Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
05:33:33 (743845): wrapper (7.7.26015): starting
05:33:33 (743845): wrapper: running run_atlas (--nthreads 8)
[2025-11-06 05:33:33] Arguments: --nthreads 8
[2025-11-06 05:33:33] Threads: 8
[2025-11-06 05:33:33] Checking for CVMFS
[2025-11-06 05:33:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-06 05:33:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-06 05:33:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-06 05:33:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-06 05:33:37] 2.13.3.0 744127 0 25056 152539 3 1 1701957 4096000 0 130560 0 0 0.000 1291 795 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-06 05:33:37] CVMFS is ok
[2025-11-06 05:33:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-06 05:33:37] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-06 05:33:37] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-06 05:33:37] Further information can be found at the LHC@home message board.
[2025-11-06 05:33:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-06 05:33:37] Checking for apptainer binary...
[2025-11-06 05:33:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-06 05:33:37] Running /usr/bin/apptainer --version
[2025-11-06 05:33:37] apptainer version 1.4.4
[2025-11-06 05:33:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-06 05:33:37] garage
[2025-11-06 05:33:37] apptainer works
[2025-11-06 05:33:37] Set ATHENA_PROC_NUMBER=8
[2025-11-06 05:33:37] Set ATHENA_CORE_NUMBER=8
[2025-11-06 05:33:37] Starting ATLAS job with PandaID=6874037348
[2025-11-06 05:33:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-06 16:15:58]  *** The last 200 lines of the pilot log: ***
[2025-11-06 16:15:58] 2025-11-06 23:15:03,764 | INFO     | executing command: lscpu
[2025-11-06 16:15:58] 2025-11-06 23:15:03,784 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-06 16:15:58] 2025-11-06 23:15:04,399 | INFO     | time since job start (38473s) is within the limit (172800.0s)
[2025-11-06 16:15:58] 2025-11-06 23:15:06,082 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-06 16:15:58] 2025-11-06 23:15:06,085 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4647.444218750001
[2025-11-06 16:15:58] 2025-11-06 23:15:06,088 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6874037348/memory_monitor_summary.json (trf name=prmon)
[2025-11-06 16:15:58] 2025-11-06 23:15:06,088 | INFO     | extracted standard info from prmon json
[2025-11-06 16:15:58] 2025-11-06 23:15:06,088 | INFO     | extracted standard memory fields from prmon json
[2025-11-06 16:15:58] 2025-11-06 23:15:06,089 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-06 16:15:58] 2025-11-06 23:15:06,093 | INFO     | fitting pss+swap vs Time
[2025-11-06 16:15:58] 2025-11-06 23:15:06,094 | INFO     | sum of square deviations: 77535211897.5
[2025-11-06 16:15:58] 2025-11-06 23:15:06,098 | INFO     | sum of deviations: 947195535534.5002
[2025-11-06 16:15:58] 2025-11-06 23:15:06,098 | INFO     | mean x: 1762451653.5
[2025-11-06 16:15:58] 2025-11-06 23:15:06,098 | INFO     | mean y: 3525479.950793651
[2025-11-06 16:15:58] 2025-11-06 23:15:06,098 | INFO     | intersect: -21527160990.571697
[2025-11-06 16:15:58] 2025-11-06 23:15:06,098 | INFO     | chi2: 8.081003788598597
[2025-11-06 16:15:58] 2025-11-06 23:15:06,099 | INFO     | sum of square deviations: 75703745000.0
[2025-11-06 16:15:58] 2025-11-06 23:15:06,103 | INFO     | sum of deviations: 1120478493655.9995
