Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
08:27:05 (807692): wrapper (7.7.26015): starting
08:27:05 (807692): wrapper: running run_atlas (--nthreads 8)
[2025-11-06 08:27:05] Arguments: --nthreads 8
[2025-11-06 08:27:05] Threads: 8
[2025-11-06 08:27:05] Checking for CVMFS
[2025-11-06 08:27:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-06 08:27:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-06 08:27:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-06 08:27:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-06 08:27:07] 2.13.3.0 744127 173 42328 152546 2 57 2610593 4096001 1838 130560 0 195570 97.639 330318 601 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-06 08:27:07] CVMFS is ok
[2025-11-06 08:27:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-06 08:27:07] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-06 08:27:07] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-06 08:27:07] Further information can be found at the LHC@home message board.
[2025-11-06 08:27:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-06 08:27:07] Checking for apptainer binary...
[2025-11-06 08:27:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-06 08:27:07] Running /usr/bin/apptainer --version
[2025-11-06 08:27:07] apptainer version 1.4.4
[2025-11-06 08:27:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-06 08:27:07] garage
[2025-11-06 08:27:07] apptainer works
[2025-11-06 08:27:07] Set ATHENA_PROC_NUMBER=8
[2025-11-06 08:27:07] Set ATHENA_CORE_NUMBER=8
[2025-11-06 08:27:07] Starting ATLAS job with PandaID=6874037361
[2025-11-06 08:27:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-06 21:13:41]  *** The last 200 lines of the pilot log: ***
[2025-11-06 21:13:41] 2025-11-07 04:12:55,258 | INFO     | monitor loop #3422: job 0:6874037361 is in state 'finished'
[2025-11-06 21:13:41] 2025-11-07 04:12:55,258 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-06 21:13:41] 2025-11-07 04:12:56,298 | INFO     | time since job start (45936s) is within the limit (172800.0s)
[2025-11-06 21:13:41] 2025-11-07 04:12:57,138 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-06 21:13:41] 2025-11-07 04:12:57,141 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4264.230437499999
[2025-11-06 21:13:41] 2025-11-07 04:12:57,144 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6874037361/memory_monitor_summary.json (trf name=prmon)
[2025-11-06 21:13:41] 2025-11-07 04:12:57,144 | INFO     | extracted standard info from prmon json
[2025-11-06 21:13:41] 2025-11-07 04:12:57,144 | INFO     | extracted standard memory fields from prmon json
[2025-11-06 21:13:41] 2025-11-07 04:12:57,144 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-06 21:13:41] 2025-11-07 04:12:57,150 | INFO     | fitting pss+swap vs Time
[2025-11-06 21:13:41] 2025-11-07 04:12:57,150 | INFO     | sum of square deviations: 132392257192.0
[2025-11-06 21:13:41] 2025-11-07 04:12:57,156 | INFO     | sum of deviations: 1019917257256.9998
[2025-11-06 21:13:41] 2025-11-07 04:12:57,156 | INFO     | mean x: 1762465798.0
[2025-11-06 21:13:41] 2025-11-07 04:12:57,156 | INFO     | mean y: 3537274.2855245685
[2025-11-06 21:13:41] 2025-11-07 04:12:57,156 | INFO     | intersect: -13574064020.770046
[2025-11-06 21:13:41] 2025-11-07 04:12:57,156 | INFO     | chi2: 4.239861069543184
[2025-11-06 21:13:41] 2025-11-07 04:12:57,157 | INFO     | sum of square deviations: 129772431327.0
[2025-11-06 21:13:41] 2025-11-07 04:12:57,163 | INFO     | sum of deviations: 1247931139268.9993
