Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
02:34:47 (637929): wrapper (7.7.26015): starting
02:34:47 (637929): wrapper: running run_atlas (--nthreads 8)
[2025-11-06 02:34:47] Arguments: --nthreads 8
[2025-11-06 02:34:47] Threads: 8
[2025-11-06 02:34:47] Checking for CVMFS
[2025-11-06 02:34:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-06 02:34:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-06 02:34:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-06 02:34:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-06 02:34:47] 2.13.3.0 559165 52 47752 152532 0 188 1673503 4096000 922 130560 0 222342 99.989 5453 588 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-06 02:34:47] CVMFS is ok
[2025-11-06 02:34:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-06 02:34:47] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-06 02:34:47] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-06 02:34:47] Further information can be found at the LHC@home message board.
[2025-11-06 02:34:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-06 02:34:47] Checking for apptainer binary...
[2025-11-06 02:34:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-06 02:34:47] Running /usr/bin/apptainer --version
[2025-11-06 02:34:47] apptainer version 1.4.4
[2025-11-06 02:34:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-06 02:34:47] garage
[2025-11-06 02:34:47] apptainer works
[2025-11-06 02:34:47] Set ATHENA_PROC_NUMBER=8
[2025-11-06 02:34:47] Set ATHENA_CORE_NUMBER=8
[2025-11-06 02:34:47] Starting ATLAS job with PandaID=6873882135
[2025-11-06 02:34:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-06 03:05:15]  *** The last 200 lines of the pilot log: ***
[2025-11-06 03:05:15]  scope=mc23_13p6TeV
[2025-11-06 03:05:15]  status=None
[2025-11-06 03:05:15]  status_code=0
[2025-11-06 03:05:15]  storage_token=
[2025-11-06 03:05:15]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6873882135/log.47240594._000219.job.log.tgz.1
[2025-11-06 03:05:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f4/70/log.47240594._000219.job.log.tgz.1
[2025-11-06 03:05:15]  workdir=None
[2025-11-06 03:05:15] ]
[2025-11-06 03:05:15] 2025-11-06 10:04:36,513 | INFO     | transferring file log.47240594._000219.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6873882135/log.47240594._000219.job.log.tgz.1 to /var/lib/boinc
[2025-11-06 03:05:15] 2025-11-06 10:04:36,513 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6873882135/log.47240594._000219.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.472405
[2025-11-06 03:05:15] 2025-11-06 10:04:36,522 | INFO     | adding to output.list: log.47240594._000219.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f4/70/log.47240594._000219.job.log.tg
[2025-11-06 03:05:15] 2025-11-06 10:04:36,522 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-11-06 03:05:15] 2025-11-06 10:04:36,522 | INFO     | summary of transferred files:
[2025-11-06 03:05:15] 2025-11-06 10:04:36,522 | INFO     |  -- lfn=log.47240594._000219.job.log.tgz.1, status_code=0, status=transferred
[2025-11-06 03:05:15] 2025-11-06 10:04:36,522 | INFO     | stage-out finished correctly
[2025-11-06 03:05:15] 2025-11-06 10:04:36,522 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-06 03:05:15] 2025-11-06 10:04:36,735 | INFO     | time since job start (1783s) is within the limit (172800.0s)
[2025-11-06 03:05:15] 2025-11-06 10:04:38,563 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-06 03:05:15] 2025-11-06 10:04:38,584 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-06 03:05:15] 2025-11-06 10:04:38,585 | INFO     | job 6873882135 has state=finished
[2025-11-06 03:05:15] 2025-11-06 10:04:38,585 | INFO     | preparing for final server update for job 6873882135 in state='finished'
[2025-11-06 03:05:15] 2025-11-06 10:04:38,740 | INFO     | time since job start (1785s) is within the limit (172800.0s)
[2025-11-06 03:05:15] 2025-11-06 10:04:38,847 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-11-06 03:05:15] 2025-11-06 10:04:38,847 | INFO     | this job has now completed (state=finished)
[2025-11-06 03:05:15] 2025-11-06 10:04:38,847 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-06 03:05:15] 2025-11-06 10:04:38,847 | INFO     | log transfer has been attempted: DONE
[2025-11-06 03:05:15] 2025-11-06 10:04:38,847 | INFO     | job 6873882135 has finished - writing final server update
