09] -rw-r--r--. 1 boinc boinc       100 Nov 21 18:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 18:23:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 18:31 run_atlas
[2025-11-22 18:23:09] -rw-r--r--. 1 boinc boinc       105 Nov 21 18:31 job.xml
[2025-11-22 18:23:09] -rw-r--r--. 1 boinc boinc      6392 Nov 21 18:31 init_data.xml
[2025-11-22 18:23:09] -rw-r--r--. 2 boinc boinc 407304504 Nov 21 18:31 EVNT.47493065._000200.pool.root.1
[2025-11-22 18:23:09] -rw-r--r--. 2 boinc boinc     15120 Nov 21 18:31 start_atlas.sh
[2025-11-22 18:23:09] drwxrwx--x. 2 boinc boinc        68 Nov 21 18:31 shared
[2025-11-22 18:23:09] -rw-r--r--. 2 boinc boinc    590099 Nov 21 18:31 input.tar.gz
[2025-11-22 18:23:09] -rw-r--r--. 1 boinc boinc         0 Nov 21 18:31 boinc_lockfile
[2025-11-22 18:23:09] -rw-r--r--. 1 boinc boinc      2770 Nov 21 18:31 pandaJob.out
[2025-11-22 18:23:09] -rw-------. 1 boinc boinc    989817 Nov 21 18:35 agis_schedconf.cvmfs.json
[2025-11-22 18:23:09] drwx------. 5 boinc boinc      4096 Nov 21 18:35 pilot3
[2025-11-22 18:23:09] -rw-r--r--. 1 boinc boinc       533 Nov 22 18:01 boinc_task_state.xml
[2025-11-22 18:23:09] -rw-------. 1 boinc boinc 921599528 Nov 22 18:19 HITS.47493068._001991.pool.root.1
[2025-11-22 18:23:09] -rw-------. 1 boinc boinc      1031 Nov 22 18:20 memory_monitor_summary.json
[2025-11-22 18:23:09] -rw-------. 1 boinc boinc   1526164 Nov 22 18:20 agis_ddmendpoints.agis.ALL.json
[2025-11-22 18:23:09] -rw-------. 1 boinc boinc   2491377 Nov 22 18:20 log.47493068._001991.job.log.tgz.1
[2025-11-22 18:23:09] -rw-------. 1 boinc boinc      8620 Nov 22 18:22 heartbeat.json
[2025-11-22 18:23:09] -rw-r--r--. 1 boinc boinc      8192 Nov 22 18:22 boinc_mmap_file
[2025-11-22 18:23:09] -rw-r--r--. 1 boinc boinc        29 Nov 22 18:22 wrapper_checkpoint.txt
[2025-11-22 18:23:09] -rw-------. 1 boinc boinc        95 Nov 22 18:23 pilot_heartbeat.json
[2025-11-22 18:23:09] -rw-------. 1 boinc boinc      4884 Nov 22 18:23 pilotlog.txt
[2025-11-22 18:23:09] -rw-------. 1 boinc boinc  11528814 Nov 22 18:23 log.47493068._001991.job.log.1
[2025-11-22 18:23:09] -rw-------. 1 boinc boinc       353 Nov 22 18:23 output.list
[2025-11-22 18:23:09] -rw-r--r--. 1 boinc boinc       620 Nov 22 18:23 runtime_log
[2025-11-22 18:23:09] -rw-------. 1 boinc boinc  14039040 Nov 22 18:23 result.tar.gz
[2025-11-22 18:23:09] -rw-r--r--. 1 boinc boinc      8717 Nov 22 18:23 runtime_log.err
[2025-11-22 18:23:09] -rw-------. 1 boinc boinc       662 Nov 22 18:23 BFNKDmhtcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLXFKDmfaykmm.diag
[2025-11-22 18:23:09] -rw-r--r--. 1 boinc boinc     21519 Nov 22 18:23 stderr.txt
[2025-11-22 18:23:09] HITS file was successfully produced:
[2025-11-22 18:23:09] -rw-------. 1 boinc boinc 921599528 Nov 22 18:19 shared/HITS.pool.root.1
[2025-11-22 18:23:09]  *** Contents of shared directory: ***
[2025-11-22 18:23:09] total 1312068
[2025-11-22 18:23:09] -rw-r--r--. 2 boinc boinc 407304504 Nov 21 18:31 ATLAS.root_0
[2025-11-22 18:23:09] -rw-r--r--. 2 boinc boinc     15120 Nov 21 18:31 start_atlas.sh
[2025-11-22 18:23:09] -rw-r--r--. 2 boinc boinc    590099 Nov 21 18:31 input.tar.gz
[2025-11-22 18:23:09] -rw-------. 1 boinc boinc 921599528 Nov 22 18:19 HITS.pool.root.1
[2025-11-22 18:23:09] -rw-------. 1 boinc boinc  14039040 Nov 22 18:23 result.tar.gz
18:23:10 (5893): run_atlas exited; CPU time 308542.924955
18:23:10 (5893): called boinc_finish(0)

</stderr_txt>
]]>

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