Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:42:01 (18885): wrapper (7.7.26015): starting
03:42:01 (18885): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 03:42:01] Arguments: --nthreads 8
[2025-11-21 03:42:01] Threads: 8
[2025-11-21 03:42:01] Checking for CVMFS
[2025-11-21 03:42:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 03:42:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 03:42:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 03:42:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 03:42:04] 2.11.2.0 31392 277434 139004 153104 3 84 25117451 25165825 4250 130560 4 137376234 99.875 78006493 2990 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 03:42:04] CVMFS is ok
[2025-11-21 03:42:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 03:42:04] Checking for apptainer binary...
[2025-11-21 03:42:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 03:42:04] Running /usr/bin/apptainer --version
[2025-11-21 03:42:05] apptainer version 1.3.2-1.el7
[2025-11-21 03:42:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 03:42:11] cg-vwn267.simple-grid.lan
[2025-11-21 03:42:11] apptainer works
[2025-11-21 03:42:11] Set ATHENA_PROC_NUMBER=8
[2025-11-21 03:42:11] Set ATHENA_CORE_NUMBER=8
[2025-11-21 03:42:12] Starting ATLAS job with PandaID=6891561746
[2025-11-21 03:42:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 05:22:39]  *** The last 200 lines of the pilot log: ***
[2025-11-22 05:22:39] 2025-11-22 04:21:14,853 | INFO     | monitor loop #6176: job 0:6891561746 is in state 'finished'
[2025-11-22 05:22:39] 2025-11-22 04:21:14,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 05:22:39] 2025-11-22 04:21:15,802 | INFO     | time since job start (92126s) is within the limit (172800.0s)
[2025-11-22 05:22:39] 2025-11-22 04:21:17,358 | INFO     | monitor loop #6177: job 0:6891561746 is in state 'finished'
[2025-11-22 05:22:39] 2025-11-22 04:21:17,358 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 05:22:39] 2025-11-22 04:21:17,809 | INFO     | time since job start (92128s) is within the limit (172800.0s)
[2025-11-22 05:22:39] 2025-11-22 04:21:19,816 | INFO     | time since job start (92130s) is within the limit (172800.0s)
[2025-11-22 05:22:39] 2025-11-22 04:21:19,873 | INFO     | monitor loop #6178: job 0:6891561746 is in state 'finished'
[2025-11-22 05:22:39] 2025-11-22 04:21:19,873 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 05:22:39] 2025-11-22 04:21:21,829 | INFO     | time since job start (92132s) is within the limit (172800.0s)
[2025-11-22 05:22:39] 2025-11-22 04:21:22,380 | INFO     | monitor loop #6179: job 0:6891561746 is in state 'finished'
[2025-11-22 05:22:39] 2025-11-22 04:21:22,380 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 05:22:39] 2025-11-22 04:21:23,838 | INFO     | time since job start (92134s) is within the limit (172800.0s)
[2025-11-22 05:22:39] 2025-11-22 04:21:24,884 | INFO     | monitor loop #6180: job 0:6891561746 is in state 'finished'
[2025-11-22 05:22:39] 2025-11-22 04:21:24,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 05:22:39] 2025-11-22 04:21:25,845 | INFO     | time since job start (92136s) is within the limit (172800.0s)
[2025-11-22 05:22:39] 2025-11-22 04:21:26,794 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 05:22:39] 2025-11-22 04:21:26,795 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 05:22:39] 2025-11-22 04:21:26,797 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6891561746/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 05:22:39] 2025-11-22 04:21:26,797 | INFO     | extracted standard info from prmon json
[2025-11-22 05:22:39] 2025-11-22 04:21:26,797 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 05:22:39] 2025-11-22 04:21:26,798 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 05:22:39] 2025-11-22 04:21:26,839 | INFO     | fitting pss+swap vs Time