[2025-11-06 03:05:15] 2025-11-06 10:04:38,847 | INFO     | total number of processed events: 400 (read)
[2025-11-06 03:05:15] 2025-11-06 10:04:38,848 | INFO     | executing command: lscpu
[2025-11-06 03:05:15] 2025-11-06 10:04:38,861 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-06 03:05:15] 2025-11-06 10:04:40,746 | INFO     | time since job start (1787s) is within the limit (172800.0s)
[2025-11-06 03:05:15] 2025-11-06 10:04:42,055 | WARNING  | process 648437 can no longer be monitored (due to stat problems) - aborting
[2025-11-06 03:05:15] 2025-11-06 10:04:42,055 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6873882135/memory_monitor_summary.json (trf name=prmon)
[2025-11-06 03:05:15] 2025-11-06 10:04:42,092 | INFO     | number of running child processes to parent process 648437: 1
[2025-11-06 03:05:15] 2025-11-06 10:04:42,092 | INFO     | maximum number of monitored processes: 6
[2025-11-06 03:05:15] 2025-11-06 10:04:42,751 | INFO     | time since job start (1789s) is within the limit (172800.0s)
[2025-11-06 03:05:15] 2025-11-06 10:04:44,568 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-06 03:05:15] 2025-11-06 10:04:44,570 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3801.1114687499994
[2025-11-06 03:05:15] 2025-11-06 10:04:44,571 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6873882135/memory_monitor_summary.json (trf name=prmon)
[2025-11-06 03:05:15] 2025-11-06 10:04:44,571 | INFO     | extracted standard info from prmon json
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | extracted standard memory fields from prmon json
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | fitting pss+swap vs Time
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | sum of square deviations: 3294945.5
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | sum of deviations: 69738433.00000003
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | mean x: 1762422655.5
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | mean y: 2767178.727272727
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | intersect: -37299395870.1817
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | chi2: 0.007088845368102931
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | current memory leak: 21.17 B/s (using 22 data points, chi2=0.01)
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | could have reported an average CPU frequency of 4051 MHz (4 samples)
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | ..............................
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | . Timing measurements:
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | . get job = 0 s
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | . initial setup = 2 s
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | . payload setup = 2 s
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | . stage-in = 0 s
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | . payload execution = 1764 s
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | . stage-out = 0 s
[2025-11-06 03:05:15] 2025-11-06 10:04:44,572 | INFO     | . log creation = 0 s
[2025-11-06 03:05:15] 2025-11-06 10:04:44,573 | INFO     | ..............................
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | 
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | job summary report
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | --------------------------------------------------
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | PanDA job id: 6873882135
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | task id: 47240594
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | errors: (none)
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | pilot state: finished 
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | transexitcode: 0
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | exeerrorcode: 0
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | exeerrordiag: 
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | exitcode: 0
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | exitmsg: OK
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | cpuconsumptiontime: 12814 s
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | nevents: 400
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | neventsw: 0
