Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
16:28:05 (1023264): wrapper (7.7.26015): starting
16:28:05 (1023264): wrapper: running run_atlas (--nthreads 8)
[2025-11-06 16:28:05] Arguments: --nthreads 8
[2025-11-06 16:28:05] Threads: 8
[2025-11-06 16:28:05] Checking for CVMFS
[2025-11-06 16:28:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-06 16:28:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-06 16:28:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-06 16:28:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-06 16:28:06] 2.13.3.0 744127 654 49368 152564 2 76 2738091 4096000 2757 130560 0 851923 99.430 355098 577 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-06 16:28:06] CVMFS is ok
[2025-11-06 16:28:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-06 16:28:06] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-06 16:28:06] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-06 16:28:06] Further information can be found at the LHC@home message board.
[2025-11-06 16:28:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-06 16:28:06] Checking for apptainer binary...
[2025-11-06 16:28:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-06 16:28:06] Running /usr/bin/apptainer --version
[2025-11-06 16:28:06] apptainer version 1.4.4
[2025-11-06 16:28:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-06 16:28:06] garage
[2025-11-06 16:28:06] apptainer works
[2025-11-06 16:28:06] Set ATHENA_PROC_NUMBER=8
[2025-11-06 16:28:06] Set ATHENA_CORE_NUMBER=8
[2025-11-06 16:28:06] Starting ATLAS job with PandaID=6874037390
[2025-11-06 16:28:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-07 05:16:34]  *** The last 200 lines of the pilot log: ***
[2025-11-07 05:16:34] 2025-11-07 12:15:59,701 | INFO     | monitor loop #3428: job 0:6874037390 is in state 'finished'
[2025-11-07 05:16:34] 2025-11-07 12:15:59,701 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-07 05:16:34] 2025-11-07 12:16:00,964 | INFO     | time since job start (46067s) is within the limit (172800.0s)
[2025-11-07 05:16:34] 2025-11-07 12:16:01,952 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-07 05:16:34] 2025-11-07 12:16:01,955 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4284.409562499999
[2025-11-07 05:16:34] 2025-11-07 12:16:01,958 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6874037390/memory_monitor_summary.json (trf name=prmon)
[2025-11-07 05:16:34] 2025-11-07 12:16:01,958 | INFO     | extracted standard info from prmon json
[2025-11-07 05:16:34] 2025-11-07 12:16:01,958 | INFO     | extracted standard memory fields from prmon json
[2025-11-07 05:16:34] 2025-11-07 12:16:01,958 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-07 05:16:34] 2025-11-07 12:16:01,964 | INFO     | fitting pss+swap vs Time
[2025-11-07 05:16:34] 2025-11-07 12:16:01,964 | INFO     | sum of square deviations: 133450024644.98807
[2025-11-07 05:16:34] 2025-11-07 12:16:01,970 | INFO     | sum of deviations: 1007554772511.4298
[2025-11-07 05:16:34] 2025-11-07 12:16:01,970 | INFO     | mean x: 1762494711.0039735
[2025-11-07 05:16:34] 2025-11-07 12:16:01,970 | INFO     | mean y: 3532543.523178808
[2025-11-07 05:16:34] 2025-11-07 12:16:01,970 | INFO     | intersect: -13303396116.26782
[2025-11-07 05:16:34] 2025-11-07 12:16:01,971 | INFO     | chi2: 4.9324550290801605
[2025-11-07 05:16:34] 2025-11-07 12:16:01,971 | INFO     | sum of square deviations: 130816218037.48814
[2025-11-07 05:16:34] 2025-11-07 12:16:01,977 | INFO     | sum of deviations: 1262945932823.3125