[2025-11-22 05:22:39] 2025-11-22 04:21:26,848 | INFO     | sum of square deviations: 1048623680285.7484
[2025-11-22 05:22:39] 2025-11-22 04:21:26,939 | INFO     | sum of deviations: 2709265086605.4404
[2025-11-22 05:22:39] 2025-11-22 04:21:26,940 | INFO     | mean x: 1763739417.3377748
[2025-11-22 05:22:39] 2025-11-22 04:21:26,940 | INFO     | mean y: 2847197.533644237
[2025-11-22 05:22:39] 2025-11-22 04:21:26,940 | INFO     | intersect: -4554018830.859818
[2025-11-22 05:22:39] 2025-11-22 04:21:26,942 | INFO     | chi2: 20.322873124308448
[2025-11-22 05:22:39] 2025-11-22 04:21:26,945 | INFO     | sum of square deviations: 1038179892236.7694
[2025-11-22 05:22:39] 2025-11-22 04:21:27,023 | INFO     | sum of deviations: 3209034473622.492
[2025-11-22 05:22:39] 2025-11-22 04:21:27,023 | INFO     | mean x: 1763739264.842246
[2025-11-22 05:22:39] 2025-11-22 04:21:27,023 | INFO     | mean y: 2854493.663101604
[2025-11-22 05:22:39] 2025-11-22 04:21:27,023 | INFO     | intersect: -5448898276.433462
[2025-11-22 05:22:39] 2025-11-22 04:21:27,025 | INFO     | chi2: 17.039255258228685
[2025-11-22 05:22:39] 2025-11-22 04:21:27,025 | INFO     | current chi2=17.039255258228685 (change=16.157252205408813 %)
[2025-11-22 05:22:39] 2025-11-22 04:21:27,025 | INFO     | right removable region: 1495
[2025-11-22 05:22:39] 2025-11-22 04:21:27,028 | INFO     | sum of square deviations: 1038178667356.7695
[2025-11-22 05:22:39] 2025-11-22 04:21:27,094 | INFO     | sum of deviations: 2105906267161.2454
[2025-11-22 05:22:39] 2025-11-22 04:21:27,094 | INFO     | mean x: 1763739569.842246
[2025-11-22 05:22:39] 2025-11-22 04:21:27,094 | INFO     | mean y: 2856005.581550802
[2025-11-22 05:22:39] 2025-11-22 04:21:27,094 | INFO     | intersect: -3574823184.4828105
[2025-11-22 05:22:39] 2025-11-22 04:21:27,096 | INFO     | chi2: 16.112887132387314
[2025-11-22 05:22:39] 2025-11-22 04:21:27,096 | INFO     | current chi2=16.112887132387314 (change=20.71550595316917 %)
[2025-11-22 05:22:39] 2025-11-22 04:21:27,096 | INFO     | left removable region: 10
[2025-11-22 05:22:39] 2025-11-22 04:21:27,098 | INFO     | sum of square deviations: 1015446075255.6221
[2025-11-22 05:22:39] 2025-11-22 04:21:27,177 | INFO     | sum of deviations: 2433686667967.5576
[2025-11-22 05:22:39] 2025-11-22 04:21:27,178 | INFO     | mean x: 1763739539.349495
[2025-11-22 05:22:39] 2025-11-22 04:21:27,178 | INFO     | mean y: 2868957.087542088
[2025-11-22 05:22:39] 2025-11-22 04:21:27,178 | INFO     | intersect: -4224228381.98245
[2025-11-22 05:22:39] 2025-11-22 04:21:27,180 | INFO     | chi2: 11.110978627135493
[2025-11-22 05:22:39] 2025-11-22 04:21:27,180 | INFO     | current memory leak: 2.40 B/s (using 1485 data points, chi2=11.11)
[2025-11-22 05:22:39] 2025-11-22 04:21:27,182 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-22 05:22:39] 2025-11-22 04:21:27,183 | INFO     | ..............................
[2025-11-22 05:22:39] 2025-11-22 04:21:27,183 | INFO     | . Timing measurements:
[2025-11-22 05:22:39] 2025-11-22 04:21:27,183 | INFO     | . get job = 0 s
[2025-11-22 05:22:39] 2025-11-22 04:21:27,183 | INFO     | . initial setup = 9 s
[2025-11-22 05:22:39] 2025-11-22 04:21:27,183 | INFO     | . payload setup = 151 s
[2025-11-22 05:22:39] 2025-11-22 04:21:27,183 | INFO     | . stage-in = 0 s
[2025-11-22 05:22:39] 2025-11-22 04:21:27,183 | INFO     | . payload execution = 91681 s
[2025-11-22 05:22:39] 2025-11-22 04:21:27,183 | INFO     | . stage-out = 5 s
[2025-11-22 05:22:39] 2025-11-22 04:21:27,183 | INFO     | . log creation = 2 s
[2025-11-22 05:22:39] 2025-11-22 04:21:27,183 | INFO     | ..............................