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | pid: 648437
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | pgrp: 648437
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | corecount: 8
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | event service: False
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | sizes: {0: 2348988, 2: 2349250, 11: 2349278, 1770: 2374135, 1771: 2383147, 1773: 2383203, 1779: 2383525}
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | --------------------------------------------------
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | 
[2025-11-06 03:05:15] 2025-11-06 10:04:44,595 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-11-06 03:05:15] 2025-11-06 10:04:44,604 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,604 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,604 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,604 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,604 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | job 6873882135 has completed (purged errors)
[2025-11-06 03:05:15] 2025-11-06 10:04:44,605 | INFO     | overall cleanup function is called
[2025-11-06 03:05:15] 2025-11-06 10:04:45,611 | INFO     | --- collectZombieJob: --- 10, [648437]
[2025-11-06 03:05:15] 2025-11-06 10:04:45,611 | INFO     | zombie collector waiting for pid 648437
[2025-11-06 03:05:15] 2025-11-06 10:04:45,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-06 03:05:15] 2025-11-06 10:04:45,611 | INFO     | collected zombie processes
[2025-11-06 03:05:15] 2025-11-06 10:04:45,611 | INFO     | will attempt to kill all subprocesses of pid=648437
[2025-11-06 03:05:15] 2025-11-06 10:04:45,651 | INFO     | process IDs to be killed: [648437] (in reverse order)
[2025-11-06 03:05:15] 2025-11-06 10:04:45,673 | WARNING  | found no corresponding commands to process id(s)
[2025-11-06 03:05:15] 2025-11-06 10:04:45,673 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-06 03:05:15] 2025-11-06 10:04:45,674 | INFO     | did not find any defunct processes belonging to 648437
[2025-11-06 03:05:15] 2025-11-06 10:04:45,675 | INFO     | did not find any defunct processes belonging to 648437
[2025-11-06 03:05:15] 2025-11-06 10:04:45,676 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-06 03:05:15] 2025-11-06 10:04:45,676 | INFO     | ready for new job
[2025-11-06 03:05:15] 2025-11-06 10:04:45,676 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-06 03:05:15] 2025-11-06 10:04:45,676 | INFO     | ***************************************
[2025-11-06 03:05:15] 2025-11-06 10:04:45,676 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-06 03:05:15] 2025-11-06 10:04:45,676 | INFO     | ***************************************
[2025-11-06 03:05:15] 2025-11-06 10:04:45,676 | INFO     | 
[2025-11-06 03:05:15] 2025-11-06 10:04:45,677 | INFO     | architecture information:
[2025-11-06 03:05:15] 2025-11-06 10:04:45,677 | INFO     | executing command: cat /etc/os-release
[2025-11-06 03:05:15] 2025-11-06 10:04:45,683 | INFO     | cat /etc/os-release:
[2025-11-06 03:05:15] NAME="CentOS Linux"
[2025-11-06 03:05:15] VERSION="7 (Core)"
[2025-11-06 03:05:15] ID="centos"
[2025-11-06 03:05:15] ID_LIKE="rhel fedora"
[2025-11-06 03:05:15] VERSION_ID="7"
[2025-11-06 03:05:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-06 03:05:15] ANSI_COLOR="0;31"
[2025-11-06 03:05:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-06 03:05:15] HOME_URL="https://www.centos.org/"
[2025-11-06 03:05:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-06 03:05:15] 
[2025-11-06 03:05:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-06 03:05:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-06 03:05:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-06 03:05:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-06 03:05:15] 
[2025-11-06 03:05:15] 2025-11-06 10:04:45,683 | INFO     | ***************************************
[2025-11-06 03:05:15] 2025-11-06 10:04:46,186 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-11-06 03:05:15] 2025-11-06 10:04:46,194 | INFO     | sufficient remaining disk space (678087884800 B)
[2025-11-06 03:05:15] 2025-11-06 10:04:46,194 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-06 03:05:15] 2025-11-06 10:04:46,194 | INFO     | current server update state: UPDATING_FINAL