[2025-11-07 05:16:34] 2025-11-07 12:16:01,977 | INFO     | mean x: 1762494558.504
[2025-11-07 05:16:34] 2025-11-07 12:16:01,977 | INFO     | mean y: 3547316.0626666667
[2025-11-07 05:16:34] 2025-11-07 12:16:01,977 | INFO     | intersect: -17012197120.517496
[2025-11-07 05:16:34] 2025-11-07 12:16:01,978 | INFO     | chi2: 2.5990661410295677
[2025-11-07 05:16:34] 2025-11-07 12:16:01,978 | INFO     | current chi2=2.5990661410295677 (change=47.306845663947996 %)
[2025-11-07 05:16:34] 2025-11-07 12:16:01,978 | INFO     | sum of square deviations: 128217295804.98824
[2025-11-07 05:16:34] 2025-11-07 12:16:01,984 | INFO     | sum of deviations: 1307000696945.9634
[2025-11-07 05:16:34] 2025-11-07 12:16:01,984 | INFO     | mean x: 1762494406.004027
[2025-11-07 05:16:34] 2025-11-07 12:16:01,984 | INFO     | mean y: 3549890.0120805367
[2025-11-07 05:16:34] 2025-11-07 12:16:01,984 | INFO     | intersect: -17962680036.67621
[2025-11-07 05:16:34] 2025-11-07 12:16:01,985 | INFO     | chi2: 2.4001658538925255
[2025-11-07 05:16:34] 2025-11-07 12:16:01,985 | INFO     | current chi2=2.4001658538925255 (change=7.652759735396803 %)
[2025-11-07 05:16:34] 2025-11-07 12:16:01,985 | INFO     | right removable region: 744
[2025-11-07 05:16:34] 2025-11-07 12:16:01,985 | INFO     | sum of square deviations: 130816216207.48811
[2025-11-07 05:16:34] 2025-11-07 12:16:01,991 | INFO     | sum of deviations: 768232338510.1138
[2025-11-07 05:16:34] 2025-11-07 12:16:01,991 | INFO     | mean x: 1762494863.504
[2025-11-07 05:16:34] 2025-11-07 12:16:01,991 | INFO     | mean y: 3546373.9626666666
[2025-11-07 05:16:34] 2025-11-07 12:16:01,991 | INFO     | intersect: -10346894801.114191
[2025-11-07 05:16:34] 2025-11-07 12:16:01,992 | INFO     | chi2: 2.775562415609091
[2025-11-07 05:16:34] 2025-11-07 12:16:01,992 | INFO     | current chi2=2.775562415609091 (change=43.728581421517845 %)
[2025-11-07 05:16:34] 2025-11-07 12:16:01,992 | INFO     | sum of square deviations: 128217292144.98824
[2025-11-07 05:16:34] 2025-11-07 12:16:01,998 | INFO     | sum of deviations: 699109708418.4258
[2025-11-07 05:16:34] 2025-11-07 12:16:01,998 | INFO     | mean x: 1762495016.004027
[2025-11-07 05:16:34] 2025-11-07 12:16:01,998 | INFO     | mean y: 3550427.5248322147
[2025-11-07 05:16:34] 2025-11-07 12:16:01,998 | INFO     | intersect: -9606521319.5384
[2025-11-07 05:16:34] 2025-11-07 12:16:01,998 | INFO     | chi2: 2.6833053565887117
[2025-11-07 05:16:34] 2025-11-07 12:16:01,999 | INFO     | current chi2=2.6833053565887117 (change=3.323905039985695 %)
[2025-11-07 05:16:34] 2025-11-07 12:16:01,999 | INFO     | left removable region: 20
[2025-11-07 05:16:34] 2025-11-07 12:16:01,999 | INFO     | sum of square deviations: 117677504012.98756
[2025-11-07 05:16:34] 2025-11-07 12:16:02,005 | INFO     | sum of deviations: 909112049982.0127
[2025-11-07 05:16:34] 2025-11-07 12:16:02,005 | INFO     | mean x: 1762494985.5041437
[2025-11-07 05:16:34] 2025-11-07 12:16:02,005 | INFO     | mean y: 3573442.6629834254
[2025-11-07 05:16:34] 2025-11-07 12:16:02,005 | INFO     | intersect: -13612499083.636097
[2025-11-07 05:16:34] 2025-11-07 12:16:02,005 | INFO     | chi2: 0.097198193788393
[2025-11-07 05:16:34] 2025-11-07 12:16:02,005 | INFO     | current memory leak: 7.73 B/s (using 724 data points, chi2=0.10)
[2025-11-07 05:16:34] 2025-11-07 12:16:02,006 | INFO     | could have reported an average CPU frequency of 4505 MHz (29 samples)
[2025-11-07 05:16:34] 2025-11-07 12:16:02,006 | INFO     | ..............................