[2025-11-22 05:22:39] 2025-11-22 04:21:27,324 | INFO     | 
[2025-11-22 05:22:39] 2025-11-22 04:21:27,324 | INFO     | job summary report
[2025-11-22 05:22:39] 2025-11-22 04:21:27,324 | INFO     | --------------------------------------------------
[2025-11-22 05:22:39] 2025-11-22 04:21:27,324 | INFO     | PanDA job id: 6891561746
[2025-11-22 05:22:39] 2025-11-22 04:21:27,325 | INFO     | task id: 47493068
[2025-11-22 05:22:39] 2025-11-22 04:21:27,325 | INFO     | errors: (none)
[2025-11-22 05:22:39] 2025-11-22 04:21:27,325 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 05:22:39] 2025-11-22 04:21:27,325 | INFO     | pilot state: finished 
[2025-11-22 05:22:39] 2025-11-22 04:21:27,325 | INFO     | transexitcode: 0
[2025-11-22 05:22:39] 2025-11-22 04:21:27,325 | INFO     | exeerrorcode: 0
[2025-11-22 05:22:39] 2025-11-22 04:21:27,325 | INFO     | exeerrordiag: 
[2025-11-22 05:22:39] 2025-11-22 04:21:27,325 | INFO     | exitcode: 0
[2025-11-22 05:22:39] 2025-11-22 04:21:27,325 | INFO     | exitmsg: OK
[2025-11-22 05:22:39] 2025-11-22 04:21:27,326 | INFO     | cpuconsumptiontime: 341569 s
[2025-11-22 05:22:39] 2025-11-22 04:21:27,326 | INFO     | nevents: 1000
[2025-11-22 05:22:39] 2025-11-22 04:21:27,326 | INFO     | neventsw: 0
[2025-11-22 05:22:39] 2025-11-22 04:21:27,326 | INFO     | pid: 29263
[2025-11-22 05:22:39] 2025-11-22 04:21:27,326 | INFO     | pgrp: 29263
[2025-11-22 05:22:39] 2025-11-22 04:21:27,326 | INFO     | corecount: 8
[2025-11-22 05:22:39] 2025-11-22 04:21:27,326 | INFO     | event service: False
[2025-11-22 05:22:39] 2025-11-22 04:21:27,326 | INFO     | sizes: {0: 2298565, 1: 2298820, 12: 2298820, 23: 2298848, 34: 2298876, 44: 2298904, 55: 2299060, 66: 2299088, 76: 2299116, 87: 2299172, 89: 2299462, 98: 2299770, 9
[2025-11-22 05:22:39] 2025-11-22 04:21:27,326 | INFO     | --------------------------------------------------
[2025-11-22 05:22:39] 2025-11-22 04:21:27,326 | INFO     | 
[2025-11-22 05:22:39] 2025-11-22 04:21:27,327 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-22 05:22:39] 2025-11-22 04:21:27,679 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,679 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,679 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,679 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,679 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,679 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,680 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,680 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,680 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,680 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,680 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,680 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,680 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,680 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,680 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,680 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,680 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,681 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 05:22:39] 2025-11-22 04:21:27,681 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,681 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 05:22:39] 2025-11-22 04:21:27,681 | INFO     | job 6891561746 has completed (purged errors)
[2025-11-22 05:22:39] 2025-11-22 04:21:27,681 | INFO     | overall cleanup function is called
[2025-11-22 05:22:39] 2025-11-22 04:21:28,699 | INFO     | --- collectZombieJob: --- 10, [29263]
[2025-11-22 05:22:39] 2025-11-22 04:21:28,699 | INFO     | zombie collector waiting for pid 29263
[2025-11-22 05:22:39] 2025-11-22 04:21:28,699 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 05:22:39] 2025-11-22 04:21:28,699 | INFO     | collected zombie processes
