Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:53:44 (1641501): wrapper (7.7.26015): starting
10:53:44 (1641501): wrapper: running run_atlas (--nthreads 8)
[2025-11-18 10:53:44] Arguments: --nthreads 8
[2025-11-18 10:53:44] Threads: 8
[2025-11-18 10:53:44] Checking for CVMFS
[2025-11-18 10:53:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 10:53:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 10:53:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 10:53:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 10:53:45] 2.11.3.0 137784 17253 224448 153010 0 321 26015760 45568001 8475 130560 0 103481335 99.810 62192606 20960 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-18 10:53:45] CVMFS is ok
[2025-11-18 10:53:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 10:53:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 10:53:45] Further information can be found at the LHC@home message board.
[2025-11-18 10:53:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 10:53:45] Checking for apptainer binary...
[2025-11-18 10:53:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 10:53:45] Running /usr/bin/apptainer --version
[2025-11-18 10:53:45] apptainer version 1.4.1-1.el9
[2025-11-18 10:53:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 10:53:46] wns0008.triumf.lcg
[2025-11-18 10:53:46] apptainer works
[2025-11-18 10:53:46] Set ATHENA_PROC_NUMBER=8
[2025-11-18 10:53:46] Set ATHENA_CORE_NUMBER=8
[2025-11-18 10:53:46] Starting ATLAS job with PandaID=6891584409
[2025-11-18 10:53:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 10:59:35]  *** The last 200 lines of the pilot log: ***
[2025-11-18 10:59:35] 2025-11-18 18:59:00,120 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 10:59:35] 2025-11-18 18:59:00,121 | WARNING  | wrong length of table data, x=[1763492118.0, 1763492179.0], y=[1258.0, 372322.0] (must be same and length>=4)
[2025-11-18 10:59:35] 2025-11-18 18:59:00,122 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | ..............................
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . Timing measurements:
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . get job = 0 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . initial setup = 3 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . payload setup = 22 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . stage-in = 0 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . payload execution = 114 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . stage-out = 0 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,124 | INFO     | . log creation = 0 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,124 | INFO     | ..............................
[2025-11-18 10:59:35] 2025-11-18 18:59:00,124 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 10:59:35] 2025-11-18 18:59:00,124 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891584409/pilotlog.txt
[2025-11-18 10:59:35] 2025-11-18 18:59:00,137 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-18 10:59:35] - Log from pilotlog.txt -
[2025-11-18 10:59:35] 2025-11-18 18:59:00,119 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891584409/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 10:59:35] 2025-11-18 18:59:00,120 | INFO     | extracted standard info from prmon json
[2025-11-18 10:59:35] 2025-11-18 18:59:00,120 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 10:59:35] 2025-11-18 18:59:00,120 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 10:59:35] 2025-11-18 18:59:00,120 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 10:59:35] 2025-11-18 18:59:00,120 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 10:59:35] 2025-11-18 18:59:00,121 | WARNING  | wrong length of table data, x=[1763492118.0, 1763492179.0], y=[1258.0, 372322.0] (must be same and length>=4)
[2025-11-18 10:59:35] 2025-11-18 18:59:00,122 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | ..............................
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . Timing measurements:
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . get job = 0 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . initial setup = 3 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . payload setup = 22 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . stage-in = 0 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . payload execution = 114 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . stage-out = 0 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,124 | INFO     | . log creation = 0 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,124 | INFO     | ..............................
[2025-11-18 10:59:35] 2025-11-18 18:59:00,124 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 10:59:35] 2025-11-18 18:59:00,124 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891584409/pilotlog.txt
[2025-11-18 10:59:35] 2025-11-18 18:59:00,137 | WARNING  | 
[2025-11-18 10:59:35] [begin log extracts]
[2025-11-18 10:59:35] - Log from pilotlog.txt -
[2025-11-18 10:59:35] 2025-11-18 18:59:00,119 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891584409/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 10:59:35] 2025-11-18 18:59:00,120 | INFO     | extracted standard info from prmon json
[2025-11-18 10:59:35] 2025-11-18 18:59:00,120 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 10:59:35] 2025-11-18 18:59:00,120 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 10:59:35] 2025-11-18 18:59:00,120 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 10:59:35] 2025-11-18 18:59:00,120 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 10:59:35] 2025-11-18 18:59:00,121 | WARNING  | wrong length of table data, x=[1763492118.0, 1763492179.0], y=[1258.0, 372322.0] (must be same and length>=4)
[2025-11-18 10:59:35] 2025-11-18 18:59:00,122 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | ..............................
