Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:53:20 (6615): wrapper (7.7.26015): starting
21:53:20 (6615): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 21:53:20] Arguments: --nthreads 8
[2025-11-21 21:53:20] Threads: 8
[2025-11-21 21:53:20] Checking for CVMFS
[2025-11-21 21:53:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:53:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:53:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:53:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:53:22] 2.11.2.0 9336 75748 87556 153142 2 237 16026009 25165825 4538 130560 2 22283446 99.880 13162444 1936 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 21:53:22] CVMFS is ok
[2025-11-21 21:53:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:53:22] Checking for apptainer binary...
[2025-11-21 21:53:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 21:53:22] Running /usr/bin/apptainer --version
[2025-11-21 21:53:23] apptainer version 1.3.2-1.el7
[2025-11-21 21:53:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:53:25] cg-vwn413.simple-grid.lan
[2025-11-21 21:53:25] apptainer works
[2025-11-21 21:53:25] Set ATHENA_PROC_NUMBER=8
[2025-11-21 21:53:25] Set ATHENA_CORE_NUMBER=8
[2025-11-21 21:53:25] Starting ATLAS job with PandaID=6891572634
[2025-11-21 21:53:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 23:23:57]  *** The last 200 lines of the pilot log: ***
[2025-11-22 23:23:57] 2025-11-22 22:22:55,129 | INFO     | PID=10438 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 23:23:57] 2025-11-22 22:22:55,130 | INFO     | .. there are 9 such processes running
[2025-11-22 23:23:57] 2025-11-22 22:22:56,134 | INFO     | time since job start (91551s) is within the limit (172800.0s)
[2025-11-22 23:23:57] 2025-11-22 22:22:57,621 | INFO     | monitor loop #6155: job 0:6891572634 is in state 'finished'
[2025-11-22 23:23:57] 2025-11-22 22:22:57,622 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:23:57] 2025-11-22 22:22:58,148 | INFO     | time since job start (91553s) is within the limit (172800.0s)
[2025-11-22 23:23:57] 2025-11-22 22:23:00,132 | INFO     | monitor loop #6156: job 0:6891572634 is in state 'finished'
[2025-11-22 23:23:57] 2025-11-22 22:23:00,133 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:23:57] 2025-11-22 22:23:00,159 | INFO     | time since job start (91555s) is within the limit (172800.0s)
[2025-11-22 23:23:57] 2025-11-22 22:23:02,167 | INFO     | time since job start (91557s) is within the limit (172800.0s)
[2025-11-22 23:23:57] 2025-11-22 22:23:02,653 | INFO     | monitor loop #6157: job 0:6891572634 is in state 'finished'
[2025-11-22 23:23:57] 2025-11-22 22:23:02,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:23:57] 2025-11-22 22:23:04,177 | INFO     | time since job start (91559s) is within the limit (172800.0s)
[2025-11-22 23:23:57] 2025-11-22 22:23:05,162 | INFO     | monitor loop #6158: job 0:6891572634 is in state 'finished'
[2025-11-22 23:23:57] 2025-11-22 22:23:05,163 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:23:57] 2025-11-22 22:23:06,188 | INFO     | time since job start (91561s) is within the limit (172800.0s)
[2025-11-22 23:23:57] 2025-11-22 22:23:06,434 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 23:23:57] 2025-11-22 22:23:06,436 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 23:23:57] 2025-11-22 22:23:06,437 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6891572634/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 23:23:57] 2025-11-22 22:23:06,439 | INFO     | extracted standard info from prmon json
[2025-11-22 23:23:57] 2025-11-22 22:23:06,439 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 23:23:57] 2025-11-22 22:23:06,439 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 23:23:57] 2025-11-22 22:23:06,479 | INFO     | fitting pss+swap vs Time