[2025-11-06 03:05:15] 2025-11-06 10:04:46,194 | INFO     | update_server=False
[2025-11-06 03:05:15] 2025-11-06 10:04:46,194 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-06 03:05:15] 2025-11-06 10:04:46,194 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-06 03:05:15] 2025-11-06 10:04:46,194 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-06 03:05:15] 2025-11-06 10:04:46,194 | INFO     | aborting loop
[2025-11-06 03:05:15] 2025-11-06 10:04:46,224 | INFO     | all data control threads have been joined
[2025-11-06 03:05:15] 2025-11-06 10:04:46,509 | INFO     | all job control threads have been joined
[2025-11-06 03:05:15] 2025-11-06 10:04:47,055 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-06 03:05:15] 2025-11-06 10:04:47,199 | INFO     | [job] retrieve thread has finished
[2025-11-06 03:05:15] 2025-11-06 10:04:47,199 | INFO     | [job] queue monitor thread has finished
[2025-11-06 03:05:15] 2025-11-06 10:04:47,199 | INFO     | [job] job monitor thread has finished
[2025-11-06 03:05:15] 2025-11-06 10:04:47,229 | INFO     | [data] control thread has finished
[2025-11-06 03:05:15] 2025-11-06 10:04:47,233 | INFO     | [data] copytool_in thread has finished
[2025-11-06 03:05:15] 2025-11-06 10:04:47,352 | INFO     | all payload control threads have been joined
[2025-11-06 03:05:15] 2025-11-06 10:04:47,514 | INFO     | [job] control thread has finished
[2025-11-06 03:05:15] 2025-11-06 10:04:47,792 | INFO     | [payload] failed_post thread has finished
[2025-11-06 03:05:15] 2025-11-06 10:04:47,958 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-06 03:05:15] 2025-11-06 10:04:48,306 | INFO     | [payload] validate_post thread has finished
[2025-11-06 03:05:15] 2025-11-06 10:04:48,356 | INFO     | [payload] control thread has finished
[2025-11-06 03:05:15] 2025-11-06 10:04:48,529 | INFO     | [job] validate thread has finished
[2025-11-06 03:05:15] 2025-11-06 10:04:48,605 | INFO     | [payload] execute_payloads thread has finished
[2025-11-06 03:05:15] 2025-11-06 10:04:48,605 | INFO     | [job] create_data_payload thread has finished
[2025-11-06 03:05:15] 2025-11-06 10:04:48,626 | INFO     | [payload] validate_pre thread has finished
[2025-11-06 03:05:15] 2025-11-06 10:04:49,061 | INFO     | [data] copytool_out thread has finished
[2025-11-06 03:05:15] 2025-11-06 10:04:49,098 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-06 03:05:15] 2025-11-06 10:04:50,519 [wrapper] supervise_pilot (15 min periods counter: 3)
[2025-11-06 03:05:15] 2025-11-06 10:04:53,103 | INFO     | [data] queue_monitor thread has finished
[2025-11-06 03:05:15] 2025-11-06 10:04:54,979 | INFO     | [monitor] cgroup control has ended
[2025-11-06 03:05:15] 2025-11-06 10:04:55,663 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125720674125632)>', '<ExcThread(monitor, started 125720302978816)>']
[2025-11-06 03:05:15] 2025-11-06 10:05:00,672 | INFO     | all workflow threads have been joined
[2025-11-06 03:05:15] 2025-11-06 10:05:00,672 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-06 03:05:15] 2025-11-06 10:05:00,672 | INFO     | traces error code: 0
[2025-11-06 03:05:15] 2025-11-06 10:05:00,672 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-06 03:05:15] 2025-11-06 10:05:15,867 | INFO     | PID=641783 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-06 03:05:15] 2025-11-06 10:05:15,867 | INFO     | .. there are 2 such processes running
[2025-11-06 03:05:15] 2025-11-06 10:05:15,868 | INFO     | found 0 job(s) in 20 queues
[2025-11-06 03:05:15] 2025-11-06 10:05:15,868 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-06 03:05:15] 2025-11-06 10:05:15,868 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-06 03:05:15] 2025-11-06 10:05:15,868 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-06 03:05:15] 2025-11-06 10:05:15,868 | INFO     | [monitor] control thread has ended
[2025-11-06 03:05:15] 2025-11-06 10:05:15,903 [wrapper] ==== pilot stdout END ====
[2025-11-06 03:05:15] 2025-11-06 10:05:15,904 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-06 03:05:15] 2025-11-06 10:05:15,905 [wrapper] pilotpid: 641783
[2025-11-06 03:05:15] 2025-11-06 10:05:15,906 [wrapper] Pilot exit status: 0
[2025-11-06 03:05:15] 2025-11-06 10:05:15,910 [wrapper] pandaids: 6873882135
[2025-11-06 03:05:15] 2025-11-06 10:05:15,924 [wrapper] cleanup supervisor_pilot  679619 641784