[2025-11-22 05:22:39] 2025-11-22 04:21:28,700 | INFO     | will attempt to kill all subprocesses of pid=29263
[2025-11-22 05:22:39] 2025-11-22 04:21:28,814 | INFO     | process IDs to be killed: [29263] (in reverse order)
[2025-11-22 05:22:39] 2025-11-22 04:21:29,287 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 05:22:39] 2025-11-22 04:21:29,287 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 05:22:39] 2025-11-22 04:21:29,291 | INFO     | did not find any defunct processes belonging to 29263
[2025-11-22 05:22:39] 2025-11-22 04:21:29,294 | INFO     | did not find any defunct processes belonging to 29263
[2025-11-22 05:22:39] 2025-11-22 04:21:29,348 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 05:22:39] 2025-11-22 04:21:29,349 | INFO     | ready for new job
[2025-11-22 05:22:39] 2025-11-22 04:21:29,349 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 05:22:39] 2025-11-22 04:21:29,356 | INFO     | ***************************************
[2025-11-22 05:22:39] 2025-11-22 04:21:29,356 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 05:22:39] 2025-11-22 04:21:29,356 | INFO     | ***************************************
[2025-11-22 05:22:39] 2025-11-22 04:21:29,356 | INFO     | 
[2025-11-22 05:22:39] 2025-11-22 04:21:29,357 | INFO     | pilot is running in a VM
[2025-11-22 05:22:39] 2025-11-22 04:21:29,357 | INFO     | architecture information:
[2025-11-22 05:22:39] 2025-11-22 04:21:29,365 | INFO     | executing command: cat /etc/os-release
[2025-11-22 05:22:39] 2025-11-22 04:21:29,651 | INFO     | cat /etc/os-release:
[2025-11-22 05:22:39] NAME="CentOS Linux"
[2025-11-22 05:22:39] VERSION="7 (Core)"
[2025-11-22 05:22:39] ID="centos"
[2025-11-22 05:22:39] ID_LIKE="rhel fedora"
[2025-11-22 05:22:39] VERSION_ID="7"
[2025-11-22 05:22:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 05:22:39] ANSI_COLOR="0;31"
[2025-11-22 05:22:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 05:22:39] HOME_URL="https://www.centos.org/"
[2025-11-22 05:22:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 05:22:39] 
[2025-11-22 05:22:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 05:22:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 05:22:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 05:22:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 05:22:39] 
[2025-11-22 05:22:39] 2025-11-22 04:21:29,652 | INFO     | ***************************************
[2025-11-22 05:22:39] 2025-11-22 04:21:30,155 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-22 05:22:39] 2025-11-22 04:21:30,374 | INFO     | sufficient remaining disk space (494957232128 B)
[2025-11-22 05:22:39] 2025-11-22 04:21:30,374 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 05:22:39] 2025-11-22 04:21:30,375 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 05:22:39] 2025-11-22 04:21:30,375 | INFO     | update_server=False
[2025-11-22 05:22:39] 2025-11-22 04:21:30,375 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 05:22:39] 2025-11-22 04:21:30,485 | INFO     | all job control threads have been joined
[2025-11-22 05:22:39] 2025-11-22 04:21:30,497 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 05:22:39] 2025-11-22 04:21:30,909 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:22:39] 2025-11-22 04:21:30,909 | INFO     | aborting loop
[2025-11-22 05:22:39] 2025-11-22 04:21:30,964 | INFO     | all data control threads have been joined
[2025-11-22 05:22:39] 2025-11-22 04:21:31,069 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 05:22:39] 2025-11-22 04:21:31,381 | INFO     | [job] retrieve thread has finished
[2025-11-22 05:22:39] 2025-11-22 04:21:31,491 | INFO     | [job] control thread has finished
[2025-11-22 05:22:39] 2025-11-22 04:21:31,532 | INFO     | [job] validate thread has finished
