Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:49:12 (1423): wrapper (7.7.26015): starting
21:49:12 (1423): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 21:49:12] Arguments: --nthreads 8
[2025-11-21 21:49:12] Threads: 8
[2025-11-21 21:49:12] Checking for CVMFS
[2025-11-21 21:49:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:49:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:49:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:49:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:49:14] 2.11.2.0 11156 278524 144392 153142 0 236 19642822 25165825 4021 130560 2 138557361 99.880 73919072 2817 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 21:49:14] CVMFS is ok
[2025-11-21 21:49:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:49:14] Checking for apptainer binary...
[2025-11-21 21:49:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 21:49:14] Running /usr/bin/apptainer --version
[2025-11-21 21:49:14] apptainer version 1.3.2-1.el7
[2025-11-21 21:49:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:49:18] cg-vwn264.simple-grid.lan
[2025-11-21 21:49:18] apptainer works
[2025-11-21 21:49:18] Set ATHENA_PROC_NUMBER=8
[2025-11-21 21:49:18] Set ATHENA_CORE_NUMBER=8
[2025-11-21 21:49:18] Starting ATLAS job with PandaID=6891571551
[2025-11-21 21:49:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/27 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 23:29:40]  *** The last 200 lines of the pilot log: ***
[2025-11-22 23:29:40] 2025-11-22 22:28:40,646 | INFO     | monitor loop #6145: job 0:6891571551 is in state 'finished'
[2025-11-22 23:29:40] 2025-11-22 22:28:40,647 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:29:40] 2025-11-22 22:28:42,644 | INFO     | time since job start (92334s) is within the limit (172800.0s)
[2025-11-22 23:29:40] 2025-11-22 22:28:43,158 | INFO     | monitor loop #6146: job 0:6891571551 is in state 'finished'
[2025-11-22 23:29:40] 2025-11-22 22:28:43,159 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:29:40] 2025-11-22 22:28:44,651 | INFO     | time since job start (92336s) is within the limit (172800.0s)
[2025-11-22 23:29:40] 2025-11-22 22:28:45,665 | INFO     | monitor loop #6147: job 0:6891571551 is in state 'finished'
[2025-11-22 23:29:40] 2025-11-22 22:28:45,666 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:29:40] 2025-11-22 22:28:46,658 | INFO     | time since job start (92338s) is within the limit (172800.0s)
[2025-11-22 23:29:40] 2025-11-22 22:28:48,178 | INFO     | monitor loop #6148: job 0:6891571551 is in state 'finished'
[2025-11-22 23:29:40] 2025-11-22 22:28:48,179 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:29:40] 2025-11-22 22:28:48,664 | INFO     | time since job start (92340s) is within the limit (172800.0s)
[2025-11-22 23:29:40] 2025-11-22 22:28:50,671 | INFO     | time since job start (92342s) is within the limit (172800.0s)
[2025-11-22 23:29:40] 2025-11-22 22:28:50,685 | INFO     | monitor loop #6149: job 0:6891571551 is in state 'finished'
[2025-11-22 23:29:40] 2025-11-22 22:28:50,686 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:29:40] 2025-11-22 22:28:51,966 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 23:29:40] 2025-11-22 22:28:51,967 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 23:29:40] 2025-11-22 22:28:51,970 | INFO     | using path: /var/lib/boinc/slots/27/PanDA_Pilot-6891571551/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 23:29:40] 2025-11-22 22:28:51,970 | INFO     | extracted standard info from prmon json
[2025-11-22 23:29:40] 2025-11-22 22:28:51,970 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 23:29:40] 2025-11-22 22:28:51,971 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 23:29:40] 2025-11-22 22:28:52,029 | INFO     | fitting pss+swap vs Time
