Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
03:30:38 (719268): wrapper (7.7.26015): starting
03:30:38 (719268): wrapper: running run_atlas (--nthreads 8)
[2025-11-06 03:30:38] Arguments: --nthreads 8
[2025-11-06 03:30:38] Threads: 8
[2025-11-06 03:30:38] Checking for CVMFS
[2025-11-06 03:30:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-06 03:30:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-06 03:30:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-06 03:30:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-06 03:30:39] 2.13.3.0 559165 107 49492 152534 0 188 1692133 4096001 922 130560 0 450816 99.990 9543 600 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-06 03:30:39] CVMFS is ok
[2025-11-06 03:30:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-06 03:30:39] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-06 03:30:39] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-06 03:30:39] Further information can be found at the LHC@home message board.
[2025-11-06 03:30:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-06 03:30:39] Checking for apptainer binary...
[2025-11-06 03:30:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-06 03:30:39] Running /usr/bin/apptainer --version
[2025-11-06 03:30:39] apptainer version 1.4.4
[2025-11-06 03:30:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-06 03:30:39] garage
[2025-11-06 03:30:39] apptainer works
[2025-11-06 03:30:39] Set ATHENA_PROC_NUMBER=8
[2025-11-06 03:30:39] Set ATHENA_CORE_NUMBER=8
[2025-11-06 03:30:39] Starting ATLAS job with PandaID=6864350096
[2025-11-06 03:30:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-06 03:54:06]  *** The last 200 lines of the pilot log: ***
[2025-11-06 03:54:06]  lfn=log.47081490._012496.job.log.tgz.1
[2025-11-06 03:54:06]  mtime=0
[2025-11-06 03:54:06]  protocol_id=None
[2025-11-06 03:54:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-11-06 03:54:06]  replicas=None
[2025-11-06 03:54:06]  scope=mc23_13p6TeV
[2025-11-06 03:54:06]  status=None
[2025-11-06 03:54:06]  status_code=0
[2025-11-06 03:54:06]  storage_token=
[2025-11-06 03:54:06]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6864350096/log.47081490._012496.job.log.tgz.1
[2025-11-06 03:54:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/77/log.47081490._012496.job.log.tgz.1
[2025-11-06 03:54:06]  workdir=None
[2025-11-06 03:54:06] ]
[2025-11-06 03:54:06] 2025-11-06 10:53:30,013 | INFO     | transferring file log.47081490._012496.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6864350096/log.47081490._012496.job.log.tgz.1 to /var/lib/boinc
[2025-11-06 03:54:06] 2025-11-06 10:53:30,013 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6864350096/log.47081490._012496.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.470814
[2025-11-06 03:54:06] 2025-11-06 10:53:30,020 | INFO     | adding to output.list: log.47081490._012496.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/77/log.47081490._012496.job.log.tg
[2025-11-06 03:54:06] 2025-11-06 10:53:30,021 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-11-06 03:54:06] 2025-11-06 10:53:30,021 | INFO     | summary of transferred files:
[2025-11-06 03:54:06] 2025-11-06 10:53:30,021 | INFO     |  -- lfn=log.47081490._012496.job.log.tgz.1, status_code=0, status=transferred
[2025-11-06 03:54:06] 2025-11-06 10:53:30,021 | INFO     | stage-out finished correctly
[2025-11-06 03:54:06] 2025-11-06 10:53:31,230 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-06 03:54:06] 2025-11-06 10:53:31,548 | INFO     | time since job start (1367s) is within the limit (172800.0s)
[2025-11-06 03:54:06] 2025-11-06 10:53:32,406 | WARNING  | process 729780 can no longer be monitored (due to stat problems) - aborting
[2025-11-06 03:54:06] 2025-11-06 10:53:32,406 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6864350096/memory_monitor_summary.json (trf name=prmon)