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . Timing measurements:
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . get job = 0 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . initial setup = 3 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . payload setup = 22 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . stage-in = 0 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . payload execution = 114 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,123 | INFO     | . stage-out = 0 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,124 | INFO     | . log creation = 0 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,124 | INFO     | ..............................
[2025-11-18 10:59:35] 2025-11-18 18:59:00,124 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 10:59:35] 2025-11-18 18:59:00,124 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891584409/pilotlog.txt
[2025-11-18 10:59:35] [end log extracts]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,137 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-18 10:59:35] 2025-11-18 18:59:00,138 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-18 10:59:35] 2025-11-18 18:59:00,566 | INFO     | 
[2025-11-18 10:59:35] 2025-11-18 18:59:00,566 | INFO     | job summary report
[2025-11-18 10:59:35] 2025-11-18 18:59:00,566 | INFO     | --------------------------------------------------
[2025-11-18 10:59:35] 2025-11-18 18:59:00,566 | INFO     | PanDA job id: 6891584409
[2025-11-18 10:59:35] 2025-11-18 18:59:00,566 | INFO     | task id: 47493068
[2025-11-18 10:59:35] 2025-11-18 18:59:00,567 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-18 10:56:39,899 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-18 10:59:35] 2025-11-18 18:59:00,567 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-18 10:59:35] 2025-11-18 18:59:00,567 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-18 10:59:35] 2025-11-18 18:59:00,567 | INFO     | pilot state: failed 
[2025-11-18 10:59:35] 2025-11-18 18:59:00,567 | INFO     | transexitcode: 65
[2025-11-18 10:59:35] 2025-11-18 18:59:00,567 | INFO     | exeerrorcode: 65
[2025-11-18 10:59:35] 2025-11-18 18:59:00,567 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-18 10:59:35] 2025-11-18 18:59:00,567 | INFO     | exitcode: 65
[2025-11-18 10:59:35] 2025-11-18 18:59:00,567 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-18 10:59:35] 2025-11-18 18:59:00,567 | INFO     | cpuconsumptiontime: 51 s
[2025-11-18 10:59:35] 2025-11-18 18:59:00,567 | INFO     | nevents: 0
[2025-11-18 10:59:35] 2025-11-18 18:59:00,567 | INFO     | neventsw: 0
[2025-11-18 10:59:35] 2025-11-18 18:59:00,567 | INFO     | pid: 1651718
[2025-11-18 10:59:35] 2025-11-18 18:59:00,567 | INFO     | pgrp: 1651718
[2025-11-18 10:59:35] 2025-11-18 18:59:00,568 | INFO     | corecount: 8
[2025-11-18 10:59:35] 2025-11-18 18:59:00,568 | INFO     | event service: False
[2025-11-18 10:59:35] 2025-11-18 18:59:00,568 | INFO     | sizes: {0: 2297197, 9: 2297459, 11: 2297487, 140: 2323012, 141: 2327302, 144: 2327330, 273: 2327652}
[2025-11-18 10:59:35] 2025-11-18 18:59:00,568 | INFO     | --------------------------------------------------
[2025-11-18 10:59:35] 2025-11-18 18:59:00,568 | INFO     | 
[2025-11-18 10:59:35] 2025-11-18 18:59:00,568 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-18 10:59:35] 2025-11-18 18:59:00,597 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,597 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,597 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,597 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,598 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,598 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,598 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,598 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,598 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,598 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,598 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,598 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,598 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,598 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,598 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,598 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,598 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,599 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-18 10:59:35] 2025-11-18 18:59:00,599 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,599 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-18 10:59:35] 2025-11-18 18:59:00,599 | INFO     | job 6891584409 has completed (purged errors)