[2025-11-06 16:15:58] 2025-11-06 23:15:06,103 | INFO     | mean x: 1762451501.0
[2025-11-06 16:15:58] 2025-11-06 23:15:06,103 | INFO     | mean y: 3539883.4304
[2025-11-06 16:15:58] 2025-11-06 23:15:06,103 | INFO     | intersect: -26082210603.31547
[2025-11-06 16:15:58] 2025-11-06 23:15:06,103 | INFO     | chi2: 6.437282366736963
[2025-11-06 16:15:58] 2025-11-06 23:15:06,103 | INFO     | current chi2=6.437282366736963 (change=20.340559970789062 %)
[2025-11-06 16:15:58] 2025-11-06 23:15:06,103 | INFO     | right removable region: 624
[2025-11-06 16:15:58] 2025-11-06 23:15:06,103 | INFO     | sum of square deviations: 75703745000.0
[2025-11-06 16:15:58] 2025-11-06 23:15:06,108 | INFO     | sum of deviations: 642916390437.9999
[2025-11-06 16:15:58] 2025-11-06 23:15:06,108 | INFO     | mean x: 1762451806.0
[2025-11-06 16:15:58] 2025-11-06 23:15:06,108 | INFO     | mean y: 3550807.0064
[2025-11-06 16:15:58] 2025-11-06 23:15:06,108 | INFO     | intersect: -14964125540.23975
[2025-11-06 16:15:58] 2025-11-06 23:15:06,108 | INFO     | chi2: 3.913255453686711
[2025-11-06 16:15:58] 2025-11-06 23:15:06,108 | INFO     | current chi2=3.913255453686711 (change=51.57463656671116 %)
[2025-11-06 16:15:58] 2025-11-06 23:15:06,109 | INFO     | sum of square deviations: 73901348415.0
[2025-11-06 16:15:58] 2025-11-06 23:15:06,113 | INFO     | sum of deviations: 441425782182.49994
[2025-11-06 16:15:58] 2025-11-06 23:15:06,113 | INFO     | mean x: 1762451958.5
[2025-11-06 16:15:58] 2025-11-06 23:15:06,113 | INFO     | mean y: 3567827.9532258064
[2025-11-06 16:15:58] 2025-11-06 23:15:06,113 | INFO     | intersect: -10523868423.562178
[2025-11-06 16:15:58] 2025-11-06 23:15:06,113 | INFO     | chi2: 1.9628977396481595
[2025-11-06 16:15:58] 2025-11-06 23:15:06,113 | INFO     | current chi2=1.9628977396481595 (change=49.83977501905997 %)
[2025-11-06 16:15:58] 2025-11-06 23:15:06,113 | INFO     | sum of square deviations: 72127789580.0
[2025-11-06 16:15:58] 2025-11-06 23:15:06,117 | INFO     | sum of deviations: 394376575115.9998
[2025-11-06 16:15:58] 2025-11-06 23:15:06,118 | INFO     | mean x: 1762452111.0
[2025-11-06 16:15:58] 2025-11-06 23:15:06,118 | INFO     | mean y: 3571869.998373984
[2025-11-06 16:15:58] 2025-11-06 23:15:06,118 | INFO     | intersect: -9633072083.594748
[2025-11-06 16:15:58] 2025-11-06 23:15:06,118 | INFO     | chi2: 1.900501705794364
[2025-11-06 16:15:58] 2025-11-06 23:15:06,118 | INFO     | current chi2=1.900501705794364 (change=3.1787714965212426 %)
[2025-11-06 16:15:58] 2025-11-06 23:15:06,118 | INFO     | left removable region: 30
[2025-11-06 16:15:58] 2025-11-06 23:15:06,118 | INFO     | sum of square deviations: 64988502232.5
[2025-11-06 16:15:58] 2025-11-06 23:15:06,122 | INFO     | sum of deviations: 464880444991.5
[2025-11-06 16:15:58] 2025-11-06 23:15:06,122 | INFO     | mean x: 1762452385.5
[2025-11-06 16:15:58] 2025-11-06 23:15:06,122 | INFO     | mean y: 3598191.196969697
[2025-11-06 16:15:58] 2025-11-06 23:15:06,122 | INFO     | intersect: -12603703425.270096
[2025-11-06 16:15:58] 2025-11-06 23:15:06,123 | INFO     | chi2: 0.08677325893269075
[2025-11-06 16:15:58] 2025-11-06 23:15:06,123 | INFO     | current memory leak: 7.15 B/s (using 594 data points, chi2=0.09)
[2025-11-06 16:15:58] 2025-11-06 23:15:06,123 | INFO     | could have reported an average CPU frequency of 4475 MHz (25 samples)
[2025-11-06 16:15:58] 2025-11-06 23:15:06,123 | INFO     | ..............................