[2025-11-06 03:54:06] 2025-11-06 10:53:32,438 | INFO     | number of running child processes to parent process 729780: 1
[2025-11-06 03:54:06] 2025-11-06 10:53:32,438 | INFO     | maximum number of monitored processes: 6
[2025-11-06 03:54:06] 2025-11-06 10:53:32,749 | INFO     | job 6864350096 has state=finished
[2025-11-06 03:54:06] 2025-11-06 10:53:32,749 | INFO     | preparing for final server update for job 6864350096 in state='finished'
[2025-11-06 03:54:06] 2025-11-06 10:53:32,749 | INFO     | this job has now completed (state=finished)
[2025-11-06 03:54:06] 2025-11-06 10:53:32,749 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-06 03:54:06] 2025-11-06 10:53:32,749 | INFO     | log transfer has been attempted: DONE
[2025-11-06 03:54:06] 2025-11-06 10:53:32,749 | INFO     | job 6864350096 has finished - writing final server update
[2025-11-06 03:54:06] 2025-11-06 10:53:32,749 | INFO     | total number of processed events: 400 (read)
[2025-11-06 03:54:06] 2025-11-06 10:53:32,750 | INFO     | executing command: lscpu
[2025-11-06 03:54:06] 2025-11-06 10:53:32,762 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-06 03:54:06] 2025-11-06 10:53:33,553 | INFO     | time since job start (1369s) is within the limit (172800.0s)
[2025-11-06 03:54:06] 2025-11-06 10:53:34,143 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-06 03:54:06] 2025-11-06 10:53:34,144 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3172.264687500001
[2025-11-06 03:54:06] 2025-11-06 10:53:34,146 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6864350096/memory_monitor_summary.json (trf name=prmon)
[2025-11-06 03:54:06] 2025-11-06 10:53:34,146 | INFO     | extracted standard info from prmon json
[2025-11-06 03:54:06] 2025-11-06 10:53:34,146 | INFO     | extracted standard memory fields from prmon json
[2025-11-06 03:54:06] 2025-11-06 10:53:34,146 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-06 03:54:06] 2025-11-06 10:53:34,146 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-06 03:54:06] 2025-11-06 10:53:34,146 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-06 03:54:06] 2025-11-06 10:53:34,146 | INFO     | fitting pss+swap vs Time
[2025-11-06 03:54:06] 2025-11-06 10:53:34,146 | INFO     | sum of square deviations: 1265140.0
[2025-11-06 03:54:06] 2025-11-06 10:53:34,146 | INFO     | sum of deviations: 22174232.0
[2025-11-06 03:54:06] 2025-11-06 10:53:34,146 | INFO     | mean x: 1762425823.5
[2025-11-06 03:54:06] 2025-11-06 10:53:34,146 | INFO     | mean y: 2711015.75
[2025-11-06 03:54:06] 2025-11-06 10:53:34,147 | INFO     | -- intersect: -30887498046.55145
[2025-11-06 03:54:06] 2025-11-06 10:53:34,147 | INFO     | intersect: -30887498046.55145
[2025-11-06 03:54:06] 2025-11-06 10:53:34,147 | INFO     | chi2: 1.5383221462149527e-05
[2025-11-06 03:54:06] 2025-11-06 10:53:34,147 | INFO     | -- intersect: -30887498046.55145
[2025-11-06 03:54:06] 2025-11-06 10:53:34,147 | INFO     | current memory leak: 17.53 B/s (using 16 data points, chi2=0.00)
[2025-11-06 03:54:06] 2025-11-06 10:53:34,147 | INFO     | could have reported an average CPU frequency of 4066 MHz (4 samples)
[2025-11-06 03:54:06] 2025-11-06 10:53:34,147 | INFO     | ..............................
[2025-11-06 03:54:06] 2025-11-06 10:53:34,147 | INFO     | . Timing measurements:
[2025-11-06 03:54:06] 2025-11-06 10:53:34,147 | INFO     | . get job = 0 s
[2025-11-06 03:54:06] 2025-11-06 10:53:34,147 | INFO     | . initial setup = 2 s
[2025-11-06 03:54:06] 2025-11-06 10:53:34,147 | INFO     | . payload setup = 2 s
[2025-11-06 03:54:06] 2025-11-06 10:53:34,147 | INFO     | . stage-in = 0 s
[2025-11-06 03:54:06] 2025-11-06 10:53:34,147 | INFO     | . payload execution = 1346 s
[2025-11-06 03:54:06] 2025-11-06 10:53:34,147 | INFO     | . stage-out = 0 s
[2025-11-06 03:54:06] 2025-11-06 10:53:34,147 | INFO     | . log creation = 0 s
[2025-11-06 03:54:06] 2025-11-06 10:53:34,147 | INFO     | ..............................