[2025-11-22 23:29:40] 2025-11-22 22:28:52,031 | INFO     | sum of square deviations: 1065479086884.1505
[2025-11-22 23:29:40] 2025-11-22 22:28:52,133 | INFO     | sum of deviations: 2480705815235.6514
[2025-11-22 23:29:40] 2025-11-22 22:28:52,134 | INFO     | mean x: 1763804419.3518887
[2025-11-22 23:29:40] 2025-11-22 22:28:52,134 | INFO     | mean y: 2848749.2266401593
[2025-11-22 23:29:40] 2025-11-22 22:28:52,134 | INFO     | intersect: -4103735728.954035
[2025-11-22 23:29:40] 2025-11-22 22:28:52,136 | INFO     | chi2: 19.88739301928907
[2025-11-22 23:29:40] 2025-11-22 22:28:52,138 | INFO     | sum of square deviations: 1054923492544.9789
[2025-11-22 23:29:40] 2025-11-22 22:28:52,224 | INFO     | sum of deviations: 2978837362126.3496
[2025-11-22 23:29:40] 2025-11-22 22:28:52,225 | INFO     | mean x: 1763804266.856383
[2025-11-22 23:29:40] 2025-11-22 22:28:52,225 | INFO     | mean y: 2855944.307180851
[2025-11-22 23:29:40] 2025-11-22 22:28:52,225 | INFO     | intersect: -4977681589.191392
[2025-11-22 23:29:40] 2025-11-22 22:28:52,227 | INFO     | chi2: 16.6287774598059
[2025-11-22 23:29:40] 2025-11-22 22:28:52,227 | INFO     | current chi2=16.6287774598059 (change=16.38533294093697 %)
[2025-11-22 23:29:40] 2025-11-22 22:28:52,228 | INFO     | right removable region: 1503
[2025-11-22 23:29:40] 2025-11-22 22:28:52,230 | INFO     | sum of square deviations: 1054922248144.9785
[2025-11-22 23:29:40] 2025-11-22 22:28:52,302 | INFO     | sum of deviations: 1940709007026.8872
[2025-11-22 23:29:40] 2025-11-22 22:28:52,303 | INFO     | mean x: 1763804571.856383
[2025-11-22 23:29:40] 2025-11-22 22:28:52,303 | INFO     | mean y: 2856547.4022606383
[2025-11-22 23:29:40] 2025-11-22 22:28:52,303 | INFO     | intersect: -3241962134.975605
[2025-11-22 23:29:40] 2025-11-22 22:28:52,305 | INFO     | chi2: 16.528758246712314
[2025-11-22 23:29:40] 2025-11-22 22:28:52,305 | INFO     | current chi2=16.528758246712314 (change=16.8882606650312 %)
[2025-11-22 23:29:40] 2025-11-22 22:28:52,305 | INFO     | left removable region: 10
[2025-11-22 23:29:40] 2025-11-22 22:28:52,307 | INFO     | sum of square deviations: 1031945248932.6886
[2025-11-22 23:29:40] 2025-11-22 22:28:52,381 | INFO     | sum of deviations: 2354078395717.2363
[2025-11-22 23:29:40] 2025-11-22 22:28:52,381 | INFO     | mean x: 1763804541.361688
[2025-11-22 23:29:40] 2025-11-22 22:28:52,382 | INFO     | mean y: 2867940.049564635
[2025-11-22 23:29:40] 2025-11-22 22:28:52,382 | INFO     | intersect: -4020731344.2941847
[2025-11-22 23:29:40] 2025-11-22 22:28:52,384 | INFO     | chi2: 12.216317726604537
[2025-11-22 23:29:40] 2025-11-22 22:28:52,384 | INFO     | current memory leak: 2.28 B/s (using 1493 data points, chi2=12.22)
[2025-11-22 23:29:40] 2025-11-22 22:28:52,386 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-22 23:29:40] 2025-11-22 22:28:52,387 | INFO     | ..............................
[2025-11-22 23:29:40] 2025-11-22 22:28:52,387 | INFO     | . Timing measurements:
[2025-11-22 23:29:40] 2025-11-22 22:28:52,387 | INFO     | . get job = 0 s
[2025-11-22 23:29:40] 2025-11-22 22:28:52,387 | INFO     | . initial setup = 2 s
[2025-11-22 23:29:40] 2025-11-22 22:28:52,387 | INFO     | . payload setup = 42 s
[2025-11-22 23:29:40] 2025-11-22 22:28:52,387 | INFO     | . stage-in = 0 s
[2025-11-22 23:29:40] 2025-11-22 22:28:52,387 | INFO     | . payload execution = 92146 s
[2025-11-22 23:29:40] 2025-11-22 22:28:52,387 | INFO     | . stage-out = 6 s
[2025-11-22 23:29:40] 2025-11-22 22:28:52,387 | INFO     | . log creation = 2 s
[2025-11-22 23:29:40] 2025-11-22 22:28:52,387 | INFO     | ..............................