[2025-11-18 10:59:35] 2025-11-18 18:59:00,599 | INFO     | overall cleanup function is called
[2025-11-18 10:59:35] 2025-11-18 18:59:01,610 | INFO     | --- collectZombieJob: --- 10, [1651718]
[2025-11-18 10:59:35] 2025-11-18 18:59:01,610 | INFO     | zombie collector waiting for pid 1651718
[2025-11-18 10:59:35] 2025-11-18 18:59:01,610 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-18 10:59:35] 2025-11-18 18:59:01,610 | INFO     | collected zombie processes
[2025-11-18 10:59:35] 2025-11-18 18:59:01,610 | INFO     | will attempt to kill all subprocesses of pid=1651718
[2025-11-18 10:59:35] 2025-11-18 18:59:02,087 | INFO     | process IDs to be killed: [1651718] (in reverse order)
[2025-11-18 10:59:35] 2025-11-18 18:59:02,190 | WARNING  | found no corresponding commands to process id(s)
[2025-11-18 10:59:35] 2025-11-18 18:59:02,191 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-18 10:59:35] 2025-11-18 18:59:02,236 | INFO     | did not find any defunct processes belonging to 1651718
[2025-11-18 10:59:35] 2025-11-18 18:59:02,263 | INFO     | did not find any defunct processes belonging to 1651718
[2025-11-18 10:59:35] 2025-11-18 18:59:02,281 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-18 10:59:35] 2025-11-18 18:59:02,282 | INFO     | ready for new job
[2025-11-18 10:59:35] 2025-11-18 18:59:02,282 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-18 10:59:35] 2025-11-18 18:59:02,284 | INFO     | ***************************************
[2025-11-18 10:59:35] 2025-11-18 18:59:02,284 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-18 10:59:35] 2025-11-18 18:59:02,284 | INFO     | ***************************************
[2025-11-18 10:59:35] 2025-11-18 18:59:02,284 | INFO     | 
[2025-11-18 10:59:35] 2025-11-18 18:59:02,285 | INFO     | architecture information:
[2025-11-18 10:59:35] 2025-11-18 18:59:02,286 | INFO     | executing command: cat /etc/os-release
[2025-11-18 10:59:35] 2025-11-18 18:59:02,360 | INFO     | cat /etc/os-release:
[2025-11-18 10:59:35] NAME="CentOS Linux"
[2025-11-18 10:59:35] VERSION="7 (Core)"
[2025-11-18 10:59:35] ID="centos"
[2025-11-18 10:59:35] ID_LIKE="rhel fedora"
[2025-11-18 10:59:35] VERSION_ID="7"
[2025-11-18 10:59:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 10:59:35] ANSI_COLOR="0;31"
[2025-11-18 10:59:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 10:59:35] HOME_URL="https://www.centos.org/"
[2025-11-18 10:59:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 10:59:35] 
[2025-11-18 10:59:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 10:59:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 10:59:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 10:59:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 10:59:35] 
[2025-11-18 10:59:35] 2025-11-18 18:59:02,360 | INFO     | ***************************************
[2025-11-18 10:59:35] 2025-11-18 18:59:02,863 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-18 10:59:35] 2025-11-18 18:59:02,877 | INFO     | sufficient remaining disk space (1343507922944 B)
[2025-11-18 10:59:35] 2025-11-18 18:59:02,877 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 10:59:35] 2025-11-18 18:59:02,877 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 10:59:35] 2025-11-18 18:59:02,877 | INFO     | update_server=False
[2025-11-18 10:59:35] 2025-11-18 18:59:02,877 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 10:59:35] 2025-11-18 18:59:03,014 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 10:59:35] 2025-11-18 18:59:03,014 | INFO     | aborting loop