[2025-11-06 03:54:06] 2025-11-06 10:53:34,168 | INFO     | 
[2025-11-06 03:54:06] 2025-11-06 10:53:34,168 | INFO     | job summary report
[2025-11-06 03:54:06] 2025-11-06 10:53:34,168 | INFO     | --------------------------------------------------
[2025-11-06 03:54:06] 2025-11-06 10:53:34,168 | INFO     | PanDA job id: 6864350096
[2025-11-06 03:54:06] 2025-11-06 10:53:34,168 | INFO     | task id: 47081490
[2025-11-06 03:54:06] 2025-11-06 10:53:34,168 | INFO     | errors: (none)
[2025-11-06 03:54:06] 2025-11-06 10:53:34,168 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-06 03:54:06] 2025-11-06 10:53:34,168 | INFO     | pilot state: finished 
[2025-11-06 03:54:06] 2025-11-06 10:53:34,168 | INFO     | transexitcode: 0
[2025-11-06 03:54:06] 2025-11-06 10:53:34,168 | INFO     | exeerrorcode: 0
[2025-11-06 03:54:06] 2025-11-06 10:53:34,169 | INFO     | exeerrordiag: 
[2025-11-06 03:54:06] 2025-11-06 10:53:34,169 | INFO     | exitcode: 0
[2025-11-06 03:54:06] 2025-11-06 10:53:34,169 | INFO     | exitmsg: OK
[2025-11-06 03:54:06] 2025-11-06 10:53:34,169 | INFO     | cpuconsumptiontime: 9798 s
[2025-11-06 03:54:06] 2025-11-06 10:53:34,169 | INFO     | nevents: 400
[2025-11-06 03:54:06] 2025-11-06 10:53:34,169 | INFO     | neventsw: 0
[2025-11-06 03:54:06] 2025-11-06 10:53:34,169 | INFO     | pid: 729780
[2025-11-06 03:54:06] 2025-11-06 10:53:34,169 | INFO     | pgrp: 729780
[2025-11-06 03:54:06] 2025-11-06 10:53:34,169 | INFO     | corecount: 8
[2025-11-06 03:54:06] 2025-11-06 10:53:34,169 | INFO     | event service: False
[2025-11-06 03:54:06] 2025-11-06 10:53:34,169 | INFO     | sizes: {0: 2348893, 2: 2349155, 11: 2349183, 1353: 2382926, 1355: 2382926, 1358: 2383120}
[2025-11-06 03:54:06] 2025-11-06 10:53:34,169 | INFO     | --------------------------------------------------
[2025-11-06 03:54:06] 2025-11-06 10:53:34,169 | INFO     | 
[2025-11-06 03:54:06] 2025-11-06 10:53:34,169 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-11-06 03:54:06] 2025-11-06 10:53:34,177 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,177 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,177 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,177 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,177 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,177 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,177 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,177 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,177 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,177 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,177 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,177 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,177 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,178 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,178 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,178 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,178 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,178 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-06 03:54:06] 2025-11-06 10:53:34,178 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,178 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-06 03:54:06] 2025-11-06 10:53:34,178 | INFO     | job 6864350096 has completed (purged errors)
[2025-11-06 03:54:06] 2025-11-06 10:53:34,178 | INFO     | overall cleanup function is called
[2025-11-06 03:54:06] 2025-11-06 10:53:35,184 | INFO     | --- collectZombieJob: --- 10, [729780]
[2025-11-06 03:54:06] 2025-11-06 10:53:35,184 | INFO     | zombie collector waiting for pid 729780
[2025-11-06 03:54:06] 2025-11-06 10:53:35,184 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-06 03:54:06] 2025-11-06 10:53:35,184 | INFO     | collected zombie processes