[2025-11-22 23:29:40] 2025-11-22 22:28:52,519 | INFO     | 
[2025-11-22 23:29:40] 2025-11-22 22:28:52,520 | INFO     | job summary report
[2025-11-22 23:29:40] 2025-11-22 22:28:52,520 | INFO     | --------------------------------------------------
[2025-11-22 23:29:40] 2025-11-22 22:28:52,520 | INFO     | PanDA job id: 6891571551
[2025-11-22 23:29:40] 2025-11-22 22:28:52,520 | INFO     | task id: 47493068
[2025-11-22 23:29:40] 2025-11-22 22:28:52,520 | INFO     | errors: (none)
[2025-11-22 23:29:40] 2025-11-22 22:28:52,520 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 23:29:40] 2025-11-22 22:28:52,520 | INFO     | pilot state: finished 
[2025-11-22 23:29:40] 2025-11-22 22:28:52,520 | INFO     | transexitcode: 0
[2025-11-22 23:29:40] 2025-11-22 22:28:52,520 | INFO     | exeerrorcode: 0
[2025-11-22 23:29:40] 2025-11-22 22:28:52,521 | INFO     | exeerrordiag: 
[2025-11-22 23:29:40] 2025-11-22 22:28:52,521 | INFO     | exitcode: 0
[2025-11-22 23:29:40] 2025-11-22 22:28:52,521 | INFO     | exitmsg: OK
[2025-11-22 23:29:40] 2025-11-22 22:28:52,521 | INFO     | cpuconsumptiontime: 341285 s
[2025-11-22 23:29:40] 2025-11-22 22:28:52,521 | INFO     | nevents: 1000
[2025-11-22 23:29:40] 2025-11-22 22:28:52,521 | INFO     | neventsw: 0
[2025-11-22 23:29:40] 2025-11-22 22:28:52,521 | INFO     | pid: 22654
[2025-11-22 23:29:40] 2025-11-22 22:28:52,521 | INFO     | pgrp: 22654
[2025-11-22 23:29:40] 2025-11-22 22:28:52,521 | INFO     | corecount: 8
[2025-11-22 23:29:40] 2025-11-22 22:28:52,521 | INFO     | event service: False
[2025-11-22 23:29:40] 2025-11-22 22:28:52,521 | INFO     | sizes: {0: 2297962, 1: 2298819, 2: 2298819, 13: 2298847, 14: 2299165, 23: 2299193, 92193: 2363576, 92201: 2372572, 92202: 2372628, 92304: 2372874}
[2025-11-22 23:29:40] 2025-11-22 22:28:52,522 | INFO     | --------------------------------------------------
[2025-11-22 23:29:40] 2025-11-22 22:28:52,522 | INFO     | 
[2025-11-22 23:29:40] 2025-11-22 22:28:52,522 | INFO     | executing command: ls -lF /var/lib/boinc/slots/27
[2025-11-22 23:29:40] 2025-11-22 22:28:52,678 | INFO     | time since job start (92344s) is within the limit (172800.0s)
[2025-11-22 23:29:40] 2025-11-22 22:28:52,756 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,756 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,756 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,756 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,756 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,757 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,757 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,757 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,757 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,757 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,757 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,757 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,757 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,757 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,757 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,757 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,758 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,758 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 23:29:40] 2025-11-22 22:28:52,758 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,758 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 23:29:40] 2025-11-22 22:28:52,758 | INFO     | job 6891571551 has completed (purged errors)
[2025-11-22 23:29:40] 2025-11-22 22:28:52,758 | INFO     | overall cleanup function is called
[2025-11-22 23:29:40] 2025-11-22 22:28:53,778 | INFO     | --- collectZombieJob: --- 10, [22654]
[2025-11-22 23:29:40] 2025-11-22 22:28:53,779 | INFO     | zombie collector waiting for pid 22654