[2025-11-06 16:15:58] 2025-11-06 23:15:06,123 | INFO     | . Timing measurements:
[2025-11-06 16:15:58] 2025-11-06 23:15:06,123 | INFO     | . get job = 0 s
[2025-11-06 16:15:58] 2025-11-06 23:15:06,123 | INFO     | . initial setup = 2 s
[2025-11-06 16:15:58] 2025-11-06 23:15:06,123 | INFO     | . payload setup = 24 s
[2025-11-06 16:15:58] 2025-11-06 23:15:06,123 | INFO     | . stage-in = 0 s
[2025-11-06 16:15:58] 2025-11-06 23:15:06,123 | INFO     | . payload execution = 38425 s
[2025-11-06 16:15:58] 2025-11-06 23:15:06,123 | INFO     | . stage-out = 3 s
[2025-11-06 16:15:58] 2025-11-06 23:15:06,123 | INFO     | . log creation = 0 s
[2025-11-06 16:15:58] 2025-11-06 23:15:06,123 | INFO     | ..............................
[2025-11-06 16:15:58] 2025-11-06 23:15:06,172 | INFO     | 
[2025-11-06 16:15:58] 2025-11-06 23:15:06,172 | INFO     | job summary report
[2025-11-06 16:15:58] 2025-11-06 23:15:06,172 | INFO     | --------------------------------------------------
[2025-11-06 16:15:58] 2025-11-06 23:15:06,172 | INFO     | PanDA job id: 6874037348
[2025-11-06 16:15:58] 2025-11-06 23:15:06,172 | INFO     | task id: 47264539
[2025-11-06 16:15:58] 2025-11-06 23:15:06,172 | INFO     | errors: (none)
[2025-11-06 16:15:58] 2025-11-06 23:15:06,172 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-06 16:15:58] 2025-11-06 23:15:06,172 | INFO     | pilot state: finished 
[2025-11-06 16:15:58] 2025-11-06 23:15:06,172 | INFO     | transexitcode: 0
[2025-11-06 16:15:58] 2025-11-06 23:15:06,172 | INFO     | exeerrorcode: 0
[2025-11-06 16:15:58] 2025-11-06 23:15:06,172 | INFO     | exeerrordiag: 
[2025-11-06 16:15:58] 2025-11-06 23:15:06,173 | INFO     | exitcode: 0
[2025-11-06 16:15:58] 2025-11-06 23:15:06,173 | INFO     | exitmsg: OK
[2025-11-06 16:15:58] 2025-11-06 23:15:06,173 | INFO     | cpuconsumptiontime: 299784 s
[2025-11-06 16:15:58] 2025-11-06 23:15:06,173 | INFO     | nevents: 1000
[2025-11-06 16:15:58] 2025-11-06 23:15:06,173 | INFO     | neventsw: 0
[2025-11-06 16:15:58] 2025-11-06 23:15:06,173 | INFO     | pid: 766764
[2025-11-06 16:15:58] 2025-11-06 23:15:06,173 | INFO     | pgrp: 766764
[2025-11-06 16:15:58] 2025-11-06 23:15:06,173 | INFO     | corecount: 8
[2025-11-06 16:15:58] 2025-11-06 23:15:06,173 | INFO     | event service: False
[2025-11-06 16:15:58] 2025-11-06 23:15:06,173 | INFO     | sizes: {0: 2349549, 1: 2349811, 10: 2349839, 38453: 2412439, 38456: 2421451, 38459: 2421507, 38463: 2421945}
[2025-11-06 16:15:58] 2025-11-06 23:15:06,173 | INFO     | --------------------------------------------------
[2025-11-06 16:15:58] 2025-11-06 23:15:06,173 | INFO     | 
[2025-11-06 16:15:58] 2025-11-06 23:15:06,173 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-11-06 16:15:58] 2025-11-06 23:15:06,186 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,186 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,186 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,186 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,186 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,186 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,186 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,186 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,186 