[2025-11-06 03:54:06] 2025-11-06 10:53:35,184 | INFO     | will attempt to kill all subprocesses of pid=729780
[2025-11-06 03:54:06] 2025-11-06 10:53:35,217 | INFO     | process IDs to be killed: [729780] (in reverse order)
[2025-11-06 03:54:06] 2025-11-06 10:53:35,238 | WARNING  | found no corresponding commands to process id(s)
[2025-11-06 03:54:06] 2025-11-06 10:53:35,238 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-06 03:54:06] 2025-11-06 10:53:35,239 | INFO     | did not find any defunct processes belonging to 729780
[2025-11-06 03:54:06] 2025-11-06 10:53:35,240 | INFO     | did not find any defunct processes belonging to 729780
[2025-11-06 03:54:06] 2025-11-06 10:53:35,240 | INFO     | ready for new job
[2025-11-06 03:54:06] 2025-11-06 10:53:35,240 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-06 03:54:06] 2025-11-06 10:53:35,241 | INFO     | ***************************************
[2025-11-06 03:54:06] 2025-11-06 10:53:35,241 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-11-06 03:54:06] 2025-11-06 10:53:35,241 | INFO     | ***************************************
[2025-11-06 03:54:06] 2025-11-06 10:53:35,241 | INFO     | 
[2025-11-06 03:54:06] 2025-11-06 10:53:35,241 | INFO     | architecture information:
[2025-11-06 03:54:06] 2025-11-06 10:53:35,242 | INFO     | executing command: cat /etc/os-release
[2025-11-06 03:54:06] 2025-11-06 10:53:35,247 | INFO     | cat /etc/os-release:
[2025-11-06 03:54:06] NAME="CentOS Linux"
[2025-11-06 03:54:06] VERSION="7 (Core)"
[2025-11-06 03:54:06] ID="centos"
[2025-11-06 03:54:06] ID_LIKE="rhel fedora"
[2025-11-06 03:54:06] VERSION_ID="7"
[2025-11-06 03:54:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-06 03:54:06] ANSI_COLOR="0;31"
[2025-11-06 03:54:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-06 03:54:06] HOME_URL="https://www.centos.org/"
[2025-11-06 03:54:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-06 03:54:06] 
[2025-11-06 03:54:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-06 03:54:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-06 03:54:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-06 03:54:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-06 03:54:06] 
[2025-11-06 03:54:06] 2025-11-06 10:53:35,248 | INFO     | ***************************************
[2025-11-06 03:54:06] 2025-11-06 10:53:35,750 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-11-06 03:54:06] 2025-11-06 10:53:35,757 | INFO     | sufficient remaining disk space (679164772352 B)
[2025-11-06 03:54:06] 2025-11-06 10:53:35,757 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-06 03:54:06] 2025-11-06 10:53:35,757 | INFO     | current server update state: UPDATING_FINAL
[2025-11-06 03:54:06] 2025-11-06 10:53:35,757 | INFO     | update_server=False
[2025-11-06 03:54:06] 2025-11-06 10:53:35,757 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-06 03:54:06] 2025-11-06 10:53:35,757 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-06 03:54:06] 2025-11-06 10:53:35,757 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-06 03:54:06] 2025-11-06 10:53:35,814 | INFO     | job.realtimelogging is not enabled
[2025-11-06 03:54:06] 2025-11-06 10:53:35,945 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-06 03:54:06] 2025-11-06 10:53:35,946 | INFO     | aborting loop
[2025-11-06 03:54:06] 2025-11-06 10:53:36,304 | INFO     | all job control threads have been joined
[2025-11-06 03:54:06] 2025-11-06 10:53:36,762 | INFO     | [job] retrieve thread has finished
[2025-11-06 03:54:06] 2025-11-06 10:53:36,762 | INFO     | [job] queue monitor thread has finished
[2025-11-06 03:54:06] 2025-11-06 10:53:36,806 | INFO     | [payload] validate_post thread has finished
[2025-11-06 03:54:06] 2025-11-06 10:53:36,819 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-06 03:54:06] 2025-11-06 10:53:36,833 | INFO     | all data control threads have been joined