[2025-11-22 23:23:57] 2025-11-22 22:23:06,481 | INFO     | sum of square deviations: 1027804283146.4692
[2025-11-22 23:23:57] 2025-11-22 22:23:06,584 | INFO     | sum of deviations: 3452011342051.5713
[2025-11-22 23:23:57] 2025-11-22 22:23:06,584 | INFO     | mean x: 1763804605.1052985
[2025-11-22 23:23:57] 2025-11-22 22:23:06,585 | INFO     | mean y: 2845362.270288397
[2025-11-22 23:23:57] 2025-11-22 22:23:06,585 | INFO     | intersect: -5921116623.31973
[2025-11-22 23:23:57] 2025-11-22 22:23:06,587 | INFO     | chi2: 24.033234425336634
[2025-11-22 23:23:57] 2025-11-22 22:23:06,595 | INFO     | sum of square deviations: 1017499318137.839
[2025-11-22 23:23:57] 2025-11-22 22:23:06,670 | INFO     | sum of deviations: 3939850955011.233
[2025-11-22 23:23:57] 2025-11-22 22:23:06,671 | INFO     | mean x: 1763804452.6090176
[2025-11-22 23:23:57] 2025-11-22 22:23:06,671 | INFO     | mean y: 2852580.4152086135
[2025-11-22 23:23:57] 2025-11-22 22:23:06,671 | INFO     | intersect: -6826760504.517902
[2025-11-22 23:23:57] 2025-11-22 22:23:06,673 | INFO     | chi2: 20.87539151170014
[2025-11-22 23:23:57] 2025-11-22 22:23:06,673 | INFO     | current chi2=20.87539151170014 (change=13.139483673938578 %)
[2025-11-22 23:23:57] 2025-11-22 22:23:06,673 | INFO     | right removable region: 1485
[2025-11-22 23:23:57] 2025-11-22 22:23:06,675 | INFO     | sum of square deviations: 1017498494272.2734
[2025-11-22 23:23:57] 2025-11-22 22:23:06,743 | INFO     | sum of deviations: 2840767341194.9863
[2025-11-22 23:23:57] 2025-11-22 22:23:06,743 | INFO     | mean x: 1763804757.6076715
[2025-11-22 23:23:57] 2025-11-22 22:23:06,743 | INFO     | mean y: 2854406.3344549127
[2025-11-22 23:23:57] 2025-11-22 22:23:06,743 | INFO     | intersect: -4921535142.998315
[2025-11-22 23:23:57] 2025-11-22 22:23:06,745 | INFO     | chi2: 19.565803786010274
[2025-11-22 23:23:57] 2025-11-22 22:23:06,745 | INFO     | current chi2=19.565803786010274 (change=18.58855350163208 %)
[2025-11-22 23:23:57] 2025-11-22 22:23:06,745 | INFO     | left removable region: 10
[2025-11-22 23:23:57] 2025-11-22 22:23:06,748 | INFO     | sum of square deviations: 995069532267.1752
[2025-11-22 23:23:57] 2025-11-22 22:23:06,810 | INFO     | sum of deviations: 2908157294069.3364
[2025-11-22 23:23:57] 2025-11-22 22:23:06,810 | INFO     | mean x: 1763804727.1159322
[2025-11-22 23:23:57] 2025-11-22 22:23:06,811 | INFO     | mean y: 2871336.3430508473
[2025-11-22 23:23:57] 2025-11-22 22:23:06,811 | INFO     | intersect: -5151966005.314124
[2025-11-22 23:23:57] 2025-11-22 22:23:06,812 | INFO     | chi2: 12.291962250543182
[2025-11-22 23:23:57] 2025-11-22 22:23:06,813 | INFO     | current memory leak: 2.92 B/s (using 1475 data points, chi2=12.29)
[2025-11-22 23:23:57] 2025-11-22 22:23:06,815 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-22 23:23:57] 2025-11-22 22:23:06,816 | INFO     | ..............................
[2025-11-22 23:23:57] 2025-11-22 22:23:06,816 | INFO     | . Timing measurements:
[2025-11-22 23:23:57] 2025-11-22 22:23:06,816 | INFO     | . get job = 0 s
[2025-11-22 23:23:57] 2025-11-22 22:23:06,816 | INFO     | . initial setup = 17 s
[2025-11-22 23:23:57] 2025-11-22 22:23:06,816 | INFO     | . payload setup = 167 s
[2025-11-22 23:23:57] 2025-11-22 22:23:06,816 | INFO     | . stage-in = 0 s
[2025-11-22 23:23:57] 2025-11-22 22:23:06,816 | INFO     | . payload execution = 91065 s
[2025-11-22 23:23:57] 2025-11-22 22:23:06,816 | INFO     | . stage-out = 5 s
[2025-11-22 23:23:57] 2025-11-22 22:23:06,816 | INFO     | . log creation = 2 s
[2025-11-22 23:23:57] 2025-11-22 22:23:06,816 | INFO     | ..............................