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,186 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,186 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,186 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,187 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,187 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,187 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,187 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,187 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,187 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-06 16:15:58] 2025-11-06 23:15:06,187 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,187 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-06 16:15:58] 2025-11-06 23:15:06,187 | INFO     | job 6874037348 has completed (purged errors)
[2025-11-06 16:15:58] 2025-11-06 23:15:06,187 | INFO     | overall cleanup function is called
[2025-11-06 16:15:58] 2025-11-06 23:15:07,199 | INFO     | --- collectZombieJob: --- 10, [766764]
[2025-11-06 16:15:58] 2025-11-06 23:15:07,199 | INFO     | zombie collector waiting for pid 766764
[2025-11-06 16:15:58] 2025-11-06 23:15:07,199 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-06 16:15:58] 2025-11-06 23:15:07,199 | INFO     | collected zombie processes
[2025-11-06 16:15:58] 2025-11-06 23:15:07,199 | INFO     | will attempt to kill all subprocesses of pid=766764
[2025-11-06 16:15:58] 2025-11-06 23:15:07,277 | INFO     | process IDs to be killed: [766764] (in reverse order)
[2025-11-06 16:15:58] 2025-11-06 23:15:07,314 | WARNING  | found no corresponding commands to process id(s)
[2025-11-06 16:15:58] 2025-11-06 23:15:07,314 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-06 16:15:58] 2025-11-06 23:15:07,317 | INFO     | did not find any defunct processes belonging to 766764
[2025-11-06 16:15:58] 2025-11-06 23:15:07,319 | INFO     | did not find any defunct processes belonging to 766764
[2025-11-06 16:15:58] 2025-11-06 23:15:07,320 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-06 16:15:58] 2025-11-06 23:15:07,320 | INFO     | ready for new job
[2025-11-06 16:15:58] 2025-11-06 23:15:07,320 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-06 16:15:58] 2025-11-06 23:15:07,322 | INFO     | ***************************************
[2025-11-06 16:15:58] 2025-11-06 23:15:07,322 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-06 16:15:58] 2025-11-06 23:15:07,322 | INFO     | ***************************************
[2025-11-06 16:15:58] 2025-11-06 23:15:07,322 | INFO     | 
[2025-11-06 16:15:58] 2025-11-06 23:15:07,323 | INFO     | architecture information:
[2025-11-06 16:15:58] 2025-11-06 23:15:07,323 | INFO     | executing command: cat /etc/os-release
[2025-11-06 16:15:58] 2025-11-06 23:15:07,333 | INFO     | cat /etc/os-release:
[2025-11-06 16:15:58] NAME="CentOS Linux"
[2025-11-06 16:15:58] VERSION="7 (Core)"
[2025-11-06 16:15:58] ID="centos"
[2025-11-06 16:15:58] ID_LIKE="rhel fedora"
[2025-11-06 16:15:58] VERSION_ID="7"
[2025-11-06 16:15:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-06 16:15:58] ANSI_COLOR="0;31"
[2025-11-06 16:15:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-06 16:15:58] HOME_URL="https://www.centos.org/"