[2025-11-07 05:16:34] 2025-11-07 12:16:02,006 | INFO     | . Timing measurements:
[2025-11-07 05:16:34] 2025-11-07 12:16:02,006 | INFO     | . get job = 0 s
[2025-11-07 05:16:34] 2025-11-07 12:16:02,006 | INFO     | . initial setup = 2 s
[2025-11-07 05:16:34] 2025-11-07 12:16:02,006 | INFO     | . payload setup = 5 s
[2025-11-07 05:16:34] 2025-11-07 12:16:02,006 | INFO     | . stage-in = 0 s
[2025-11-07 05:16:34] 2025-11-07 12:16:02,006 | INFO     | . payload execution = 46034 s
[2025-11-07 05:16:34] 2025-11-07 12:16:02,006 | INFO     | . stage-out = 3 s
[2025-11-07 05:16:34] 2025-11-07 12:16:02,006 | INFO     | . log creation = 0 s
[2025-11-07 05:16:34] 2025-11-07 12:16:02,006 | INFO     | ..............................
[2025-11-07 05:16:34] 2025-11-07 12:16:02,399 | INFO     | 
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | job summary report
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | --------------------------------------------------
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | PanDA job id: 6874037390
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | task id: 47264539
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | errors: (none)
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | pilot state: finished 
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | transexitcode: 0
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | exeerrorcode: 0
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | exeerrordiag: 
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | exitcode: 0
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | exitmsg: OK
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | cpuconsumptiontime: 361723 s
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | nevents: 1000
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | neventsw: 0
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | pid: 1034438
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | pgrp: 1034438
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | corecount: 8
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | event service: False
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | sizes: {0: 2349502, 2: 2349764, 11: 2349792, 46043: 2415018, 46046: 2424030, 46049: 2424086, 46055: 2424460}
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | --------------------------------------------------
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | 
[2025-11-07 05:16:34] 2025-11-07 12:16:02,400 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-11-07 05:16:34] 2025-11-07 12:16:02,413 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | job 6874037390 has completed (purged errors)
[2025-11-07 05:16:34] 2025-11-07 12:16:02,414 | INFO     | overall cleanup function is called
[2025-11-07 05:16:34] 2025-11-07 12:16:03,423 | INFO     | --- collectZombieJob: --- 10, [1034438]
[2025-11-07 05:16:34] 2025-11-07 12:16:03,423 | INFO     | zombie collector waiting for pid 1034438
[2025-11-07 05:16:34] 2025-11-07 12:16:03,423 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-07 05:16:34] 2025-11-07 12:16:03,423 | INFO     | collected zombie processes
[2025-11-07 05:16:34] 2025-11-07 12:16:03,423 | INFO     | will attempt to kill all subprocesses of pid=1034438
[2025-11-07 05:16:34] 2025-11-07 12:16:03,500 | INFO     | process IDs to be killed: [1034438] (in reverse order)
[2025-11-07 05:16:34] 2025-11-07 12:16:03,536 | WARNING  | found no corresponding commands to process id(s)
[2025-11-07 05:16:34] 2025-11-07 12:16:03,537 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-07 05:16:34] 2025-11-07 12:16:03,539 | INFO     | did not find any defunct processes belonging to 1034438