[2025-11-06 03:54:06] 2025-11-06 10:53:36,951 | INFO     | [job] job monitor thread has finished
[2025-11-06 03:54:06] 2025-11-06 10:53:37,219 | INFO     | all payload control threads have been joined
[2025-11-06 03:54:06] 2025-11-06 10:53:37,252 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-06 03:54:06] 2025-11-06 10:53:37,309 | INFO     | [job] control thread has finished
[2025-11-06 03:54:06] 2025-11-06 10:53:37,571 | INFO     | [payload] failed_post thread has finished
[2025-11-06 03:54:06] 2025-11-06 10:53:37,695 | INFO     | [job] validate thread has finished
[2025-11-06 03:54:06] 2025-11-06 10:53:37,762 | INFO     | [data] copytool_out thread has finished
[2025-11-06 03:54:06] 2025-11-06 10:53:37,838 | INFO     | [data] control thread has finished
[2025-11-06 03:54:06] 2025-11-06 10:53:37,840 | INFO     | [job] create_data_payload thread has finished
[2025-11-06 03:54:06] 2025-11-06 10:53:37,859 | INFO     | [payload] validate_pre thread has finished
[2025-11-06 03:54:06] 2025-11-06 10:53:37,885 | INFO     | [payload] execute_payloads thread has finished
[2025-11-06 03:54:06] 2025-11-06 10:53:37,907 | INFO     | [data] copytool_in thread has finished
[2025-11-06 03:54:06] 2025-11-06 10:53:38,224 | INFO     | [payload] control thread has finished
[2025-11-06 03:54:06] 2025-11-06 10:53:41,257 | INFO     | [data] queue_monitor thread has finished
[2025-11-06 03:54:06] 2025-11-06 10:53:46,179 | INFO     | [monitor] cgroup control has ended
[2025-11-06 03:54:06] 2025-11-06 10:53:47,402 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123720168625984)>', '<ExcThread(monitor, started 123719798228736)>']
[2025-11-06 03:54:06] 2025-11-06 10:53:52,404 | INFO     | all workflow threads have been joined
[2025-11-06 03:54:06] 2025-11-06 10:53:52,404 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-06 03:54:06] 2025-11-06 10:53:52,404 | INFO     | traces error code: 0
[2025-11-06 03:54:06] 2025-11-06 10:53:52,404 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-06 03:54:06] 2025-11-06 10:54:06,660 | INFO     | PID=723125 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-06 03:54:06] 2025-11-06 10:54:06,660 | INFO     | found 0 job(s) in 20 queues
[2025-11-06 03:54:06] 2025-11-06 10:54:06,660 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-06 03:54:06] 2025-11-06 10:54:06,661 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-06 03:54:06] 2025-11-06 10:54:06,661 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-06 03:54:06] 2025-11-06 10:54:06,661 | INFO     | [monitor] control thread has ended
[2025-11-06 03:54:06] 2025-11-06 10:54:06,692 [wrapper] ==== pilot stdout END ====
[2025-11-06 03:54:06] 2025-11-06 10:54:06,694 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-06 03:54:06] 2025-11-06 10:54:06,695 [wrapper] pilotpid: 723125
[2025-11-06 03:54:06] 2025-11-06 10:54:06,696 [wrapper] Pilot exit status: 0
[2025-11-06 03:54:06] 2025-11-06 10:54:06,699 [wrapper] pandaids: 6864350096
[2025-11-06 03:54:06] 2025-11-06 10:54:06,712 [wrapper] cleanup supervisor_pilot  736527 723126
[2025-11-06 03:54:06] 2025-11-06 10:54:06,713 [wrapper] Test setup, not cleaning
[2025-11-06 03:54:06] 2025-11-06 10:54:06,714 [wrapper] apfmon messages muted
[2025-11-06 03:54:06] 2025-11-06 10:54:06,715 [wrapper] ==== wrapper stdout END ====
[2025-11-06 03:54:06] 2025-11-06 10:54:06,716 [wrapper] ==== wrapper stderr END ====
[2025-11-06 03:54:06]  *** Error codes and diagnostics ***
[2025-11-06 03:54:06]     "exeErrorCode": 0,
[2025-11-06 03:54:06]     "exeErrorDiag": "",
[2025-11-06 03:54:06]     "pilotErrorCode": 0,
[2025-11-06 03:54:06]     "pilotErrorDiag": "",
[2025-11-06 03:54:06]  *** Listing of results directory ***