[2025-11-06 16:15:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-06 16:15:58] 
[2025-11-06 16:15:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-06 16:15:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-06 16:15:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-06 16:15:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-06 16:15:58] 
[2025-11-06 16:15:58] 2025-11-06 23:15:07,333 | INFO     | ***************************************
[2025-11-06 16:15:58] 2025-11-06 23:15:07,836 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-11-06 16:15:58] 2025-11-06 23:15:07,847 | INFO     | sufficient remaining disk space (671314083840 B)
[2025-11-06 16:15:58] 2025-11-06 23:15:07,847 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-06 16:15:58] 2025-11-06 23:15:07,847 | INFO     | current server update state: UPDATING_FINAL
[2025-11-06 16:15:58] 2025-11-06 23:15:07,847 | INFO     | update_server=False
[2025-11-06 16:15:58] 2025-11-06 23:15:07,847 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-06 16:15:58] 2025-11-06 23:15:07,847 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-06 16:15:58] 2025-11-06 23:15:07,848 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-06 16:15:58] 2025-11-06 23:15:07,848 | INFO     | aborting loop
[2025-11-06 16:15:58] 2025-11-06 23:15:07,959 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-06 16:15:58] 2025-11-06 23:15:08,285 | INFO     | all data control threads have been joined
[2025-11-06 16:15:58] 2025-11-06 23:15:08,644 | INFO     | all payload control threads have been joined
[2025-11-06 16:15:58] 2025-11-06 23:15:08,659 | INFO     | all job control threads have been joined
[2025-11-06 16:15:58] 2025-11-06 23:15:08,852 | INFO     | [job] retrieve thread has finished
[2025-11-06 16:15:58] 2025-11-06 23:15:08,853 | INFO     | [job] queue monitor thread has finished
[2025-11-06 16:15:58] 2025-11-06 23:15:08,853 | INFO     | [job] job monitor thread has finished
[2025-11-06 16:15:58] 2025-11-06 23:15:08,914 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-06 16:15:58] 2025-11-06 23:15:09,108 | INFO     | [job] validate thread has finished
[2025-11-06 16:15:58] 2025-11-06 23:15:09,195 | INFO     | [payload] validate_pre thread has finished
[2025-11-06 16:15:58] 2025-11-06 23:15:09,202 | INFO     | [payload] execute_payloads thread has finished
[2025-11-06 16:15:58] 2025-11-06 23:15:09,264 | INFO     | [data] copytool_in thread has finished
[2025-11-06 16:15:58] 2025-11-06 23:15:09,291 | INFO     | [data] control thread has finished
[2025-11-06 16:15:58] 2025-11-06 23:15:09,466 | INFO     | [job] create_data_payload thread has finished
[2025-11-06 16:15:58] 2025-11-06 23:15:09,650 | INFO     | [payload] control thread has finished
[2025-11-06 16:15:58] 2025-11-06 23:15:09,664 | INFO     | [job] control thread has finished
[2025-11-06 16:15:58] 2025-11-06 23:15:09,893 | INFO     | [payload] failed_post thread has finished
[2025-11-06 16:15:58] 2025-11-06 23:15:09,964 | INFO     | [data] copytool_out thread has finished
[2025-11-06 16:15:58] 2025-11-06 23:15:10,057 | INFO     | [payload] validate_post thread has finished