[2025-11-07 05:16:34] 2025-11-07 12:16:03,542 | INFO     | did not find any defunct processes belonging to 1034438
[2025-11-07 05:16:34] 2025-11-07 12:16:03,542 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-07 05:16:34] 2025-11-07 12:16:03,542 | INFO     | ready for new job
[2025-11-07 05:16:34] 2025-11-07 12:16:03,542 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-07 05:16:34] 2025-11-07 12:16:03,545 | INFO     | ***************************************
[2025-11-07 05:16:34] 2025-11-07 12:16:03,545 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-07 05:16:34] 2025-11-07 12:16:03,545 | INFO     | ***************************************
[2025-11-07 05:16:34] 2025-11-07 12:16:03,545 | INFO     | 
[2025-11-07 05:16:34] 2025-11-07 12:16:03,546 | INFO     | architecture information:
[2025-11-07 05:16:34] 2025-11-07 12:16:03,546 | INFO     | executing command: cat /etc/os-release
[2025-11-07 05:16:34] 2025-11-07 12:16:03,556 | INFO     | cat /etc/os-release:
[2025-11-07 05:16:34] NAME="CentOS Linux"
[2025-11-07 05:16:34] VERSION="7 (Core)"
[2025-11-07 05:16:34] ID="centos"
[2025-11-07 05:16:34] ID_LIKE="rhel fedora"
[2025-11-07 05:16:34] VERSION_ID="7"
[2025-11-07 05:16:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-07 05:16:34] ANSI_COLOR="0;31"
[2025-11-07 05:16:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-07 05:16:34] HOME_URL="https://www.centos.org/"
[2025-11-07 05:16:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-07 05:16:34] 
[2025-11-07 05:16:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-07 05:16:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-07 05:16:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-07 05:16:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-07 05:16:34] 
[2025-11-07 05:16:34] 2025-11-07 12:16:03,556 | INFO     | ***************************************
[2025-11-07 05:16:34] 2025-11-07 12:16:04,059 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-11-07 05:16:34] 2025-11-07 12:16:04,070 | INFO     | sufficient remaining disk space (674275262464 B)
[2025-11-07 05:16:34] 2025-11-07 12:16:04,070 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-07 05:16:34] 2025-11-07 12:16:04,070 | INFO     | current server update state: UPDATING_FINAL
[2025-11-07 05:16:34] 2025-11-07 12:16:04,070 | INFO     | update_server=False
[2025-11-07 05:16:34] 2025-11-07 12:16:04,070 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-07 05:16:34] 2025-11-07 12:16:04,070 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-07 05:16:34] 2025-11-07 12:16:04,070 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-07 05:16:34] 2025-11-07 12:16:04,070 | INFO     | aborting loop
[2025-11-07 05:16:34] 2025-11-07 12:16:04,122 | INFO     | all data control threads have been joined
[2025-11-07 05:16:34] 2025-11-07 12:16:05,075 | INFO     | [job] retrieve thread has finished
[2025-11-07 05:16:34] 2025-11-07 12:16:05,075 | INFO     | [job] job monitor thread has finished
[2025-11-07 05:16:34] 2025-11-07 12:16:05,127 | INFO     | [data] control thread has finished
[2025-11-07 05:16:34] 2025-11-07 12:16:05,218 | INFO     | all job control threads have been joined
[2025-11-07 05:16:34] 2025-11-07 12:16:05,247 | INFO     | [payload] execute_payloads thread has finished
[2025-11-07 05:16:34] 2025-11-07 12:16:05,374 | INFO     | all payload control threads have been joined
[2025-11-07 05:16:34] 2025-11-07 12:16:05,879 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-07 05:16:34] 2025-11-07 12:16:05,912 | INFO     | [job] validate thread has finished
[2025-11-07 05:16:34] 2025-11-07 12:16:05,917 | INFO     | [data] copytool_in thread has finished