[2025-11-06 21:13:41] 2025-11-07 04:12:57,163 | INFO     | mean x: 1762465645.5
[2025-11-06 21:13:41] 2025-11-07 04:12:57,163 | INFO     | mean y: 3550528.4572192514
[2025-11-06 21:13:41] 2025-11-07 04:12:57,163 | INFO     | intersect: -16944854756.245806
[2025-11-06 21:13:41] 2025-11-07 04:12:57,163 | INFO     | chi2: 2.2668293479588293
[2025-11-06 21:13:41] 2025-11-07 04:12:57,163 | INFO     | current chi2=2.2668293479588293 (change=46.53529182259115 %)
[2025-11-06 21:13:41] 2025-11-07 04:12:57,163 | INFO     | sum of square deviations: 127187396812.0
[2025-11-06 21:13:41] 2025-11-07 04:12:57,169 | INFO     | sum of deviations: 1277549659318.0
[2025-11-06 21:13:41] 2025-11-07 04:12:57,169 | INFO     | mean x: 1762465493.0
[2025-11-06 21:13:41] 2025-11-07 04:12:57,169 | INFO     | mean y: 3552269.31359354
[2025-11-06 21:13:41] 2025-11-07 04:12:57,169 | INFO     | intersect: -17699752040.547405
[2025-11-06 21:13:41] 2025-11-07 04:12:57,170 | INFO     | chi2: 2.1648131573250313
[2025-11-06 21:13:41] 2025-11-07 04:12:57,170 | INFO     | current chi2=2.1648131573250313 (change=4.500391294371525 %)
[2025-11-06 21:13:41] 2025-11-07 04:12:57,170 | INFO     | right removable region: 742
[2025-11-06 21:13:41] 2025-11-07 04:12:57,170 | INFO     | sum of square deviations: 129772431327.0
[2025-11-06 21:13:41] 2025-11-07 04:12:57,176 | INFO     | sum of deviations: 793995884170.0002
[2025-11-06 21:13:41] 2025-11-07 04:12:57,176 | INFO     | mean x: 1762465950.5
[2025-11-06 21:13:41] 2025-11-07 04:12:57,176 | INFO     | mean y: 3550398.355614973
[2025-11-06 21:13:41] 2025-11-07 04:12:57,176 | INFO     | intersect: -10779870212.456467
[2025-11-06 21:13:41] 2025-11-07 04:12:57,177 | INFO     | chi2: 2.284939730706804
[2025-11-06 21:13:41] 2025-11-07 04:12:57,177 | INFO     | current chi2=2.284939730706804 (change=46.10814615788836 %)
[2025-11-06 21:13:41] 2025-11-07 04:12:57,177 | INFO     | sum of square deviations: 127187396812.0
[2025-11-06 21:13:41] 2025-11-07 04:12:57,183 | INFO     | sum of deviations: 729511289060.0
[2025-11-06 21:13:41] 2025-11-07 04:12:57,183 | INFO     | mean x: 1762466103.0
[2025-11-06 21:13:41] 2025-11-07 04:12:57,183 | INFO     | mean y: 3554200.3405114403
[2025-11-06 21:13:41] 2025-11-07 04:12:57,183 | INFO     | intersect: -10105457784.743034
[2025-11-06 21:13:41] 2025-11-07 04:12:57,183 | INFO     | chi2: 2.208728367563438
[2025-11-06 21:13:41] 2025-11-07 04:12:57,183 | INFO     | current chi2=2.208728367563438 (change=3.3353773895730403 %)
[2025-11-06 21:13:41] 2025-11-07 04:12:57,183 | INFO     | left removable region: 20
[2025-11-06 21:13:41] 2025-11-07 04:12:57,184 | INFO     | sum of square deviations: 116704924920.5
[2025-11-06 21:13:41] 2025-11-07 04:12:57,189 | INFO     | sum of deviations: 900375114275.0002
[2025-11-06 21:13:41] 2025-11-07 04:12:57,189 | INFO     | mean x: 1762466072.5
[2025-11-06 21:13:41] 2025-11-07 04:12:57,189 | INFO     | mean y: 3574691.7950138506
[2025-11-06 21:13:41] 2025-11-07 04:12:57,189 | INFO     | intersect: -13593799990.6701
[2025-11-06 21:13:41] 2025-11-07 04:12:57,190 | INFO     | chi2: 0.08939879902269098
[2025-11-06 21:13:41] 2025-11-07 04:12:57,190 | INFO     | current memory leak: 7.71 B/s (using 722 data points, chi2=0.09)
[2025-11-06 21:13:41] 2025-11-07 04:12:57,190 | INFO     | could have reported an average CPU frequency of 4520 MHz (29 samples)
[2025-11-06 21:13:41] 2025-11-07 04:12:57,190 | INFO     | ..............................