[2025-11-22 23:29:40] 2025-11-22 22:28:53,779 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 23:29:40] 2025-11-22 22:28:53,779 | INFO     | collected zombie processes
[2025-11-22 23:29:40] 2025-11-22 22:28:53,779 | INFO     | will attempt to kill all subprocesses of pid=22654
[2025-11-22 23:29:40] 2025-11-22 22:28:53,901 | INFO     | process IDs to be killed: [22654] (in reverse order)
[2025-11-22 23:29:40] 2025-11-22 22:28:54,845 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 23:29:40] 2025-11-22 22:28:54,845 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 23:29:40] 2025-11-22 22:28:54,849 | INFO     | did not find any defunct processes belonging to 22654
[2025-11-22 23:29:40] 2025-11-22 22:28:54,854 | INFO     | did not find any defunct processes belonging to 22654
[2025-11-22 23:29:40] 2025-11-22 22:28:54,903 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 23:29:40] 2025-11-22 22:28:54,903 | INFO     | ready for new job
[2025-11-22 23:29:40] 2025-11-22 22:28:54,903 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 23:29:40] 2025-11-22 22:28:54,910 | INFO     | ***************************************
[2025-11-22 23:29:40] 2025-11-22 22:28:54,911 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 23:29:40] 2025-11-22 22:28:54,911 | INFO     | ***************************************
[2025-11-22 23:29:40] 2025-11-22 22:28:54,911 | INFO     | 
[2025-11-22 23:29:40] 2025-11-22 22:28:54,911 | INFO     | pilot is running in a VM
[2025-11-22 23:29:40] 2025-11-22 22:28:54,912 | INFO     | architecture information:
[2025-11-22 23:29:40] 2025-11-22 22:28:54,920 | INFO     | executing command: cat /etc/os-release
[2025-11-22 23:29:40] 2025-11-22 22:28:55,237 | INFO     | cat /etc/os-release:
[2025-11-22 23:29:40] NAME="CentOS Linux"
[2025-11-22 23:29:40] VERSION="7 (Core)"
[2025-11-22 23:29:40] ID="centos"
[2025-11-22 23:29:40] ID_LIKE="rhel fedora"
[2025-11-22 23:29:40] VERSION_ID="7"
[2025-11-22 23:29:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 23:29:40] ANSI_COLOR="0;31"
[2025-11-22 23:29:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 23:29:40] HOME_URL="https://www.centos.org/"
[2025-11-22 23:29:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 23:29:40] 
[2025-11-22 23:29:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 23:29:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 23:29:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 23:29:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 23:29:40] 
[2025-11-22 23:29:40] 2025-11-22 22:28:55,237 | INFO     | ***************************************
[2025-11-22 23:29:40] 2025-11-22 22:28:55,741 | INFO     | executing command: df -mP /var/lib/boinc/slots/27
[2025-11-22 23:29:40] 2025-11-22 22:28:56,026 | INFO     | sufficient remaining disk space (495164850176 B)
[2025-11-22 23:29:40] 2025-11-22 22:28:56,026 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 23:29:40] 2025-11-22 22:28:56,027 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 23:29:40] 2025-11-22 22:28:56,027 | INFO     | update_server=False
[2025-11-22 23:29:40] 2025-11-22 22:28:56,027 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 23:29:40] 2025-11-22 22:28:56,030 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 23:29:40] 2025-11-22 22:28:56,683 | INFO     | all data control threads have been joined
[2025-11-22 23:29:40] 2025-11-22 22:28:56,712 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:29:40] 2025-11-22 22:28:56,713 | INFO     | aborting loop
[2025-11-22 23:29:40] 2025-11-22 22:28:57,033 | INFO     | [job] retrieve thread has finished
[2025-11-22 23:29:40] 2025-11-22 22:28:57,041 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 23:29:40] 2025-11-22 22:28:57,147 | INFO     | all job control threads have been joined
[2025-11-22 23:29:40] 2025-11-22 22:28:57,180 | INFO     | all payload control threads have been joined