[2025-11-22 23:23:57] 2025-11-22 22:23:07,219 | INFO     | 
[2025-11-22 23:23:57] 2025-11-22 22:23:07,220 | INFO     | job summary report
[2025-11-22 23:23:57] 2025-11-22 22:23:07,220 | INFO     | --------------------------------------------------
[2025-11-22 23:23:57] 2025-11-22 22:23:07,220 | INFO     | PanDA job id: 6891572634
[2025-11-22 23:23:57] 2025-11-22 22:23:07,220 | INFO     | task id: 47493068
[2025-11-22 23:23:57] 2025-11-22 22:23:07,220 | INFO     | errors: (none)
[2025-11-22 23:23:57] 2025-11-22 22:23:07,220 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 23:23:57] 2025-11-22 22:23:07,220 | INFO     | pilot state: finished 
[2025-11-22 23:23:57] 2025-11-22 22:23:07,220 | INFO     | transexitcode: 0
[2025-11-22 23:23:57] 2025-11-22 22:23:07,221 | INFO     | exeerrorcode: 0
[2025-11-22 23:23:57] 2025-11-22 22:23:07,221 | INFO     | exeerrordiag: 
[2025-11-22 23:23:57] 2025-11-22 22:23:07,221 | INFO     | exitcode: 0
[2025-11-22 23:23:57] 2025-11-22 22:23:07,221 | INFO     | exitmsg: OK
[2025-11-22 23:23:57] 2025-11-22 22:23:07,221 | INFO     | cpuconsumptiontime: 337731 s
[2025-11-22 23:23:57] 2025-11-22 22:23:07,221 | INFO     | nevents: 1000
[2025-11-22 23:23:57] 2025-11-22 22:23:07,221 | INFO     | neventsw: 0
[2025-11-22 23:23:57] 2025-11-22 22:23:07,221 | INFO     | pid: 17019
[2025-11-22 23:23:57] 2025-11-22 22:23:07,221 | INFO     | pgrp: 17019
[2025-11-22 23:23:57] 2025-11-22 22:23:07,221 | INFO     | corecount: 8
[2025-11-22 23:23:57] 2025-11-22 22:23:07,221 | INFO     | event service: False
[2025-11-22 23:23:57] 2025-11-22 22:23:07,221 | INFO     | sizes: {0: 2297968, 1: 2298654, 2: 2298853, 13: 2298853, 23: 2298909, 34: 2298937, 45: 2299093, 56: 2299121, 66: 2299149, 77: 2299177, 88: 2299233, 99: 2299541, 10
[2025-11-22 23:23:57] 2025-11-22 22:23:07,221 | INFO     | --------------------------------------------------
[2025-11-22 23:23:57] 2025-11-22 22:23:07,222 | INFO     | 
[2025-11-22 23:23:57] 2025-11-22 22:23:07,222 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-11-22 23:23:57] 2025-11-22 22:23:07,576 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,576 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,577 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,577 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,577 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,577 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,577 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,577 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,577 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,577 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,577 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,577 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,577 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,578 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,578 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,578 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,578 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 23:23:57] 2025-11-22 22:23:07,578 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,578 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 23:23:57] 2025-11-22 22:23:07,578 | INFO     | job 6891572634 has completed (purged errors)
[2025-11-22 23:23:57] 2025-11-22 22:23:07,579 | INFO     | overall cleanup function is called
[2025-11-22 23:23:57] 2025-11-22 22:23:08,601 | INFO     | --- collectZombieJob: --- 10, [17019]
[2025-11-22 23:23:57] 2025-11-22 22:23:08,602 | INFO     | zombie collector waiting for pid 17019
[2025-11-22 23:23:57] 2025-11-22 22:23:08,602 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 23:23:57] 2025-11-22 22:23:08,602 | INFO     | collected zombie processes