[2025-11-18 10:59:35] 2025-11-18 18:59:03,101 | INFO     | all job control threads have been joined
[2025-11-18 10:59:35] 2025-11-18 18:59:03,107 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 10:59:35] 2025-11-18 18:59:03,191 | INFO     | all data control threads have been joined
[2025-11-18 10:59:35] 2025-11-18 18:59:03,883 | INFO     | [job] retrieve thread has finished
[2025-11-18 10:59:35] 2025-11-18 18:59:03,895 | INFO     | [data] copytool_in thread has finished
[2025-11-18 10:59:35] 2025-11-18 18:59:03,973 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 10:59:35] 2025-11-18 18:59:04,030 | INFO     | [job] job monitor thread has finished
[2025-11-18 10:59:35] 2025-11-18 18:59:04,053 | INFO     | all payload control threads have been joined
[2025-11-18 10:59:35] 2025-11-18 18:59:04,057 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 10:59:35] 2025-11-18 18:59:04,097 | INFO     | [job] validate thread has finished
[2025-11-18 10:59:35] 2025-11-18 18:59:04,107 | INFO     | [job] control thread has finished
[2025-11-18 10:59:35] 2025-11-18 18:59:04,114 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 10:59:35] 2025-11-18 18:59:04,197 | INFO     | [data] control thread has finished
[2025-11-18 10:59:35] 2025-11-18 18:59:04,341 | INFO     | [payload] validate_post thread has finished
[2025-11-18 10:59:35] 2025-11-18 18:59:04,421 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 10:59:35] 2025-11-18 18:59:04,486 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 10:59:35] 2025-11-18 18:59:05,059 | INFO     | [payload] control thread has finished
[2025-11-18 10:59:35] 2025-11-18 18:59:05,327 | INFO     | [payload] failed_post thread has finished
[2025-11-18 10:59:35] 2025-11-18 18:59:05,392 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 10:59:35] 2025-11-18 18:59:05,786 | INFO     | [monitor] cgroup control has ended
[2025-11-18 10:59:35] 2025-11-18 18:59:05,979 | INFO     | [data] copytool_out thread has finished
[2025-11-18 10:59:35] 2025-11-18 18:59:06,398 | INFO     | [job] queue monitor thread has finished
[2025-11-18 10:59:35] 2025-11-18 18:59:07,116 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 10:59:35] 2025-11-18 18:59:07,627 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140596841420608)>', '<ExcThread(monitor, started 140596442273536)>']
[2025-11-18 10:59:35] 2025-11-18 18:59:12,652 | INFO     | all workflow threads have been joined
[2025-11-18 10:59:35] 2025-11-18 18:59:12,653 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 10:59:35] 2025-11-18 18:59:12,653 | INFO     | traces error code: 0
[2025-11-18 10:59:35] 2025-11-18 18:59:12,654 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 10:59:35] 2025-11-18 18:59:33,411 | INFO     | PID=1645162 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-18 10:59:35] 2025-11-18 18:59:33,412 | INFO     | .. there are 12 such processes running
[2025-11-18 10:59:35] 2025-11-18 18:59:33,413 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 10:59:35] 2025-11-18 18:59:33,413 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 10:59:35] 2025-11-18 18:59:33,413 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 10:59:35] 2025-11-18 18:59:33,413 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 10:59:35] 2025-11-18 18:59:33,413 | INFO     | [monitor] control thread has ended
[2025-11-18 10:59:35] 2025-11-18 18:59:34,196 [wrapper] ==== pilot stdout END ====
[2025-11-18 10:59:35] 2025-11-18 18:59:34,227 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 10:59:35] 2025-11-18 18:59:34,241 [wrapper] pilotpid: 1645162
[2025-11-18 10:59:35] 2025-11-18 18:59:34,297 [wrapper] Pilot exit status: 0
[2025-11-18 10:59:35] 2025-11-18 18:59:34,463 [wrapper] pandaids: 6891584409
[2025-11-18 10:59:35] 2025-11-18 18:59:34,739 [wrapper] cleanup supervisor_pilot 1645168 1645163
[2025-11-18 10:59:35] 2025-11-18 18:59:34,764 [wrapper] Test setup, not cleaning
[2025-11-18 10:59:35] 2025-11-18 18:59:34,788 [wrapper] apfmon messages muted