[2025-11-06 16:15:58] 2025-11-06 23:15:10,275 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-06 16:15:58] 2025-11-06 23:15:12,916 | INFO     | [data] queue_monitor thread has finished
[2025-11-06 16:15:58] 2025-11-06 23:15:37,555 | INFO     | PID=752137 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-06 16:15:58] 2025-11-06 23:15:37,555 | INFO     | .. there are 4 such processes running
[2025-11-06 16:15:58] 2025-11-06 23:15:37,555 | INFO     | found 0 job(s) in 20 queues
[2025-11-06 16:15:58] 2025-11-06 23:15:37,555 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-06 16:15:58] 2025-11-06 23:15:37,555 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-06 16:15:58] 2025-11-06 23:15:51,465 | INFO     | [monitor] cgroup control has ended
[2025-11-06 16:15:58] 2025-11-06 23:15:53,426 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126078581761856)>', '<ExcThread(monitor, started 126078184064768)>']
[2025-11-06 16:15:58] 2025-11-06 23:15:53,626 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-06 16:15:58] 2025-11-06 23:15:53,626 | INFO     | [monitor] control thread has ended
[2025-11-06 16:15:58] 2025-11-06 23:15:58,451 | INFO     | all workflow threads have been joined
[2025-11-06 16:15:58] 2025-11-06 23:15:58,451 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-06 16:15:58] 2025-11-06 23:15:58,451 | INFO     | traces error code: 0
[2025-11-06 16:15:58] 2025-11-06 23:15:58,451 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-06 16:15:58] 2025-11-06 23:15:58,513 [wrapper] ==== pilot stdout END ====
[2025-11-06 16:15:58] 2025-11-06 23:15:58,515 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-06 16:15:58] 2025-11-06 23:15:58,516 [wrapper] pilotpid: 752137
[2025-11-06 16:15:58] 2025-11-06 23:15:58,518 [wrapper] Pilot exit status: 0
[2025-11-06 16:15:58] 2025-11-06 23:15:58,524 [wrapper] pandaids: 6874037348
[2025-11-06 16:15:58] 2025-11-06 23:15:58,548 [wrapper] cleanup supervisor_pilot  994584 752138
[2025-11-06 16:15:58] 2025-11-06 23:15:58,550 [wrapper] Test setup, not cleaning
[2025-11-06 16:15:58] 2025-11-06 23:15:58,551 [wrapper] apfmon messages muted
[2025-11-06 16:15:58] 2025-11-06 23:15:58,553 [wrapper] ==== wrapper stdout END ====
[2025-11-06 16:15:58] 2025-11-06 23:15:58,555 [wrapper] ==== wrapper stderr END ====
[2025-11-06 16:15:58]  *** Error codes and diagnostics ***
[2025-11-06 16:15:58]     "exeErrorCode": 0,
[2025-11-06 16:15:58]     "exeErrorDiag": "",
[2025-11-06 16:15:58]     "pilotErrorCode": 0,
[2025-11-06 16:15:58]     "pilotErrorDiag": "",
[2025-11-06 16:15:58]  *** Listing of results directory ***
[2025-11-06 16:15:58] total 1533196
[2025-11-06 16:15:58] -rw-r--r-- 1 boinc boinc     576529 Nov  6 04:52 pilot3.tar.gz
[2025-11-06 16:15:58] -rw-r--r-- 1 boinc boinc       5112 Nov  6 05:29 queuedata.json
[2025-11-06 16:15:58] -rwx------ 1 boinc boinc      36292 Nov  6 05:32 runpilot2-wrapper.sh
[2025-11-06 16:15:58] -rw-r--r-- 1 boinc boinc        100 Nov  6 05:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-06 16:15:58] -rwxr-xr-x 1 boinc boinc       7986 Nov  6 05:33 run_atlas
[2025-11-06 16:15:58] -rw-r--r-- 1 boinc boinc        105 Nov  6 05:33 job.xml