[2025-11-06 03:54:06] total 384588
[2025-11-06 03:54:06] -rw-r--r-- 1 boinc boinc    557409 Oct 29 02:16 pilot3.tar.gz
[2025-11-06 03:54:06] -rw-r--r-- 1 boinc boinc      5112 Oct 29 02:25 queuedata.json
[2025-11-06 03:54:06] -rwx------ 1 boinc boinc     36292 Oct 29 02:27 runpilot2-wrapper.sh
[2025-11-06 03:54:06] -rw-r--r-- 1 boinc boinc       100 Nov  6 03:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-06 03:54:06] -rwxr-xr-x 1 boinc boinc      7986 Nov  6 03:30 run_atlas
[2025-11-06 03:54:06] -rw-r--r-- 1 boinc boinc       105 Nov  6 03:30 job.xml
[2025-11-06 03:54:06] -rw-r--r-- 2 boinc boinc 215619037 Nov  6 03:30 EVNT.47081487._000491.pool.root.1
[2025-11-06 03:54:06] -rw-r--r-- 2 boinc boinc     15120 Nov  6 03:30 start_atlas.sh
[2025-11-06 03:54:06] drwxrwx--x 2 boinc boinc      4096 Nov  6 03:30 shared
[2025-11-06 03:54:06] -rw-r--r-- 2 boinc boinc    569676 Nov  6 03:30 input.tar.gz
[2025-11-06 03:54:06] -rw-r--r-- 1 boinc boinc      9912 Nov  6 03:30 init_data.xml
[2025-11-06 03:54:06] -rw-r--r-- 1 boinc boinc         0 Nov  6 03:30 boinc_lockfile
[2025-11-06 03:54:06] -rw-r--r-- 1 boinc boinc      2526 Nov  6 03:30 pandaJob.out
[2025-11-06 03:54:06] -rw------- 1 boinc boinc    985775 Nov  6 03:30 agis_schedconf.cvmfs.json
[2025-11-06 03:54:06] -rw------- 1 boinc boinc   1560632 Nov  6 03:30 agis_ddmendpoints.agis.ALL.json
[2025-11-06 03:54:06] drwx------ 5 boinc boinc      4096 Nov  6 03:30 pilot3
[2025-11-06 03:54:06] -rw------- 1 boinc boinc 173230805 Nov  6 03:53 HITS.47081490._012496.pool.root.1
[2025-11-06 03:54:06] -rw-r--r-- 1 boinc boinc       528 Nov  6 03:53 boinc_task_state.xml
[2025-11-06 03:54:06] -rw------- 1 boinc boinc      1013 Nov  6 03:53 memory_monitor_summary.json
[2025-11-06 03:54:06] -rw------- 1 boinc boinc    284731 Nov  6 03:53 log.47081490._012496.job.log.tgz.1
[2025-11-06 03:54:06] -rw------- 1 boinc boinc      7717 Nov  6 03:53 heartbeat.json
[2025-11-06 03:54:06] -rw-r--r-- 1 boinc boinc        26 Nov  6 03:53 wrapper_checkpoint.txt
[2025-11-06 03:54:06] -rw-r--r-- 1 boinc boinc      8192 Nov  6 03:53 boinc_mmap_file
[2025-11-06 03:54:06] -rw------- 1 boinc boinc        95 Nov  6 03:54 pilot_heartbeat.json
[2025-11-06 03:54:06] -rw------- 1 boinc boinc       746 Nov  6 03:54 pilotlog.txt
[2025-11-06 03:54:06] -rw------- 1 boinc boinc    243700 Nov  6 03:54 log.47081490._012496.job.log.1
[2025-11-06 03:54:06] -rw------- 1 boinc boinc       357 Nov  6 03:54 output.list
[2025-11-06 03:54:06] -rw-r--r-- 1 boinc boinc       620 Nov  6 03:54 runtime_log
[2025-11-06 03:54:06] -rw------- 1 boinc boinc    542720 Nov  6 03:54 result.tar.gz
[2025-11-06 03:54:06] -rw------- 1 boinc boinc       648 Nov  6 03:54 SveMDmdhGY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmgGODm5an1zm.diag
[2025-11-06 03:54:06] -rw-r--r-- 1 boinc boinc      8786 Nov  6 03:54 runtime_log.err
[2025-11-06 03:54:06] -rw-r--r-- 1 boinc boinc     21681 Nov  6 03:54 stderr.txt
[2025-11-06 03:54:06] HITS file was successfully produced:
[2025-11-06 03:54:06] -rw------- 1 boinc boinc 173230805 Nov  6 03:53 shared/HITS.pool.root.1
[2025-11-06 03:54:06]  *** Contents of shared directory: ***
[2025-11-06 03:54:06] total 380856
[2025-11-06 03:54:06] -rw-r--r-- 2 boinc boinc 215619037 Nov  6 03:30 ATLAS.root_0
[2025-11-06 03:54:06] -rw-r--r-- 2 boinc boinc     15120 Nov  6 03:30 start_atlas.sh
[2025-11-06 03:54:06] -rw-r--r-- 2 boinc boinc    569676 Nov  6 03:30 input.tar.gz
[2025-11-06 03:54:06] -rw------- 1 boinc boinc 173230805 Nov  6 03:53 HITS.pool.root.1
[2025-11-06 03:54:06] -rw------- 1 boinc boinc    542720 Nov  6 03:54 result.tar.gz
03:54:08 (719268): run_atlas exited; CPU time 9802.396024
03:54:08 (719268): called boinc_finish(0)

</stderr_txt>
]]>

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