[2025-11-06 21:13:41] 2025-11-07 04:12:57,190 | INFO     | . Timing measurements:
[2025-11-06 21:13:41] 2025-11-07 04:12:57,190 | INFO     | . get job = 0 s
[2025-11-06 21:13:41] 2025-11-07 04:12:57,190 | INFO     | . initial setup = 3 s
[2025-11-06 21:13:41] 2025-11-07 04:12:57,190 | INFO     | . payload setup = 5 s
[2025-11-06 21:13:41] 2025-11-07 04:12:57,190 | INFO     | . stage-in = 0 s
[2025-11-06 21:13:41] 2025-11-07 04:12:57,190 | INFO     | . payload execution = 45899 s
[2025-11-06 21:13:41] 2025-11-07 04:12:57,190 | INFO     | . stage-out = 7 s
[2025-11-06 21:13:41] 2025-11-07 04:12:57,191 | INFO     | . log creation = 0 s
[2025-11-06 21:13:41] 2025-11-07 04:12:57,191 | INFO     | ..............................
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | 
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | job summary report
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | --------------------------------------------------
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | PanDA job id: 6874037361
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | task id: 47264539
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | errors: (none)
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | pilot state: finished 
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | transexitcode: 0
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | exeerrorcode: 0
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | exeerrordiag: 
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | exitcode: 0
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | exitmsg: OK
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | cpuconsumptiontime: 361244 s
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | nevents: 1000
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | neventsw: 0
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | pid: 830183
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | pgrp: 830183
[2025-11-06 21:13:41] 2025-11-07 04:12:57,237 | INFO     | corecount: 8
[2025-11-06 21:13:41] 2025-11-07 04:12:57,238 | INFO     | event service: False
[2025-11-06 21:13:41] 2025-11-07 04:12:57,238 | INFO     | sizes: {0: 2349553, 1: 2349553, 3: 2349843, 11: 2349871, 45908: 2415225, 45917: 2424237, 45919: 2424421, 45924: 2424667}
[2025-11-06 21:13:41] 2025-11-07 04:12:57,238 | INFO     | --------------------------------------------------
[2025-11-06 21:13:41] 2025-11-07 04:12:57,238 | INFO     | 
[2025-11-06 21:13:41] 2025-11-07 04:12:57,238 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,249 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-06 21:13:41] 2025-11-07 04:12:57,250 | INFO     | job 6874037361 has completed (purged errors)
[2025-11-06 21:13:41] 2025-11-07 04:12:57,250 | INFO     | overall cleanup function is called
[2025-11-06 21:13:41] 2025-11-07 04:12:58,261 | INFO     | --- collectZombieJob: --- 10, [830183]
[2025-11-06 21:13:41] 2025-11-07 04:12:58,261 | INFO     | zombie collector waiting for pid 830183
[2025-11-06 21:13:41] 2025-11-07 04:12:58,261 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-06 21:13:41] 2025-11-07 04:12:58,261 | INFO     | collected zombie processes
[2025-11-06 21:13:41] 2025-11-07 04:12:58,261 | INFO     | will attempt to kill all subprocesses of pid=830183
[2025-11-06 21:13:41] 2025-11-07 04:12:58,340 | INFO     | process IDs to be killed: [830183] (in reverse order)
[2025-11-06 21:13:41] 2025-11-07 04:12:58,375 | WARNING  | found no corresponding commands to process id(s)
[2025-11-06 21:13:41] 2025-11-07 04:12:58,375 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-06 21:13:41] 2025-11-07 04:12:58,378 | INFO     | did not find any defunct processes belonging to 830183