[2025-11-06 16:15:58] -rw-r--r-- 2 boinc boinc  318500604 Nov  6 05:33 EVNT.16513204._000001.pool.root.1
[2025-11-06 16:15:58] -rw-r--r-- 2 boinc boinc      15120 Nov  6 05:33 start_atlas.sh
[2025-11-06 16:15:58] drwxrwx--x 2 boinc boinc       4096 Nov  6 05:33 shared
[2025-11-06 16:15:58] -rw-r--r-- 2 boinc boinc     590121 Nov  6 05:33 input.tar.gz
[2025-11-06 16:15:58] -rw-r--r-- 1 boinc boinc          0 Nov  6 05:33 boinc_lockfile
[2025-11-06 16:15:58] -rw-r--r-- 1 boinc boinc       2914 Nov  6 05:33 pandaJob.out
[2025-11-06 16:15:58] -rw------- 1 boinc boinc     985759 Nov  6 05:33 agis_schedconf.cvmfs.json
[2025-11-06 16:15:58] drwx------ 5 boinc boinc       4096 Nov  6 05:33 pilot3
[2025-11-06 16:15:58] -rw-r--r-- 1 boinc boinc       9922 Nov  6 12:14 init_data.xml
[2025-11-06 16:15:58] -rw-r--r-- 1 boinc boinc        532 Nov  6 16:07 boinc_task_state.xml
[2025-11-06 16:15:58] -rw------- 1 boinc boinc 1232556284 Nov  6 16:14 HITS.47264539._000003.pool.root.1
[2025-11-06 16:15:58] -rw------- 1 boinc boinc       1035 Nov  6 16:14 memory_monitor_summary.json
[2025-11-06 16:15:58] -rw------- 1 boinc boinc    1560632 Nov  6 16:14 agis_ddmendpoints.agis.ALL.json
[2025-11-06 16:15:58] -rw------- 1 boinc boinc    1917851 Nov  6 16:14 log.47264539._000003.job.log.tgz.1
[2025-11-06 16:15:58] -rw------- 1 boinc boinc         95 Nov  6 16:15 pilot_heartbeat.json
[2025-11-06 16:15:58] -rw------- 1 boinc boinc      27891 Nov  6 16:15 heartbeat.json
[2025-11-06 16:15:58] -rw-r--r-- 1 boinc boinc       8192 Nov  6 16:15 boinc_mmap_file
[2025-11-06 16:15:58] -rw-r--r-- 1 boinc boinc         29 Nov  6 16:15 wrapper_checkpoint.txt
[2025-11-06 16:15:58] -rw------- 1 boinc boinc       4830 Nov  6 16:15 pilotlog.txt
[2025-11-06 16:15:58] -rw------- 1 boinc boinc    5550891 Nov  6 16:15 log.47264539._000003.job.log.1
[2025-11-06 16:15:58] -rw------- 1 boinc boinc        353 Nov  6 16:15 output.list
[2025-11-06 16:15:58] -rw-r--r-- 1 boinc boinc        620 Nov  6 16:15 runtime_log
[2025-11-06 16:15:58] -rw------- 1 boinc boinc    7505920 Nov  6 16:15 result.tar.gz
[2025-11-06 16:15:58] -rw-r--r-- 1 boinc boinc       8787 Nov  6 16:15 runtime_log.err
[2025-11-06 16:15:58] -rw------- 1 boinc boinc        663 Nov  6 16:15 RqTKDmvKEb8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeHJODmajXlHn.diag
[2025-11-06 16:15:58] -rw-r--r-- 1 boinc boinc      21344 Nov  6 16:15 stderr.txt
[2025-11-06 16:15:58] HITS file was successfully produced:
[2025-11-06 16:15:58] -rw------- 1 boinc boinc 1232556284 Nov  6 16:14 shared/HITS.pool.root.1
[2025-11-06 16:15:58]  *** Contents of shared directory: ***
[2025-11-06 16:15:58] total 1522644
[2025-11-06 16:15:58] -rw-r--r-- 2 boinc boinc  318500604 Nov  6 05:33 ATLAS.root_0
[2025-11-06 16:15:58] -rw-r--r-- 2 boinc boinc      15120 Nov  6 05:33 start_atlas.sh
[2025-11-06 16:15:58] -rw-r--r-- 2 boinc boinc     590121 Nov  6 05:33 input.tar.gz
[2025-11-06 16:15:58] -rw------- 1 boinc boinc 1232556284 Nov  6 16:14 HITS.pool.root.1
[2025-11-06 16:15:58] -rw------- 1 boinc boinc    7505920 Nov  6 16:15 result.tar.gz
16:15:59 (743845): run_atlas exited; CPU time 299580.970064
16:15:59 (743845): called boinc_finish(0)

</stderr_txt>
]]>

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