[2025-11-06 03:05:15] 2025-11-06 10:05:15,925 [wrapper] Test setup, not cleaning
[2025-11-06 03:05:15] 2025-11-06 10:05:15,926 [wrapper] apfmon messages muted
[2025-11-06 03:05:15] 2025-11-06 10:05:15,927 [wrapper] ==== wrapper stdout END ====
[2025-11-06 03:05:15] 2025-11-06 10:05:15,929 [wrapper] ==== wrapper stderr END ====
[2025-11-06 03:05:15]  *** Error codes and diagnostics ***
[2025-11-06 03:05:15]     "exeErrorCode": 0,
[2025-11-06 03:05:15]     "exeErrorDiag": "",
[2025-11-06 03:05:15]     "pilotErrorCode": 0,
[2025-11-06 03:05:15]     "pilotErrorDiag": "",
[2025-11-06 03:05:15]  *** Listing of results directory ***
[2025-11-06 03:05:15] total 469144
[2025-11-06 03:05:15] -rw-r--r-- 1 boinc boinc      5112 Nov  6 01:41 queuedata.json
[2025-11-06 03:05:15] -rw-r--r-- 1 boinc boinc    576529 Nov  6 01:41 pilot3.tar.gz
[2025-11-06 03:05:15] -rwx------ 1 boinc boinc     36292 Nov  6 01:41 runpilot2-wrapper.sh
[2025-11-06 03:05:15] -rw-r--r-- 1 boinc boinc       100 Nov  6 02:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-06 03:05:15] -rwxr-xr-x 1 boinc boinc      7986 Nov  6 02:34 run_atlas
[2025-11-06 03:05:15] -rw-r--r-- 1 boinc boinc       105 Nov  6 02:34 job.xml
[2025-11-06 03:05:15] -rw-r--r-- 2 boinc boinc     15120 Nov  6 02:34 start_atlas.sh
[2025-11-06 03:05:15] drwxrwx--x 2 boinc boinc      4096 Nov  6 02:34 shared
[2025-11-06 03:05:15] -rw-r--r-- 2 boinc boinc    589951 Nov  6 02:34 input.tar.gz
[2025-11-06 03:05:15] -rw-r--r-- 1 boinc boinc      9912 Nov  6 02:34 init_data.xml
[2025-11-06 03:05:15] -rw-r--r-- 2 boinc boinc 277867438 Nov  6 02:34 EVNT.47240566._000004.pool.root.1
[2025-11-06 03:05:15] -rw-r--r-- 1 boinc boinc         0 Nov  6 02:34 boinc_lockfile
[2025-11-06 03:05:15] -rw-r--r-- 1 boinc boinc      2599 Nov  6 02:34 pandaJob.out
[2025-11-06 03:05:15] -rw------- 1 boinc boinc    985767 Nov  6 02:34 agis_schedconf.cvmfs.json
[2025-11-06 03:05:15] -rw------- 1 boinc boinc   1560632 Nov  6 02:34 agis_ddmendpoints.agis.ALL.json
[2025-11-06 03:05:15] drwx------ 5 boinc boinc      4096 Nov  6 02:34 pilot3
[2025-11-06 03:05:15] -rw-r--r-- 1 boinc boinc       529 Nov  6 03:04 boinc_task_state.xml
[2025-11-06 03:05:15] -rw------- 1 boinc boinc 197397464 Nov  6 03:04 HITS.47240594._000219.pool.root.1
[2025-11-06 03:05:15] -rw------- 1 boinc boinc      1020 Nov  6 03:04 memory_monitor_summary.json
[2025-11-06 03:05:15] -rw------- 1 boinc boinc    290673 Nov  6 03:04 log.47240594._000219.job.log.tgz.1
[2025-11-06 03:05:15] -rw------- 1 boinc boinc      7718 Nov  6 03:04 heartbeat.json
[2025-11-06 03:05:15] -rw-r--r-- 1 boinc boinc      8192 Nov  6 03:04 boinc_mmap_file
[2025-11-06 03:05:15] -rw-r--r-- 1 boinc boinc        27 Nov  6 03:04 wrapper_checkpoint.txt
[2025-11-06 03:05:15] -rw------- 1 boinc boinc       821 Nov  6 03:05 pilotlog.txt
[2025-11-06 03:05:15] -rw------- 1 boinc boinc        95 Nov  6 03:05 pilot_heartbeat.json
[2025-11-06 03:05:15] -rw------- 1 boinc boinc    304180 Nov  6 03:05 log.47240594._000219.job.log.1
[2025-11-06 03:05:15] -rw------- 1 boinc boinc       357 Nov  6 03:05 output.list
[2025-11-06 03:05:15] -rw-r--r-- 1 boinc boinc       620 Nov  6 03:05 runtime_log
[2025-11-06 03:05:15] -rw------- 1 boinc boinc    614400 Nov  6 03:05 result.tar.gz
[2025-11-06 03:05:15] -rw-r--r-- 1 boinc boinc      8786 Nov  6 03:05 runtime_log.err
[2025-11-06 03:05:15] -rw------- 1 boinc boinc       649 Nov  6 03:05 GPiLDm3jAb8n9Rq4apOajLDm4fhM0noT9bVof3QYDmLXqMDmNP6JYm.diag
[2025-11-06 03:05:15] -rw-r--r-- 1 boinc boinc     22336 Nov  6 03:05 stderr.txt
[2025-11-06 03:05:15] HITS file was successfully produced:
[2025-11-06 03:05:15] -rw------- 1 boinc boinc 197397464 Nov  6 03:04 shared/HITS.pool.root.1
[2025-11-06 03:05:15]  *** Contents of shared directory: ***
[2025-11-06 03:05:15] total 465332
[2025-11-06 03:05:15] -rw-r--r-- 2 boinc boinc     15120 Nov  6 02:34 start_atlas.sh
[2025-11-06 03:05:15] -rw-r--r-- 2 boinc boinc    589951 Nov  6 02:34 input.tar.gz
[2025-11-06 03:05:15] -rw-r--r-- 2 boinc boinc 277867438 Nov  6 02:34 ATLAS.root_0
[2025-11-06 03:05:15] -rw------- 1 boinc boinc 197397464 Nov  6 03:04 HITS.pool.root.1
[2025-11-06 03:05:15] -rw------- 1 boinc boinc    614400 Nov  6 03:05 result.tar.gz
03:05:17 (637929): run_atlas exited; CPU time 12820.652535
03:05:17 (637929): called boinc_finish(0)

</stderr_txt>
]]>

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