[2025-11-06 21:13:41] 2025-11-07 04:12:58,380 | INFO     | did not find any defunct processes belonging to 830183
[2025-11-06 21:13:41] 2025-11-07 04:12:58,381 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-06 21:13:41] 2025-11-07 04:12:58,381 | INFO     | ready for new job
[2025-11-06 21:13:41] 2025-11-07 04:12:58,381 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-06 21:13:41] 2025-11-07 04:12:58,383 | INFO     | ***************************************
[2025-11-06 21:13:41] 2025-11-07 04:12:58,383 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-06 21:13:41] 2025-11-07 04:12:58,383 | INFO     | ***************************************
[2025-11-06 21:13:41] 2025-11-07 04:12:58,383 | INFO     | 
[2025-11-06 21:13:41] 2025-11-07 04:12:58,384 | INFO     | architecture information:
[2025-11-06 21:13:41] 2025-11-07 04:12:58,385 | INFO     | executing command: cat /etc/os-release
[2025-11-06 21:13:41] 2025-11-07 04:12:58,393 | INFO     | cat /etc/os-release:
[2025-11-06 21:13:41] NAME="CentOS Linux"
[2025-11-06 21:13:41] VERSION="7 (Core)"
[2025-11-06 21:13:41] ID="centos"
[2025-11-06 21:13:41] ID_LIKE="rhel fedora"
[2025-11-06 21:13:41] VERSION_ID="7"
[2025-11-06 21:13:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-06 21:13:41] ANSI_COLOR="0;31"
[2025-11-06 21:13:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-06 21:13:41] HOME_URL="https://www.centos.org/"
[2025-11-06 21:13:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-06 21:13:41] 
[2025-11-06 21:13:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-06 21:13:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-06 21:13:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-06 21:13:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-06 21:13:41] 
[2025-11-06 21:13:41] 2025-11-07 04:12:58,393 | INFO     | ***************************************
[2025-11-06 21:13:41] 2025-11-07 04:12:58,896 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-11-06 21:13:41] 2025-11-07 04:12:58,906 | INFO     | sufficient remaining disk space (672412991488 B)
[2025-11-06 21:13:41] 2025-11-07 04:12:58,906 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-06 21:13:41] 2025-11-07 04:12:58,906 | INFO     | current server update state: UPDATING_FINAL
[2025-11-06 21:13:41] 2025-11-07 04:12:58,906 | INFO     | update_server=False
[2025-11-06 21:13:41] 2025-11-07 04:12:58,906 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-06 21:13:41] 2025-11-07 04:12:58,907 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-06 21:13:41] 2025-11-07 04:12:58,907 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-06 21:13:41] 2025-11-07 04:12:58,907 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-06 21:13:41] 2025-11-07 04:12:58,907 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-06 21:13:41] 2025-11-07 04:12:58,907 | INFO     | aborting loop
[2025-11-06 21:13:41] 2025-11-07 04:12:59,157 | INFO     | all data control threads have been joined
[2025-11-06 21:13:41] 2025-11-07 04:12:59,322 | INFO     | all job control threads have been joined
[2025-11-06 21:13:41] 2025-11-07 04:12:59,909 | INFO     | [job] queue monitor thread has finished
[2025-11-06 21:13:41] 2025-11-07 04:12:59,912 | INFO     | [job] job monitor thread has finished
[2025-11-06 21:13:41] 2025-11-07 04:12:59,912 | INFO     | [job] retrieve thread has finished
[2025-11-06 21:13:41] 2025-11-07 04:13:00,162 | INFO     | [data] control thread has finished
[2025-11-06 21:13:41] 2025-11-07 04:13:00,316 | INFO     | all payload control threads have been joined
[2025-11-06 21:13:41] 2025-11-07 04:13:00,328 | INFO     | [job] control thread has finished