[2025-11-18 10:59:35] 2025-11-18 18:59:34,827 [wrapper] ==== wrapper stdout END ====
[2025-11-18 10:59:35] 2025-11-18 18:59:34,866 [wrapper] ==== wrapper stderr END ====
[2025-11-18 10:59:35]  *** Error codes and diagnostics ***
[2025-11-18 10:59:35]     "exeErrorCode": 65,
[2025-11-18 10:59:35]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-18 10:59:35]     "pilotErrorCode": 1305,
[2025-11-18 10:59:35]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-18 10:59:35]  *** Listing of results directory ***
[2025-11-18 10:59:35] total 402816
[2025-11-18 10:59:35] -rw-r--r--. 1 boinc boinc    576529 Nov 18 08:45 pilot3.tar.gz
[2025-11-18 10:59:35] -rw-r--r--. 1 boinc boinc      5112 Nov 18 09:15 queuedata.json
[2025-11-18 10:59:35] -rwx------. 1 boinc boinc     36292 Nov 18 09:15 runpilot2-wrapper.sh
[2025-11-18 10:59:35] -rw-r--r--. 1 boinc boinc       100 Nov 18 10:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 10:59:35] -rwxr-xr-x. 1 boinc boinc      7986 Nov 18 10:53 run_atlas
[2025-11-18 10:59:35] -rw-r--r--. 1 boinc boinc       105 Nov 18 10:53 job.xml
[2025-11-18 10:59:35] -rw-r--r--. 2 boinc boinc 408257668 Nov 18 10:53 EVNT.47493065._000457.pool.root.1
[2025-11-18 10:59:35] -rw-r--r--. 1 boinc boinc      6444 Nov 18 10:53 init_data.xml
[2025-11-18 10:59:35] -rw-r--r--. 2 boinc boinc     15120 Nov 18 10:53 start_atlas.sh
[2025-11-18 10:59:35] drwxrwx--x. 2 boinc boinc      4096 Nov 18 10:53 shared
[2025-11-18 10:59:35] -rw-r--r--. 2 boinc boinc    590100 Nov 18 10:53 input.tar.gz
[2025-11-18 10:59:35] -rw-r--r--. 1 boinc boinc         0 Nov 18 10:53 boinc_lockfile
[2025-11-18 10:59:35] -rw-r--r--. 1 boinc boinc      2773 Nov 18 10:53 pandaJob.out
[2025-11-18 10:59:35] -rw-------. 1 boinc boinc    992798 Nov 18 10:54 agis_schedconf.cvmfs.json
[2025-11-18 10:59:35] -rw-------. 1 boinc boinc   1525063 Nov 18 10:54 agis_ddmendpoints.agis.ALL.json
[2025-11-18 10:59:35] drwx------. 5 boinc boinc      4096 Nov 18 10:54 pilot3
[2025-11-18 10:59:35] -rw-r--r--. 1 boinc boinc       524 Nov 18 10:56 boinc_task_state.xml
[2025-11-18 10:59:35] -rw-------. 1 boinc boinc       985 Nov 18 10:56 memory_monitor_summary.json
[2025-11-18 10:59:35] -rw-------. 1 boinc boinc     48990 Nov 18 10:56 log.47493068._004567.job.log.tgz.1
[2025-11-18 10:59:35] -rw-------. 1 boinc boinc     10330 Nov 18 10:59 heartbeat.json
[2025-11-18 10:59:35] -rw-r--r--. 1 boinc boinc      8192 Nov 18 10:59 boinc_mmap_file
[2025-11-18 10:59:35] -rw-r--r--. 1 boinc boinc        23 Nov 18 10:59 wrapper_checkpoint.txt
[2025-11-18 10:59:35] -rw-------. 1 boinc boinc        95 Nov 18 10:59 pilot_heartbeat.json
[2025-11-18 10:59:35] -rw-------. 1 boinc boinc       823 Nov 18 10:59 pilotlog.txt
[2025-11-18 10:59:35] -rw-------. 1 boinc boinc    104228 Nov 18 10:59 log.47493068._004567.job.log.1
[2025-11-18 10:59:35] -rw-------. 1 boinc boinc       186 Nov 18 10:59 output.list
[2025-11-18 10:59:35] -rw-r--r--. 1 boinc boinc       620 Nov 18 10:59 runtime_log
[2025-11-18 10:59:35] -rw-------. 1 boinc boinc    174080 Nov 18 10:59 result.tar.gz
[2025-11-18 10:59:35] -rw-r--r--. 1 boinc boinc      8526 Nov 18 10:59 runtime_log.err
[2025-11-18 10:59:35] -rw-------. 1 boinc boinc       645 Nov 18 10:59 QlHODmGUef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRzFKDmSHvCDo.diag
[2025-11-18 10:59:35] -rw-r--r--. 1 boinc boinc     22466 Nov 18 10:59 stderr.txt
[2025-11-18 10:59:35] No HITS result produced
[2025-11-18 10:59:35]  *** Contents of shared directory: ***
[2025-11-18 10:59:35] total 399464
[2025-11-18 10:59:35] -rw-r--r--. 2 boinc boinc 408257668 Nov 18 10:53 ATLAS.root_0
[2025-11-18 10:59:35] -rw-r--r--. 2 boinc boinc     15120 Nov 18 10:53 start_atlas.sh
[2025-11-18 10:59:35] -rw-r--r--. 2 boinc boinc    590100 Nov 18 10:53 input.tar.gz
[2025-11-18 10:59:35] -rw-------. 1 boinc boinc    174080 Nov 18 10:59 result.tar.gz
10:59:37 (1641501): run_atlas exited; CPU time 54.038265
10:59:37 (1641501): called boinc_finish(0)

</stderr_txt>
]]>

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