[2025-11-22 23:23:57] 2025-11-22 22:23:08,602 | INFO     | will attempt to kill all subprocesses of pid=17019
[2025-11-22 23:23:57] 2025-11-22 22:23:08,726 | INFO     | process IDs to be killed: [17019] (in reverse order)
[2025-11-22 23:23:57] 2025-11-22 22:23:09,633 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 23:23:57] 2025-11-22 22:23:09,633 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 23:23:57] 2025-11-22 22:23:09,637 | INFO     | did not find any defunct processes belonging to 17019
[2025-11-22 23:23:57] 2025-11-22 22:23:09,645 | INFO     | did not find any defunct processes belonging to 17019
[2025-11-22 23:23:57] 2025-11-22 22:23:09,692 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 23:23:57] 2025-11-22 22:23:09,692 | INFO     | ready for new job
[2025-11-22 23:23:57] 2025-11-22 22:23:09,692 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 23:23:57] 2025-11-22 22:23:09,700 | INFO     | ***************************************
[2025-11-22 23:23:57] 2025-11-22 22:23:09,700 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 23:23:57] 2025-11-22 22:23:09,700 | INFO     | ***************************************
[2025-11-22 23:23:57] 2025-11-22 22:23:09,700 | INFO     | 
[2025-11-22 23:23:57] 2025-11-22 22:23:09,701 | INFO     | pilot is running in a VM
[2025-11-22 23:23:57] 2025-11-22 22:23:09,701 | INFO     | architecture information:
[2025-11-22 23:23:57] 2025-11-22 22:23:09,707 | INFO     | executing command: cat /etc/os-release
[2025-11-22 23:23:57] 2025-11-22 22:23:09,939 | INFO     | cat /etc/os-release:
[2025-11-22 23:23:57] NAME="CentOS Linux"
[2025-11-22 23:23:57] VERSION="7 (Core)"
[2025-11-22 23:23:57] ID="centos"
[2025-11-22 23:23:57] ID_LIKE="rhel fedora"
[2025-11-22 23:23:57] VERSION_ID="7"
[2025-11-22 23:23:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 23:23:57] ANSI_COLOR="0;31"
[2025-11-22 23:23:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 23:23:57] HOME_URL="https://www.centos.org/"
[2025-11-22 23:23:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 23:23:57] 
[2025-11-22 23:23:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 23:23:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 23:23:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 23:23:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 23:23:57] 
[2025-11-22 23:23:57] 2025-11-22 22:23:09,939 | INFO     | ***************************************
[2025-11-22 23:23:57] 2025-11-22 22:23:10,442 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-11-22 23:23:57] 2025-11-22 22:23:10,633 | INFO     | sufficient remaining disk space (494951989248 B)
[2025-11-22 23:23:57] 2025-11-22 22:23:10,633 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 23:23:57] 2025-11-22 22:23:10,633 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 23:23:57] 2025-11-22 22:23:10,634 | INFO     | update_server=False
[2025-11-22 23:23:57] 2025-11-22 22:23:10,634 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 23:23:57] 2025-11-22 22:23:10,776 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 23:23:57] 2025-11-22 22:23:11,030 | INFO     | all job control threads have been joined
[2025-11-22 23:23:57] 2025-11-22 22:23:11,182 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:23:57] 2025-11-22 22:23:11,183 | INFO     | aborting loop
[2025-11-22 23:23:57] 2025-11-22 22:23:11,293 | INFO     | all payload control threads have been joined
[2025-11-22 23:23:57] 2025-11-22 22:23:11,446 | INFO     | all data control threads have been joined
[2025-11-22 23:23:57] 2025-11-22 22:23:11,640 | INFO     | [job] retrieve thread has finished
[2025-11-22 23:23:57] 2025-11-22 22:23:11,955 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:23:57] 2025-11-22 22:23:12,037 | INFO     | [job] control thread has finished
