Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
02:08:27 (596605): wrapper (7.7.26015): starting
02:08:27 (596605): wrapper: running run_atlas (--nthreads 8)
[2025-11-06 02:08:27] Arguments: --nthreads 8
[2025-11-06 02:08:27] Threads: 8
[2025-11-06 02:08:27] Checking for CVMFS
[2025-11-06 02:08:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-06 02:08:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-06 02:08:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-06 02:08:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-06 02:08:27] 2.13.3.0 559165 25 45636 152531 2 56 1668300 4096001 922 130560 0 105443 99.980 4151 568 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-06 02:08:27] CVMFS is ok
[2025-11-06 02:08:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-06 02:08:27] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-06 02:08:27] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-06 02:08:27] Further information can be found at the LHC@home message board.
[2025-11-06 02:08:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-06 02:08:27] Checking for apptainer binary...
[2025-11-06 02:08:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-06 02:08:27] Running /usr/bin/apptainer --version
[2025-11-06 02:08:27] apptainer version 1.4.4
[2025-11-06 02:08:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-06 02:08:28] garage
[2025-11-06 02:08:28] apptainer works
[2025-11-06 02:08:28] Set ATHENA_PROC_NUMBER=8
[2025-11-06 02:08:28] Set ATHENA_CORE_NUMBER=8
[2025-11-06 02:08:28] Starting ATLAS job with PandaID=6873882124
[2025-11-06 02:08:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-06 02:34:42]  *** The last 200 lines of the pilot log: ***
[2025-11-06 02:34:42] ]
[2025-11-06 02:34:42] 2025-11-06 09:33:59,059 | INFO     | transferring file log.47240594._000208.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6873882124/log.47240594._000208.job.log.tgz.1 to /var/lib/boinc
[2025-11-06 02:34:42] 2025-11-06 09:33:59,059 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6873882124/log.47240594._000208.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.472405
[2025-11-06 02:34:42] 2025-11-06 09:33:59,066 | INFO     | adding to output.list: log.47240594._000208.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/af/0d/log.47240594._000208.job.log.tg
[2025-11-06 02:34:42] 2025-11-06 09:33:59,067 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-11-06 02:34:42] 2025-11-06 09:33:59,067 | INFO     | summary of transferred files:
[2025-11-06 02:34:42] 2025-11-06 09:33:59,067 | INFO     |  -- lfn=log.47240594._000208.job.log.tgz.1, status_code=0, status=transferred
[2025-11-06 02:34:42] 2025-11-06 09:33:59,067 | INFO     | stage-out finished correctly
[2025-11-06 02:34:42] 2025-11-06 09:33:59,067 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-06 02:34:42] 2025-11-06 09:33:59,263 | WARNING  | process 607121 can no longer be monitored (due to stat problems) - aborting
[2025-11-06 02:34:42] 2025-11-06 09:33:59,263 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6873882124/memory_monitor_summary.json (trf name=prmon)
[2025-11-06 02:34:42] 2025-11-06 09:33:59,299 | INFO     | number of running child processes to parent process 607121: 1
[2025-11-06 02:34:42] 2025-11-06 09:33:59,299 | INFO     | maximum number of monitored processes: 6
[2025-11-06 02:34:42] 2025-11-06 09:33:59,455 | INFO     | time since job start (1526s) is within the limit (172800.0s)
[2025-11-06 02:34:42] 2025-11-06 09:34:00,505 | INFO     | PID=600467 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-06 02:34:42] 2025-11-06 09:34:00,505 | INFO     | .. there are 2 such processes running
[2025-11-06 02:34:42] 2025-11-06 09:34:01,506 | INFO     | time since job start (1528s) is within the limit (172800.0s)
[2025-11-06 02:34:42] 2025-11-06 09:34:01,802 | INFO     | monitor loop #120: job 0:6873882124 is in state 'finished'
[2025-11-06 02:34:42] 2025-11-06 09:34:01,802 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-06 02:34:42] 2025-11-06 09:34:02,193 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-06 02:34:42] 2025-11-06 09:34:02,215 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-06 02:34:42] 2025-11-06 09:34:02,215 | INFO     | job 6873882124 has state=finished