[2025-11-07 05:16:34] 2025-11-07 12:16:06,041 | INFO     | [payload] failed_post thread has finished
[2025-11-07 05:16:34] 2025-11-07 12:16:06,075 | INFO     | [data] copytool_out thread has finished
[2025-11-07 05:16:34] 2025-11-07 12:16:06,106 | INFO     | [job] create_data_payload thread has finished
[2025-11-07 05:16:34] 2025-11-07 12:16:06,153 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-07 05:16:34] 2025-11-07 12:16:06,224 | INFO     | [job] control thread has finished
[2025-11-07 05:16:34] 2025-11-07 12:16:06,281 | INFO     | [payload] validate_pre thread has finished
[2025-11-07 05:16:34] 2025-11-07 12:16:06,296 | INFO     | [payload] validate_post thread has finished
[2025-11-07 05:16:34] 2025-11-07 12:16:06,379 | INFO     | [payload] control thread has finished
[2025-11-07 05:16:34] 2025-11-07 12:16:07,061 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-07 05:16:34] 2025-11-07 12:16:08,066 | INFO     | [job] queue monitor thread has finished
[2025-11-07 05:16:34] 2025-11-07 12:16:10,158 | INFO     | [data] queue_monitor thread has finished
[2025-11-07 05:16:34] 2025-11-07 12:16:29,122 | INFO     | [monitor] cgroup control has ended
[2025-11-07 05:16:34] 2025-11-07 12:16:29,617 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 134672950613824)>', '<ExcThread(monitor, started 134672367486720)>']
[2025-11-07 05:16:34] 2025-11-07 12:16:34,127 | INFO     | PID=1027116 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-07 05:16:34] 2025-11-07 12:16:34,127 | INFO     | .. there are 3 such processes running
[2025-11-07 05:16:34] 2025-11-07 12:16:34,143 | INFO     | found 0 job(s) in 20 queues
[2025-11-07 05:16:34] 2025-11-07 12:16:34,143 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-07 05:16:34] 2025-11-07 12:16:34,143 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-07 05:16:34] 2025-11-07 12:16:34,143 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-07 05:16:34] 2025-11-07 12:16:34,143 | INFO     | [monitor] control thread has ended
[2025-11-07 05:16:34] 2025-11-07 12:16:34,622 | INFO     | all workflow threads have been joined
[2025-11-07 05:16:34] 2025-11-07 12:16:34,623 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-07 05:16:34] 2025-11-07 12:16:34,623 | INFO     | traces error code: 0
[2025-11-07 05:16:34] 2025-11-07 12:16:34,623 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-07 05:16:34] 2025-11-07 12:16:34,679 [wrapper] ==== pilot stdout END ====
[2025-11-07 05:16:34] 2025-11-07 12:16:34,681 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-07 05:16:34] 2025-11-07 12:16:34,682 [wrapper] pilotpid: 1027116
[2025-11-07 05:16:34] 2025-11-07 12:16:34,684 [wrapper] Pilot exit status: 0
[2025-11-07 05:16:34] 2025-11-07 12:16:34,689 [wrapper] pandaids: 6874037390
[2025-11-07 05:16:34] 2025-11-07 12:16:34,712 [wrapper] cleanup supervisor_pilot 1338486 1027117
[2025-11-07 05:16:34] 2025-11-07 12:16:34,714 [wrapper] Test setup, not cleaning
[2025-11-07 05:16:34] 2025-11-07 12:16:34,715 [wrapper] apfmon messages muted
[2025-11-07 05:16:34] 2025-11-07 12:16:34,717 [wrapper] ==== wrapper stdout END ====
[2025-11-07 05:16:34] 2025-11-07 12:16:34,719 [wrapper] ==== wrapper stderr END ====
[2025-11-07 05:16:34]  *** Error codes and diagnostics ***
[2025-11-07 05:16:34]     "exeErrorCode": 0,
[2025-11-07 05:16:34]     "exeErrorDiag": "",
[2025-11-07 05:16:34]     "pilotErrorCode": 0,
[2025-11-07 05:16:34]     "pilotErrorDiag": "",
[2025-11-07 05:16:34]  *** Listing of results directory ***
[2025-11-07 05:16:34] total 1544164
[2025-11-07 05:16:34] -rw-r--r-- 1 boinc boinc     576529 Nov  6 04:52 pilot3.tar.gz