[2025-11-22 23:23:57] 2025-11-22 22:23:12,188 | INFO     | [job] job monitor thread has finished
[2025-11-22 23:23:57] 2025-11-22 22:23:12,221 | INFO     | [payload] validate_post thread has finished
[2025-11-22 23:23:57] 2025-11-22 22:23:12,299 | INFO     | [payload] control thread has finished
[2025-11-22 23:23:57] 2025-11-22 22:23:12,453 | INFO     | [data] control thread has finished
[2025-11-22 23:23:57] 2025-11-22 22:23:12,527 | INFO     | [data] copytool_in thread has finished
[2025-11-22 23:23:57] 2025-11-22 22:23:12,537 | INFO     | [job] validate thread has finished
[2025-11-22 23:23:57] 2025-11-22 22:23:12,561 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 23:23:57] 2025-11-22 22:23:12,690 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 23:23:57] 2025-11-22 22:23:12,770 | INFO     | [payload] failed_post thread has finished
[2025-11-22 23:23:57] 2025-11-22 22:23:12,783 | INFO     | [data] copytool_out thread has finished
[2025-11-22 23:23:57] 2025-11-22 22:23:12,883 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 23:23:57] 2025-11-22 22:23:12,961 | INFO     | [job] queue monitor thread has finished
[2025-11-22 23:23:57] 2025-11-22 22:23:13,066 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 23:23:57] 2025-11-22 22:23:13,886 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 23:23:57] 2025-11-22 22:23:17,895 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 23:23:57] 2025-11-22 22:23:39,393 | INFO     | PID=10438 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 23:23:57] 2025-11-22 22:23:39,394 | INFO     | .. there are 9 such processes running
[2025-11-22 23:23:57] 2025-11-22 22:23:39,394 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 23:23:57] 2025-11-22 22:23:39,394 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 23:23:57] 2025-11-22 22:23:39,394 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 23:23:57] 2025-11-22 22:23:45,307 | INFO     | [monitor] cgroup control has ended
[2025-11-22 23:23:57] 2025-11-22 22:23:47,218 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140212755154752)>', '<ExcThread(monitor, started 140212009162496)>']
[2025-11-22 23:23:57] 2025-11-22 22:23:47,441 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 23:23:57] 2025-11-22 22:23:47,442 | INFO     | [monitor] control thread has ended
[2025-11-22 23:23:57] 2025-11-22 22:23:52,244 | INFO     | all workflow threads have been joined
[2025-11-22 23:23:57] 2025-11-22 22:23:52,245 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 23:23:57] 2025-11-22 22:23:52,245 | INFO     | traces error code: 0
[2025-11-22 23:23:57] 2025-11-22 22:23:52,245 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 23:23:57] 2025-11-22 22:23:52,771 [wrapper] ==== pilot stdout END ====
[2025-11-22 23:23:57] 2025-11-22 22:23:52,888 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 23:23:57] 2025-11-22 22:23:52,989 [wrapper] pilotpid: 10438
[2025-11-22 23:23:57] 2025-11-22 22:23:53,095 [wrapper] Pilot exit status: 0
[2025-11-22 23:23:57] 2025-11-22 22:23:53,593 [wrapper] pandaids: 6891572634
[2025-11-22 23:23:57] 2025-11-22 22:23:54,619 [wrapper] cleanup supervisor_pilot  6164 10439
[2025-11-22 23:23:57] 2025-11-22 22:23:54,721 [wrapper] Test setup, not cleaning
[2025-11-22 23:23:57] 2025-11-22 22:23:54,840 [wrapper] apfmon messages muted
[2025-11-22 23:23:57] 2025-11-22 22:23:54,905 [wrapper] ==== wrapper stdout END ====
[2025-11-22 23:23:57] 2025-11-22 22:23:55,045 [wrapper] ==== wrapper stderr END ====
[2025-11-22 23:23:57]  *** Error codes and diagnostics ***
[2025-11-22 23:23:57]     "exeErrorCode": 0,
[2025-11-22 23:23:57]     "exeErrorDiag": "",
[2025-11-22 23:23:57]     "pilotErrorCode": 0,
[2025-11-22 23:23:57]     "pilotErrorDiag": "",
[2025-11-22 23:23:57]  *** Listing of results directory ***
[2025-11-22 23:23:57] total 1334228