[2025-11-06 21:13:41] 2025-11-07 04:13:00,573 | INFO     | [data] copytool_in thread has finished
[2025-11-06 21:13:41] 2025-11-07 04:13:00,725 | INFO     | [payload] validate_post thread has finished
[2025-11-06 21:13:41] 2025-11-07 04:13:00,892 | INFO     | [payload] failed_post thread has finished
[2025-11-06 21:13:41] 2025-11-07 04:13:00,912 | INFO     | [data] copytool_out thread has finished
[2025-11-06 21:13:41] 2025-11-07 04:13:01,077 | INFO     | [payload] execute_payloads thread has finished
[2025-11-06 21:13:41] 2025-11-07 04:13:01,173 | INFO     | [payload] validate_pre thread has finished
[2025-11-06 21:13:41] 2025-11-07 04:13:01,184 | INFO     | [job] create_data_payload thread has finished
[2025-11-06 21:13:41] 2025-11-07 04:13:01,320 | INFO     | [payload] control thread has finished
[2025-11-06 21:13:41] 2025-11-07 04:13:01,331 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-06 21:13:41] 2025-11-07 04:13:01,377 | INFO     | [job] validate thread has finished
[2025-11-06 21:13:41] 2025-11-07 04:13:02,913 | INFO     | [data] queue_monitor thread has finished
[2025-11-06 21:13:41] 2025-11-07 04:13:29,457 | INFO     | PID=815562 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-06 21:13:41] 2025-11-07 04:13:29,457 | INFO     | .. there are 4 such processes running
[2025-11-06 21:13:41] 2025-11-07 04:13:29,457 | INFO     | found 0 job(s) in 20 queues
[2025-11-06 21:13:41] 2025-11-07 04:13:29,457 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-06 21:13:41] 2025-11-07 04:13:29,457 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-06 21:13:41] 2025-11-07 04:13:36,581 | INFO     | [monitor] cgroup control has ended
[2025-11-06 21:13:41] 2025-11-07 04:13:36,771 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 127883542996800)>', '<ExcThread(monitor, started 127883165042432)>']
[2025-11-06 21:13:41] 2025-11-07 04:13:37,497 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-06 21:13:41] 2025-11-07 04:13:37,497 | INFO     | [monitor] control thread has ended
[2025-11-06 21:13:41] 2025-11-07 04:13:41,796 | INFO     | all workflow threads have been joined
[2025-11-06 21:13:41] 2025-11-07 04:13:41,796 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-06 21:13:41] 2025-11-07 04:13:41,796 | INFO     | traces error code: 0
[2025-11-06 21:13:41] 2025-11-07 04:13:41,796 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-06 21:13:41] 2025-11-07 04:13:41,852 [wrapper] ==== pilot stdout END ====
[2025-11-06 21:13:41] 2025-11-07 04:13:41,854 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-06 21:13:41] 2025-11-07 04:13:41,855 [wrapper] pilotpid: 815562
[2025-11-06 21:13:41] 2025-11-07 04:13:41,856 [wrapper] Pilot exit status: 0
[2025-11-06 21:13:41] 2025-11-07 04:13:41,861 [wrapper] pandaids: 6874037361
[2025-11-06 21:13:41] 2025-11-07 04:13:41,885 [wrapper] cleanup supervisor_pilot 1138247 815563
[2025-11-06 21:13:41] 2025-11-07 04:13:41,887 [wrapper] Test setup, not cleaning
[2025-11-06 21:13:41] 2025-11-07 04:13:41,888 [wrapper] apfmon messages muted
[2025-11-06 21:13:41] 2025-11-07 04:13:41,889 [wrapper] ==== wrapper stdout END ====
[2025-11-06 21:13:41] 2025-11-07 04:13:41,891 [wrapper] ==== wrapper stderr END ====
[2025-11-06 21:13:41]  *** Error codes and diagnostics ***
[2025-11-06 21:13:41]     "exeErrorCode": 0,
[2025-11-06 21:13:41]     "exeErrorDiag": "",
[2025-11-06 21:13:41]     "pilotErrorCode": 0,
[2025-11-06 21:13:41]     "pilotErrorDiag": "",
[2025-11-06 21:13:41]  *** Listing of results directory ***
[2025-11-06 21:13:41] total 1548972
[2025-11-06 21:13:41] -rw-r--r-- 1 boinc boinc     576529 Nov  6 04:52 pilot3.tar.gz