[2025-11-06 02:34:42] 2025-11-06 09:34:02,215 | INFO     | preparing for final server update for job 6873882124 in state='finished'
[2025-11-06 02:34:42] 2025-11-06 09:34:02,215 | INFO     | this job has now completed (state=finished)
[2025-11-06 02:34:42] 2025-11-06 09:34:02,215 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-06 02:34:42] 2025-11-06 09:34:02,215 | INFO     | log transfer has been attempted: DONE
[2025-11-06 02:34:42] 2025-11-06 09:34:02,215 | INFO     | job 6873882124 has finished - writing final server update
[2025-11-06 02:34:42] 2025-11-06 09:34:02,215 | INFO     | total number of processed events: 400 (read)
[2025-11-06 02:34:42] 2025-11-06 09:34:02,215 | INFO     | executing command: lscpu
[2025-11-06 02:34:42] 2025-11-06 09:34:02,228 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-06 02:34:42] 2025-11-06 09:34:03,511 | INFO     | time since job start (1530s) is within the limit (172800.0s)
[2025-11-06 02:34:42] 2025-11-06 09:34:04,305 | INFO     | monitor loop #121: job 0:6873882124 is in state 'finished'
[2025-11-06 02:34:42] 2025-11-06 09:34:04,305 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-06 02:34:42] 2025-11-06 09:34:05,516 | INFO     | time since job start (1532s) is within the limit (172800.0s)
[2025-11-06 02:34:42] 2025-11-06 09:34:06,808 | INFO     | monitor loop #122: job 0:6873882124 is in state 'finished'
[2025-11-06 02:34:42] 2025-11-06 09:34:06,808 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-06 02:34:42] 2025-11-06 09:34:07,521 | INFO     | time since job start (1534s) is within the limit (172800.0s)
[2025-11-06 02:34:42] 2025-11-06 09:34:08,773 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-06 02:34:42] 2025-11-06 09:34:08,775 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3765.7693437499997
[2025-11-06 02:34:42] 2025-11-06 09:34:08,777 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6873882124/memory_monitor_summary.json (trf name=prmon)
[2025-11-06 02:34:42] 2025-11-06 09:34:08,777 | INFO     | extracted standard info from prmon json
[2025-11-06 02:34:42] 2025-11-06 09:34:08,777 | INFO     | extracted standard memory fields from prmon json
[2025-11-06 02:34:42] 2025-11-06 09:34:08,777 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-06 02:34:42] 2025-11-06 09:34:08,777 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-06 02:34:42] 2025-11-06 09:34:08,777 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-06 02:34:42] 2025-11-06 09:34:08,777 | INFO     | fitting pss+swap vs Time
[2025-11-06 02:34:42] 2025-11-06 09:34:08,777 | INFO     | sum of square deviations: 1802824.5
[2025-11-06 02:34:42] 2025-11-06 09:34:08,777 | INFO     | sum of deviations: -181199981.50000003
[2025-11-06 02:34:42] 2025-11-06 09:34:08,777 | INFO     | mean x: 1762420953.5
[2025-11-06 02:34:42] 2025-11-06 09:34:08,777 | INFO     | mean y: 2567304.0555555555
[2025-11-06 02:34:42] 2025-11-06 09:34:08,777 | INFO     | intersect: 177141631128.30045
[2025-11-06 02:34:42] 2025-11-06 09:34:08,777 | INFO     | chi2: 0.020820273669247387
[2025-11-06 02:34:42] 2025-11-06 09:34:08,777 | INFO     | current memory leak: -100.51 B/s (using 18 data points, chi2=0.02)
[2025-11-06 02:34:42] 2025-11-06 09:34:08,778 | INFO     | could have reported an average CPU frequency of 4129 MHz (4 samples)
[2025-11-06 02:34:42] 2025-11-06 09:34:08,778 | INFO     | ..............................
[2025-11-06 02:34:42] 2025-11-06 09:34:08,778 | INFO     | . Timing measurements:
[2025-11-06 02:34:42] 2025-11-06 09:34:08,778 | INFO     | . get job = 0 s
[2025-11-06 02:34:42] 2025-11-06 09:34:08,778 | INFO     | . initial setup = 2 s
[2025-11-06 02:34:42] 2025-11-06 09:34:08,778 | INFO     | . payload setup = 2 s
[2025-11-06 02:34:42] 2025-11-06 09:34:08,778 | INFO     | . stage-in = 0 s
[2025-11-06 02:34:42] 2025-11-06 09:34:08,778 | INFO     | . payload execution = 1506 s
[2025-11-06 02:34:42] 2025-11-06 09:34:08,778 | INFO     | . stage-out = 0 s
[2025-11-06 02:34:42] 2025-11-06 09:34:08,778 | INFO     | . log creation = 0 s
[2025-11-06 02:34:42] 2025-11-06 09:34:08,778 | INFO     | ..............................