[2025-11-22 23:23:57] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:24 pilot3.tar.gz
[2025-11-22 23:23:57] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:26 queuedata.json
[2025-11-22 23:23:57] -rwx------. 1 boinc boinc     36292 Nov 18 17:26 runpilot2-wrapper.sh
[2025-11-22 23:23:57] -rw-r--r--. 1 boinc boinc       100 Nov 21 21:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 23:23:57] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 21:53 run_atlas
[2025-11-22 23:23:57] -rw-r--r--. 1 boinc boinc       105 Nov 21 21:53 job.xml
[2025-11-22 23:23:57] -rw-r--r--. 1 boinc boinc      6391 Nov 21 21:53 init_data.xml
[2025-11-22 23:23:57] -rw-r--r--. 2 boinc boinc 411759433 Nov 21 21:53 EVNT.47493065._000342.pool.root.1
[2025-11-22 23:23:57] -rw-r--r--. 2 boinc boinc     15120 Nov 21 21:53 start_atlas.sh
[2025-11-22 23:23:57] drwxrwx--x. 2 boinc boinc        68 Nov 21 21:53 shared
[2025-11-22 23:23:57] -rw-r--r--. 2 boinc boinc    590101 Nov 21 21:53 input.tar.gz
[2025-11-22 23:23:57] -rw-r--r--. 1 boinc boinc         0 Nov 21 21:53 boinc_lockfile
[2025-11-22 23:23:57] -rw-r--r--. 1 boinc boinc      2773 Nov 21 21:53 pandaJob.out
[2025-11-22 23:23:57] -rw-------. 1 boinc boinc    989798 Nov 21 21:56 agis_schedconf.cvmfs.json
[2025-11-22 23:23:57] drwx------. 5 boinc boinc      4096 Nov 21 21:57 pilot3
[2025-11-22 23:23:57] -rw-r--r--. 1 boinc boinc       533 Nov 22 22:55 boinc_task_state.xml
[2025-11-22 23:23:57] -rw-------. 1 boinc boinc 921086000 Nov 22 23:19 HITS.47493068._003415.pool.root.1
[2025-11-22 23:23:57] -rw-------. 1 boinc boinc      1031 Nov 22 23:21 memory_monitor_summary.json
[2025-11-22 23:23:57] -rw-------. 1 boinc boinc   1526164 Nov 22 23:21 agis_ddmendpoints.agis.ALL.json
[2025-11-22 23:23:57] -rw-------. 1 boinc boinc   2552655 Nov 22 23:21 log.47493068._003415.job.log.tgz.1
[2025-11-22 23:23:57] -rw-------. 1 boinc boinc        95 Nov 22 23:22 pilot_heartbeat.json
[2025-11-22 23:23:57] -rw-------. 1 boinc boinc      8631 Nov 22 23:23 heartbeat.json
[2025-11-22 23:23:57] -rw-r--r--. 1 boinc boinc      8192 Nov 22 23:23 boinc_mmap_file
[2025-11-22 23:23:57] -rw-r--r--. 1 boinc boinc        29 Nov 22 23:23 wrapper_checkpoint.txt
[2025-11-22 23:23:57] -rw-------. 1 boinc boinc      4885 Nov 22 23:23 pilotlog.txt
[2025-11-22 23:23:57] -rw-------. 1 boinc boinc  12190905 Nov 22 23:23 log.47493068._003415.job.log.1
[2025-11-22 23:23:57] -rw-------. 1 boinc boinc       353 Nov 22 23:23 output.list
[2025-11-22 23:23:57] -rw-r--r--. 1 boinc boinc       620 Nov 22 23:23 runtime_log
[2025-11-22 23:23:57] -rw-------. 1 boinc boinc  14766080 Nov 22 23:23 result.tar.gz
[2025-11-22 23:23:57] -rw-r--r--. 1 boinc boinc      8717 Nov 22 23:23 runtime_log.err
[2025-11-22 23:23:57] -rw-------. 1 boinc boinc       662 Nov 22 23:23 qI0NDmlidf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOnFKDmDE3fRo.diag
[2025-11-22 23:23:57] -rw-r--r--. 1 boinc boinc     21507 Nov 22 23:23 stderr.txt
[2025-11-22 23:23:57] HITS file was successfully produced:
[2025-11-22 23:23:57] -rw-------. 1 boinc boinc 921086000 Nov 22 23:19 shared/HITS.pool.root.1
[2025-11-22 23:23:57]  *** Contents of shared directory: ***
[2025-11-22 23:23:57] total 1316628
[2025-11-22 23:23:57] -rw-r--r--. 2 boinc boinc 411759433 Nov 21 21:53 ATLAS.root_0
[2025-11-22 23:23:57] -rw-r--r--. 2 boinc boinc     15120 Nov 21 21:53 start_atlas.sh
[2025-11-22 23:23:57] -rw-r--r--. 2 boinc boinc    590101 Nov 21 21:53 input.tar.gz
[2025-11-22 23:23:57] -rw-------. 1 boinc boinc 921086000 Nov 22 23:19 HITS.pool.root.1
[2025-11-22 23:23:57] -rw-------. 1 boinc boinc  14766080 Nov 22 23:23 result.tar.gz
23:23:59 (6615): run_atlas exited; CPU time 338386.683596
23:23:59 (6615): called boinc_finish(0)

</stderr_txt>
]]>

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