[2025-11-22 23:29:40] 2025-11-22 22:28:57,199 | INFO     | [data] copytool_in thread has finished
[2025-11-22 23:29:40] 2025-11-22 22:28:57,422 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 23:29:40] 2025-11-22 22:28:57,513 | INFO     | [payload] failed_post thread has finished
[2025-11-22 23:29:40] 2025-11-22 22:28:57,530 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:29:40] 2025-11-22 22:28:57,646 | INFO     | [payload] validate_post thread has finished
[2025-11-22 23:29:40] 2025-11-22 22:28:57,689 | INFO     | [data] control thread has finished
[2025-11-22 23:29:40] 2025-11-22 22:28:57,691 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 23:29:40] 2025-11-22 22:28:57,719 | INFO     | [job] job monitor thread has finished
[2025-11-22 23:29:40] 2025-11-22 22:28:57,949 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 23:29:40] 2025-11-22 22:28:57,979 | INFO     | [job] validate thread has finished
[2025-11-22 23:29:40] 2025-11-22 22:28:57,982 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 23:29:40] 2025-11-22 22:28:58,153 | INFO     | [job] control thread has finished
[2025-11-22 23:29:40] 2025-11-22 22:28:58,186 | INFO     | [payload] control thread has finished
[2025-11-22 23:29:40] 2025-11-22 22:28:58,536 | INFO     | [job] queue monitor thread has finished
[2025-11-22 23:29:40] 2025-11-22 22:28:59,428 | INFO     | [data] copytool_out thread has finished
[2025-11-22 23:29:40] 2025-11-22 22:29:00,043 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 23:29:40] 2025-11-22 22:29:25,881 | INFO     | PID=8092 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 23:29:40] 2025-11-22 22:29:25,882 | INFO     | .. there are 9 such processes running
[2025-11-22 23:29:40] 2025-11-22 22:29:25,883 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 23:29:40] 2025-11-22 22:29:25,883 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 23:29:40] 2025-11-22 22:29:25,884 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 23:29:40] 2025-11-22 22:29:29,238 | INFO     | [monitor] cgroup control has ended
[2025-11-22 23:29:40] 2025-11-22 22:29:30,302 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140040543668032)>', '<ExcThread(monitor, started 140039874926336)>']
[2025-11-22 23:29:40] 2025-11-22 22:29:30,913 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 23:29:40] 2025-11-22 22:29:30,914 | INFO     | [monitor] control thread has ended
[2025-11-22 23:29:40] 2025-11-22 22:29:35,327 | INFO     | all workflow threads have been joined
[2025-11-22 23:29:40] 2025-11-22 22:29:35,328 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 23:29:40] 2025-11-22 22:29:35,328 | INFO     | traces error code: 0
[2025-11-22 23:29:40] 2025-11-22 22:29:35,328 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 23:29:40] 2025-11-22 22:29:35,801 [wrapper] ==== pilot stdout END ====
[2025-11-22 23:29:40] 2025-11-22 22:29:35,900 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 23:29:40] 2025-11-22 22:29:35,994 [wrapper] pilotpid: 8092
[2025-11-22 23:29:40] 2025-11-22 22:29:36,085 [wrapper] Pilot exit status: 0
[2025-11-22 23:29:40] 2025-11-22 22:29:36,484 [wrapper] pandaids: 6891571551
[2025-11-22 23:29:40] 2025-11-22 22:29:37,231 [wrapper] cleanup supervisor_pilot 15913 8093
[2025-11-22 23:29:40] 2025-11-22 22:29:37,288 [wrapper] Test setup, not cleaning
[2025-11-22 23:29:40] 2025-11-22 22:29:37,366 [wrapper] apfmon messages muted
[2025-11-22 23:29:40] 2025-11-22 22:29:37,440 [wrapper] ==== wrapper stdout END ====
[2025-11-22 23:29:40] 2025-11-22 22:29:37,485 [wrapper] ==== wrapper stderr END ====
[2025-11-22 23:29:40]  *** Error codes and diagnostics ***
[2025-11-22 23:29:40]     "exeErrorCode": 0,
[2025-11-22 23:29:40]     "exeErrorDiag": "",
[2025-11-22 23:29:40]     "pilotErrorCode": 0,
[2025-11-22 23:29:40]     "pilotErrorDiag": "",
[2025-11-22 23:29:40]  *** Listing of results directory ***