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | 
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | job summary report
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | --------------------------------------------------
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | PanDA job id: 6873882124
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | task id: 47240594
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | errors: (none)
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | pilot state: finished 
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | transexitcode: 0
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | exeerrorcode: 0
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | exeerrordiag: 
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | exitcode: 0
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | exitmsg: OK
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | cpuconsumptiontime: 11052 s
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | nevents: 400
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | neventsw: 0
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | pid: 607121
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | pgrp: 607121
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | corecount: 8
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | event service: False
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | sizes: {0: 2348988, 2: 2349250, 11: 2349278, 1512: 2374051, 1513: 2383063, 1517: 2383119, 1523: 2383441}
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | --------------------------------------------------
[2025-11-06 02:34:42] 2025-11-06 09:34:08,801 | INFO     | 
[2025-11-06 02:34:42] 2025-11-06 09:34:08,802 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | job 6873882124 has completed (purged errors)
[2025-11-06 02:34:42] 2025-11-06 09:34:08,812 | INFO     | overall cleanup function is called
[2025-11-06 02:34:42] 2025-11-06 09:34:09,818 | INFO     | --- collectZombieJob: --- 10, [607121]
[2025-11-06 02:34:42] 2025-11-06 09:34:09,818 | INFO     | zombie collector waiting for pid 607121
[2025-11-06 02:34:42] 2025-11-06 09:34:09,819 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-06 02:34:42] 2025-11-06 09:34:09,819 | INFO     | collected zombie processes
[2025-11-06 02:34:42] 2025-11-06 09:34:09,819 | INFO     | will attempt to kill all subprocesses of pid=607121
[2025-11-06 02:34:42] 2025-11-06 09:34:09,858 | INFO     | process IDs to be killed: [607121] (in reverse order)
[2025-11-06 02:34:42] 2025-11-06 09:34:09,880 | WARNING  | found no corresponding commands to process id(s)
[2025-11-06 02:34:42] 2025-11-06 09:34:09,880 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-06 02:34:42] 2025-11-06 09:34:09,882 | INFO     | did not find any defunct processes belonging to 607121
[2025-11-06 02:34:42] 2025-11-06 09:34:09,884 | INFO     | did not find any defunct processes belonging to 607121
[2025-11-06 02:34:42] 2025-11-06 09:34:09,885 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-06 02:34:42] 2025-11-06 09:34:09,885 | INFO     | ready for new job
[2025-11-06 02:34:42] 2025-11-06 09:34:09,885 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-06 02:34:42] 2025-11-06 09:34:09,886 | INFO     | ***************************************
[2025-11-06 02:34:42] 2025-11-06 09:34:09,886 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-06 02:34:42] 2025-11-06 09:34:09,886 | INFO     | ***************************************
[2025-11-06 02:34:42] 2025-11-06 09:34:09,886 | INFO     | 
[2025-11-06 02:34:42] 2025-11-06 09:34:09,887 | INFO     | architecture information:
[2025-11-06 02:34:42] 2025-11-06 09:34:09,887 | INFO     | executing command: cat /etc/os-release
[2025-11-06 02:34:42] 2025-11-06 09:34:09,894 | INFO     | cat /etc/os-release:
[2025-11-06 02:34:42] NAME="CentOS Linux"
[2025-11-06 02:34:42] VERSION="7 (Core)"
[2025-11-06 02:34:42] ID="centos"
[2025-11-06 02:34:42] ID_LIKE="rhel fedora"
[2025-11-06 02:34:42] VERSION_ID="7"
[2025-11-06 02:34:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-06 02:34:42] ANSI_COLOR="0;31"
[2025-11-06 02:34:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-06 02:34:42] HOME_URL="https://www.centos.org/"
[2025-11-06 02:34:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-06 02:34:42] 
[2025-11-06 02:34:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-06 02:34:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-06 02:34:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-06 02:34:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-06 02:34:42] 
[2025-11-06 02:34:42] 2025-11-06 09:34:09,894 | INFO     | ***************************************