[2025-11-22 05:22:39] 2025-11-22 04:21:31,550 | INFO     | all payload control threads have been joined
[2025-11-22 05:22:39] 2025-11-22 04:21:31,676 | INFO     | [payload] failed_post thread has finished
[2025-11-22 05:22:39] 2025-11-22 04:21:31,679 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 05:22:39] 2025-11-22 04:21:31,842 | INFO     | [payload] validate_post thread has finished
[2025-11-22 05:22:39] 2025-11-22 04:21:31,915 | INFO     | [job] job monitor thread has finished
[2025-11-22 05:22:39] 2025-11-22 04:21:31,970 | INFO     | [data] control thread has finished
[2025-11-22 05:22:39] 2025-11-22 04:21:31,993 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 05:22:39] 2025-11-22 04:21:32,339 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:22:39] 2025-11-22 04:21:32,419 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 05:22:39] 2025-11-22 04:21:32,504 | INFO     | [data] copytool_out thread has finished
[2025-11-22 05:22:39] 2025-11-22 04:21:32,555 | INFO     | [payload] control thread has finished
[2025-11-22 05:22:39] 2025-11-22 04:21:32,626 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 05:22:39] 2025-11-22 04:21:32,720 | INFO     | [data] copytool_in thread has finished
[2025-11-22 05:22:39] 2025-11-22 04:21:33,344 | INFO     | [job] queue monitor thread has finished
[2025-11-22 05:22:39] 2025-11-22 04:21:35,078 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 05:22:39] 2025-11-22 04:21:59,054 | INFO     | PID=22681 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 05:22:39] 2025-11-22 04:21:59,055 | INFO     | .. there are 9 such processes running
[2025-11-22 05:22:39] 2025-11-22 04:21:59,056 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 05:22:39] 2025-11-22 04:21:59,056 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 05:22:39] 2025-11-22 04:21:59,056 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 05:22:39] 2025-11-22 04:22:29,522 | INFO     | [monitor] cgroup control has ended
[2025-11-22 05:22:39] 2025-11-22 04:22:29,958 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140094628218688)>', '<ExcThread(monitor, started 140093973063424)>']
[2025-11-22 05:22:39] 2025-11-22 04:22:30,239 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 05:22:39] 2025-11-22 04:22:30,239 | INFO     | [monitor] control thread has ended
[2025-11-22 05:22:39] 2025-11-22 04:22:34,984 | INFO     | all workflow threads have been joined
[2025-11-22 05:22:39] 2025-11-22 04:22:34,984 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 05:22:39] 2025-11-22 04:22:34,985 | INFO     | traces error code: 0
[2025-11-22 05:22:39] 2025-11-22 04:22:34,985 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 05:22:39] 2025-11-22 04:22:35,514 [wrapper] ==== pilot stdout END ====
[2025-11-22 05:22:39] 2025-11-22 04:22:35,605 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 05:22:39] 2025-11-22 04:22:35,703 [wrapper] pilotpid: 22681
[2025-11-22 05:22:39] 2025-11-22 04:22:35,805 [wrapper] Pilot exit status: 0
[2025-11-22 05:22:39] 2025-11-22 04:22:36,041 [wrapper] pandaids: 6891561746
[2025-11-22 05:22:39] 2025-11-22 04:22:36,937 [wrapper] cleanup supervisor_pilot 21954 22682
[2025-11-22 05:22:39] 2025-11-22 04:22:37,033 [wrapper] Test setup, not cleaning
[2025-11-22 05:22:39] 2025-11-22 04:22:37,143 [wrapper] apfmon messages muted
[2025-11-22 05:22:39] 2025-11-22 04:22:37,182 [wrapper] ==== wrapper stdout END ====
[2025-11-22 05:22:39] 2025-11-22 04:22:37,258 [wrapper] ==== wrapper stderr END ====
[2025-11-22 05:22:39]  *** Error codes and diagnostics ***
[2025-11-22 05:22:39]     "exeErrorCode": 0,
[2025-11-22 05:22:39]     "exeErrorDiag": "",
[2025-11-22 05:22:39]     "pilotErrorCode": 0,
[2025-11-22 05:22:39]     "pilotErrorDiag": "",
[2025-11-22 05:22:39]  *** Listing of results directory ***