[2025-11-22 23:29:40] total 1327564
[2025-11-22 23:29:40] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-22 23:29:40] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:50 queuedata.json
[2025-11-22 23:29:40] -rwx------. 1 boinc boinc     36292 Nov 18 16:52 runpilot2-wrapper.sh
[2025-11-22 23:29:40] -rw-r--r--. 1 boinc boinc       100 Nov 21 21:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 23:29:40] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 21:49 run_atlas
[2025-11-22 23:29:40] -rw-r--r--. 1 boinc boinc       105 Nov 21 21:49 job.xml
[2025-11-22 23:29:40] -rw-r--r--. 2 boinc boinc 409977006 Nov 21 21:49 EVNT.47493065._000289.pool.root.1
[2025-11-22 23:29:40] -rw-r--r--. 2 boinc boinc    590102 Nov 21 21:49 input.tar.gz
[2025-11-22 23:29:40] -rw-r--r--. 1 boinc boinc      6390 Nov 21 21:49 init_data.xml
[2025-11-22 23:29:40] -rw-r--r--. 2 boinc boinc     15120 Nov 21 21:49 start_atlas.sh
[2025-11-22 23:29:40] drwxrwx--x. 2 boinc boinc        68 Nov 21 21:49 shared
[2025-11-22 23:29:40] -rw-r--r--. 1 boinc boinc         0 Nov 21 21:49 boinc_lockfile
[2025-11-22 23:29:40] -rw-r--r--. 1 boinc boinc      2770 Nov 21 21:49 pandaJob.out
[2025-11-22 23:29:40] -rw-------. 1 boinc boinc    989798 Nov 21 21:49 agis_schedconf.cvmfs.json
[2025-11-22 23:29:40] drwx------. 5 boinc boinc      4096 Nov 21 21:49 pilot3
[2025-11-22 23:29:40] -rw-r--r--. 1 boinc boinc       533 Nov 22 23:00 boinc_task_state.xml
[2025-11-22 23:29:40] -rw-------. 1 boinc boinc 915780505 Nov 22 23:25 HITS.47493068._002881.pool.root.1
[2025-11-22 23:29:40] -rw-------. 1 boinc boinc      1033 Nov 22 23:26 memory_monitor_summary.json
[2025-11-22 23:29:40] -rw-------. 1 boinc boinc   1526164 Nov 22 23:27 agis_ddmendpoints.agis.ALL.json
[2025-11-22 23:29:40] -rw-------. 1 boinc boinc   2572080 Nov 22 23:27 log.47493068._002881.job.log.tgz.1
[2025-11-22 23:29:40] -rw-------. 1 boinc boinc      8639 Nov 22 23:28 heartbeat.json
[2025-11-22 23:29:40] -rw-r--r--. 1 boinc boinc      8192 Nov 22 23:29 boinc_mmap_file
[2025-11-22 23:29:40] -rw-r--r--. 1 boinc boinc        29 Nov 22 23:29 wrapper_checkpoint.txt
[2025-11-22 23:29:40] -rw-------. 1 boinc boinc        95 Nov 22 23:29 pilot_heartbeat.json
[2025-11-22 23:29:40] -rw-------. 1 boinc boinc      4884 Nov 22 23:29 pilotlog.txt
[2025-11-22 23:29:40] -rw-------. 1 boinc boinc  12303033 Nov 22 23:29 log.47493068._002881.job.log.1
[2025-11-22 23:29:40] -rw-------. 1 boinc boinc       353 Nov 22 23:29 output.list
[2025-11-22 23:29:40] -rw-r--r--. 1 boinc boinc       620 Nov 22 23:29 runtime_log
[2025-11-22 23:29:40] -rw-------. 1 boinc boinc  14899200 Nov 22 23:29 result.tar.gz
[2025-11-22 23:29:40] -rw-r--r--. 1 boinc boinc      8717 Nov 22 23:29 runtime_log.err
[2025-11-22 23:29:40] -rw-------. 1 boinc boinc       662 Nov 22 23:29 MasNDmaBdf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyPFKDmqx3TRn.diag
[2025-11-22 23:29:40] -rw-r--r--. 1 boinc boinc     21424 Nov 22 23:29 stderr.txt
[2025-11-22 23:29:40] HITS file was successfully produced:
[2025-11-22 23:29:40] -rw-------. 1 boinc boinc 915780505 Nov 22 23:25 shared/HITS.pool.root.1
[2025-11-22 23:29:40]  *** Contents of shared directory: ***
[2025-11-22 23:29:40] total 1309840
[2025-11-22 23:29:40] -rw-r--r--. 2 boinc boinc 409977006 Nov 21 21:49 ATLAS.root_0
[2025-11-22 23:29:40] -rw-r--r--. 2 boinc boinc    590102 Nov 21 21:49 input.tar.gz
[2025-11-22 23:29:40] -rw-r--r--. 2 boinc boinc     15120 Nov 21 21:49 start_atlas.sh
[2025-11-22 23:29:40] -rw-------. 1 boinc boinc 915780505 Nov 22 23:25 HITS.pool.root.1
[2025-11-22 23:29:40] -rw-------. 1 boinc boinc  14899200 Nov 22 23:29 result.tar.gz
23:29:41 (1423): run_atlas exited; CPU time 341795.844627
23:29:41 (1423): called boinc_finish(0)

</stderr_txt>
]]>

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