[2025-11-06 21:13:41] -rw-r--r-- 1 boinc boinc       5112 Nov  6 05:29 queuedata.json
[2025-11-06 21:13:41] -rwx------ 1 boinc boinc      36292 Nov  6 05:32 runpilot2-wrapper.sh
[2025-11-06 21:13:41] -rw-r--r-- 1 boinc boinc        100 Nov  6 08:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-06 21:13:41] -rwxr-xr-x 1 boinc boinc       7986 Nov  6 08:27 run_atlas
[2025-11-06 21:13:41] -rw-r--r-- 1 boinc boinc        105 Nov  6 08:27 job.xml
[2025-11-06 21:13:41] -rw-r--r-- 2 boinc boinc  320801850 Nov  6 08:27 EVNT.16513204._000002.pool.root.1
[2025-11-06 21:13:41] -rw-r--r-- 2 boinc boinc      15120 Nov  6 08:27 start_atlas.sh
[2025-11-06 21:13:41] drwxrwx--x 2 boinc boinc       4096 Nov  6 08:27 shared
[2025-11-06 21:13:41] -rw-r--r-- 2 boinc boinc     590124 Nov  6 08:27 input.tar.gz
[2025-11-06 21:13:41] -rw-r--r-- 1 boinc boinc          0 Nov  6 08:27 boinc_lockfile
[2025-11-06 21:13:41] -rw-r--r-- 1 boinc boinc       2916 Nov  6 08:27 pandaJob.out
[2025-11-06 21:13:41] -rw------- 1 boinc boinc     986470 Nov  6 08:27 agis_schedconf.cvmfs.json
[2025-11-06 21:13:41] drwx------ 5 boinc boinc       4096 Nov  6 08:27 pilot3
[2025-11-06 21:13:41] -rw-r--r-- 1 boinc boinc       9922 Nov  6 12:14 init_data.xml
[2025-11-06 21:13:41] -rw-r--r-- 1 boinc boinc        532 Nov  6 21:03 boinc_task_state.xml
[2025-11-06 21:13:41] -rw------- 1 boinc boinc 1244115469 Nov  6 21:12 HITS.47264539._000016.pool.root.1
[2025-11-06 21:13:41] -rw------- 1 boinc boinc         95 Nov  6 21:12 pilot_heartbeat.json
[2025-11-06 21:13:41] -rw------- 1 boinc boinc       1036 Nov  6 21:12 memory_monitor_summary.json
[2025-11-06 21:13:41] -rw------- 1 boinc boinc    1560632 Nov  6 21:12 agis_ddmendpoints.agis.ALL.json
[2025-11-06 21:13:41] -rw------- 1 boinc boinc    2026988 Nov  6 21:12 log.47264539._000016.job.log.tgz.1
[2025-11-06 21:13:41] -rw------- 1 boinc boinc      27311 Nov  6 21:12 heartbeat.json
[2025-11-06 21:13:41] -rw-r--r-- 1 boinc boinc       8192 Nov  6 21:13 boinc_mmap_file
[2025-11-06 21:13:41] -rw-r--r-- 1 boinc boinc         29 Nov  6 21:13 wrapper_checkpoint.txt
[2025-11-06 21:13:41] -rw------- 1 boinc boinc       4830 Nov  6 21:13 pilotlog.txt
[2025-11-06 21:13:41] -rw------- 1 boinc boinc    6590577 Nov  6 21:13 log.47264539._000016.job.log.1
[2025-11-06 21:13:41] -rw------- 1 boinc boinc        353 Nov  6 21:13 output.list
[2025-11-06 21:13:41] -rw-r--r-- 1 boinc boinc        620 Nov  6 21:13 runtime_log
[2025-11-06 21:13:41] -rw------- 1 boinc boinc    8652800 Nov  6 21:13 result.tar.gz
[2025-11-06 21:13:41] -rw-r--r-- 1 boinc boinc       8787 Nov  6 21:13 runtime_log.err
[2025-11-06 21:13:41] -rw------- 1 boinc boinc        663 Nov  6 21:13 p7iKDmvKEb8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqHJODmbmsmSm.diag
[2025-11-06 21:13:41] -rw-r--r-- 1 boinc boinc      21338 Nov  6 21:13 stderr.txt
[2025-11-06 21:13:41] HITS file was successfully produced:
[2025-11-06 21:13:41] -rw------- 1 boinc boinc 1244115469 Nov  6 21:12 shared/HITS.pool.root.1
[2025-11-06 21:13:41]  *** Contents of shared directory: ***
[2025-11-06 21:13:41] total 1537300
[2025-11-06 21:13:41] -rw-r--r-- 2 boinc boinc  320801850 Nov  6 08:27 ATLAS.root_0
[2025-11-06 21:13:41] -rw-r--r-- 2 boinc boinc      15120 Nov  6 08:27 start_atlas.sh
[2025-11-06 21:13:41] -rw-r--r-- 2 boinc boinc     590124 Nov  6 08:27 input.tar.gz
[2025-11-06 21:13:41] -rw------- 1 boinc boinc 1244115469 Nov  6 21:12 HITS.pool.root.1
[2025-11-06 21:13:41] -rw------- 1 boinc boinc    8652800 Nov  6 21:13 result.tar.gz
21:13:43 (807692): run_atlas exited; CPU time 361041.417060
21:13:43 (807692): called boinc_finish(0)

</stderr_txt>
]]>

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