[2025-11-22 05:22:39] total 1333468
[2025-11-22 05:22:39] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-22 05:22:39] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:27 queuedata.json
[2025-11-22 05:22:39] -rwx------. 1 boinc boinc     36292 Nov 18 16:27 runpilot2-wrapper.sh
[2025-11-22 05:22:39] -rw-r--r--. 1 boinc boinc       100 Nov 21 03:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 05:22:39] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 03:42 run_atlas
[2025-11-22 05:22:39] -rw-r--r--. 1 boinc boinc       105 Nov 21 03:42 job.xml
[2025-11-22 05:22:39] -rw-r--r--. 2 boinc boinc 411135365 Nov 21 03:42 EVNT.47493065._000096.pool.root.1
[2025-11-22 05:22:39] -rw-r--r--. 1 boinc boinc      6390 Nov 21 03:42 init_data.xml
[2025-11-22 05:22:39] -rw-r--r--. 2 boinc boinc     15120 Nov 21 03:42 start_atlas.sh
[2025-11-22 05:22:39] drwxrwx--x. 2 boinc boinc        68 Nov 21 03:42 shared
[2025-11-22 05:22:39] -rw-r--r--. 2 boinc boinc    590104 Nov 21 03:42 input.tar.gz
[2025-11-22 05:22:39] -rw-r--r--. 1 boinc boinc         0 Nov 21 03:42 boinc_lockfile
[2025-11-22 05:22:39] -rw-r--r--. 1 boinc boinc      2771 Nov 21 03:42 pandaJob.out
[2025-11-22 05:22:39] -rw-------. 1 boinc boinc    989817 Nov 21 03:45 agis_schedconf.cvmfs.json
[2025-11-22 05:22:39] drwx------. 5 boinc boinc      4096 Nov 21 03:45 pilot3
[2025-11-22 05:22:39] -rw-r--r--. 1 boinc boinc       533 Nov 22 04:52 boinc_task_state.xml
[2025-11-22 05:22:39] -rw-------. 1 boinc boinc 920833112 Nov 22 05:18 HITS.47493068._000958.pool.root.1
[2025-11-22 05:22:39] -rw-------. 1 boinc boinc      1031 Nov 22 05:19 memory_monitor_summary.json
[2025-11-22 05:22:39] -rw-------. 1 boinc boinc   1526164 Nov 22 05:19 agis_ddmendpoints.agis.ALL.json
[2025-11-22 05:22:39] -rw-------. 1 boinc boinc   2569793 Nov 22 05:19 log.47493068._000958.job.log.tgz.1
[2025-11-22 05:22:39] -rw-------. 1 boinc boinc      8626 Nov 22 05:21 heartbeat.json
[2025-11-22 05:22:39] -rw-------. 1 boinc boinc        95 Nov 22 05:21 pilot_heartbeat.json
[2025-11-22 05:22:39] -rw-------. 1 boinc boinc      4884 Nov 22 05:22 pilotlog.txt
[2025-11-22 05:22:39] -rw-r--r--. 1 boinc boinc        29 Nov 22 05:22 wrapper_checkpoint.txt
[2025-11-22 05:22:39] -rw-r--r--. 1 boinc boinc      8192 Nov 22 05:22 boinc_mmap_file
[2025-11-22 05:22:39] -rw-------. 1 boinc boinc  12223533 Nov 22 05:22 log.47493068._000958.job.log.1
[2025-11-22 05:22:39] -rw-------. 1 boinc boinc       353 Nov 22 05:22 output.list
[2025-11-22 05:22:39] -rw-r--r--. 1 boinc boinc       620 Nov 22 05:22 runtime_log
[2025-11-22 05:22:39] -rw-------. 1 boinc boinc  14817280 Nov 22 05:22 result.tar.gz
[2025-11-22 05:22:39] -rw-r--r--. 1 boinc boinc      8703 Nov 22 05:22 runtime_log.err
[2025-11-22 05:22:39] -rw-------. 1 boinc boinc       662 Nov 22 05:22 DAnMDmXncf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8PFKDmfzIW7m.diag
[2025-11-22 05:22:39] -rw-r--r--. 1 boinc boinc     21444 Nov 22 05:22 stderr.txt
[2025-11-22 05:22:39] HITS file was successfully produced:
[2025-11-22 05:22:39] -rw-------. 1 boinc boinc 920833112 Nov 22 05:18 shared/HITS.pool.root.1
[2025-11-22 05:22:39]  *** Contents of shared directory: ***
[2025-11-22 05:22:39] total 1315820
[2025-11-22 05:22:39] -rw-r--r--. 2 boinc boinc 411135365 Nov 21 03:42 ATLAS.root_0
[2025-11-22 05:22:39] -rw-r--r--. 2 boinc boinc     15120 Nov 21 03:42 start_atlas.sh
[2025-11-22 05:22:39] -rw-r--r--. 2 boinc boinc    590104 Nov 21 03:42 input.tar.gz
[2025-11-22 05:22:39] -rw-------. 1 boinc boinc 920833112 Nov 22 05:18 HITS.pool.root.1
[2025-11-22 05:22:39] -rw-------. 1 boinc boinc  14817280 Nov 22 05:22 result.tar.gz
05:22:41 (18885): run_atlas exited; CPU time 342089.890395
05:22:41 (18885): called boinc_finish(0)

</stderr_txt>
]]>

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