[2025-11-07 05:16:34] -rw-r--r-- 1 boinc boinc       5112 Nov  6 05:29 queuedata.json
[2025-11-07 05:16:34] -rwx------ 1 boinc boinc      36292 Nov  6 05:32 runpilot2-wrapper.sh
[2025-11-07 05:16:34] -rw-r--r-- 1 boinc boinc        100 Nov  6 16:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-07 05:16:34] -rwxr-xr-x 1 boinc boinc       7986 Nov  6 16:28 run_atlas
[2025-11-07 05:16:34] -rw-r--r-- 1 boinc boinc        105 Nov  6 16:28 job.xml
[2025-11-07 05:16:34] -rw-r--r-- 2 boinc boinc     590120 Nov  6 16:28 input.tar.gz
[2025-11-07 05:16:34] -rw-r--r-- 1 boinc boinc       9913 Nov  6 16:28 init_data.xml
[2025-11-07 05:16:34] -rw-r--r-- 2 boinc boinc  319544373 Nov  6 16:28 EVNT.16513204._000005.pool.root.1
[2025-11-07 05:16:34] -rw-r--r-- 2 boinc boinc      15120 Nov  6 16:28 start_atlas.sh
[2025-11-07 05:16:34] drwxrwx--x 2 boinc boinc       4096 Nov  6 16:28 shared
[2025-11-07 05:16:34] -rw-r--r-- 1 boinc boinc          0 Nov  6 16:28 boinc_lockfile
[2025-11-07 05:16:34] -rw-r--r-- 1 boinc boinc       2915 Nov  6 16:28 pandaJob.out
[2025-11-07 05:16:34] -rw------- 1 boinc boinc     984694 Nov  6 16:28 agis_schedconf.cvmfs.json
[2025-11-07 05:16:34] drwx------ 5 boinc boinc       4096 Nov  6 16:28 pilot3
[2025-11-07 05:16:34] -rw-r--r-- 1 boinc boinc        533 Nov  7 05:07 boinc_task_state.xml
[2025-11-07 05:16:34] -rw------- 1 boinc boinc 1240439309 Nov  7 05:15 HITS.47264539._000045.pool.root.1
[2025-11-07 05:16:34] -rw------- 1 boinc boinc       1037 Nov  7 05:15 memory_monitor_summary.json
[2025-11-07 05:16:34] -rw------- 1 boinc boinc    1560632 Nov  7 05:15 agis_ddmendpoints.agis.ALL.json
[2025-11-07 05:16:34] -rw------- 1 boinc boinc    2013888 Nov  7 05:15 log.47264539._000045.job.log.tgz.1
[2025-11-07 05:16:34] -rw------- 1 boinc boinc      27228 Nov  7 05:16 heartbeat.json
[2025-11-07 05:16:34] -rw-r--r-- 1 boinc boinc       8192 Nov  7 05:16 boinc_mmap_file
[2025-11-07 05:16:34] -rw-r--r-- 1 boinc boinc         29 Nov  7 05:16 wrapper_checkpoint.txt
[2025-11-07 05:16:34] -rw------- 1 boinc boinc         95 Nov  7 05:16 pilot_heartbeat.json
[2025-11-07 05:16:34] -rw------- 1 boinc boinc       4831 Nov  7 05:16 pilotlog.txt
[2025-11-07 05:16:34] -rw------- 1 boinc boinc    6609868 Nov  7 05:16 log.47264539._000045.job.log.1
[2025-11-07 05:16:34] -rw------- 1 boinc boinc        353 Nov  7 05:16 output.list
[2025-11-07 05:16:34] -rw-r--r-- 1 boinc boinc        620 Nov  7 05:16 runtime_log
[2025-11-07 05:16:34] -rw------- 1 boinc boinc    8663040 Nov  7 05:16 result.tar.gz
[2025-11-07 05:16:34] -rw------- 1 boinc boinc        663 Nov  7 05:16 wV4MDm1KEb8n9Rq4apOajLDm4fhM0noT9bVof3QYDmxXqMDmN4TBjn.diag
[2025-11-07 05:16:34] -rw-r--r-- 1 boinc boinc       8787 Nov  7 05:16 runtime_log.err
[2025-11-07 05:16:34] -rw-r--r-- 1 boinc boinc      21395 Nov  7 05:16 stderr.txt
[2025-11-07 05:16:34] HITS file was successfully produced:
[2025-11-07 05:16:34] -rw------- 1 boinc boinc 1240439309 Nov  7 05:15 shared/HITS.pool.root.1
[2025-11-07 05:16:34]  *** Contents of shared directory: ***
[2025-11-07 05:16:34] total 1532488
[2025-11-07 05:16:34] -rw-r--r-- 2 boinc boinc     590120 Nov  6 16:28 input.tar.gz
[2025-11-07 05:16:34] -rw-r--r-- 2 boinc boinc  319544373 Nov  6 16:28 ATLAS.root_0
[2025-11-07 05:16:34] -rw-r--r-- 2 boinc boinc      15120 Nov  6 16:28 start_atlas.sh
[2025-11-07 05:16:34] -rw------- 1 boinc boinc 1240439309 Nov  7 05:15 HITS.pool.root.1
[2025-11-07 05:16:34] -rw------- 1 boinc boinc    8663040 Nov  7 05:16 result.tar.gz
05:16:36 (1023264): run_atlas exited; CPU time 361497.763307
05:16:36 (1023264): called boinc_finish(0)

</stderr_txt>
]]>

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