[2025-11-06 02:34:42] 2025-11-06 09:34:10,397 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-11-06 02:34:42] 2025-11-06 09:34:10,404 | INFO     | sufficient remaining disk space (677531090944 B)
[2025-11-06 02:34:42] 2025-11-06 09:34:10,404 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-06 02:34:42] 2025-11-06 09:34:10,404 | INFO     | current server update state: UPDATING_FINAL
[2025-11-06 02:34:42] 2025-11-06 09:34:10,404 | INFO     | update_server=False
[2025-11-06 02:34:42] 2025-11-06 09:34:10,404 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-06 02:34:42] 2025-11-06 09:34:10,405 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-06 02:34:42] 2025-11-06 09:34:10,405 | INFO     | aborting loop
[2025-11-06 02:34:42] 2025-11-06 09:34:10,405 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-06 02:34:42] 2025-11-06 09:34:10,405 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-06 02:34:42] 2025-11-06 09:34:10,721 | INFO     | all job control threads have been joined
[2025-11-06 02:34:42] 2025-11-06 09:34:11,367 | INFO     | all data control threads have been joined
[2025-11-06 02:34:42] 2025-11-06 09:34:11,408 | INFO     | [job] retrieve thread has finished
[2025-11-06 02:34:42] 2025-11-06 09:34:11,410 | INFO     | [job] job monitor thread has finished
[2025-11-06 02:34:42] 2025-11-06 09:34:11,410 | INFO     | [job] queue monitor thread has finished
[2025-11-06 02:34:42] 2025-11-06 09:34:11,497 | INFO     | [payload] failed_post thread has finished
[2025-11-06 02:34:42] 2025-11-06 09:34:11,726 | INFO     | [job] control thread has finished
[2025-11-06 02:34:42] 2025-11-06 09:34:11,732 | INFO     | all payload control threads have been joined
[2025-11-06 02:34:42] 2025-11-06 09:34:11,880 | INFO     | [payload] execute_payloads thread has finished
[2025-11-06 02:34:42] 2025-11-06 09:34:11,894 | INFO     | [job] validate thread has finished
[2025-11-06 02:34:42] 2025-11-06 09:34:11,964 | INFO     | [job] create_data_payload thread has finished
[2025-11-06 02:34:42] 2025-11-06 09:34:12,023 | INFO     | [payload] validate_pre thread has finished
[2025-11-06 02:34:42] 2025-11-06 09:34:12,041 | INFO     | [data] copytool_in thread has finished
[2025-11-06 02:34:42] 2025-11-06 09:34:12,059 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-06 02:34:42] 2025-11-06 09:34:12,372 | INFO     | [data] control thread has finished
[2025-11-06 02:34:42] 2025-11-06 09:34:12,410 | INFO     | [data] copytool_out thread has finished
[2025-11-06 02:34:42] 2025-11-06 09:34:12,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-06 02:34:42] 2025-11-06 09:34:12,735 | INFO     | [payload] control thread has finished
[2025-11-06 02:34:42] 2025-11-06 09:34:12,805 | INFO     | [payload] validate_post thread has finished
[2025-11-06 02:34:42] 2025-11-06 09:34:16,728 | INFO     | [data] queue_monitor thread has finished
[2025-11-06 02:34:42] 2025-11-06 09:34:35,335 | INFO     | [monitor] cgroup control has ended
[2025-11-06 02:34:42] 2025-11-06 09:34:37,340 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133751371839296)>', '<ExcThread(monitor, started 133750895675136)>']
[2025-11-06 02:34:42] 2025-11-06 09:34:40,634 | INFO     | PID=600467 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-06 02:34:42] 2025-11-06 09:34:40,634 | INFO     | .. there are 2 such processes running
[2025-11-06 02:34:42] 2025-11-06 09:34:40,634 | INFO     | found 0 job(s) in 20 queues
[2025-11-06 02:34:42] 2025-11-06 09:34:40,634 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-06 02:34:42] 2025-11-06 09:34:40,634 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-06 02:34:42] 2025-11-06 09:34:40,635 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-06 02:34:42] 2025-11-06 09:34:40,635 | INFO     | [monitor] control thread has ended
[2025-11-06 02:34:42] 2025-11-06 09:34:42,365 | INFO     | all workflow threads have been joined
[2025-11-06 02:34:42] 2025-11-06 09:34:42,380 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-06 02:34:42] 2025-11-06 09:34:42,381 | INFO     | traces error code: 0
[2025-11-06 02:34:42] 2025-11-06 09:34:42,381 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-06 02:34:42] 2025-11-06 09:34:42,415 [wrapper] ==== pilot stdout END ====
[2025-11-06 02:34:42] 2025-11-06 09:34:42,416 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-06 02:34:42] 2025-11-06 09:34:42,417 [wrapper] pilotpid: 600467
[2025-11-06 02:34:42] 2025-11-06 09:34:42,418 [wrapper] Pilot exit status: 0
[2025-11-06 02:34:42] 2025-11-06 09:34:42,422 [wrapper] pandaids: 6873882124
[2025-11-06 02:34:42] 2025-11-06 09:34:42,436 [wrapper] cleanup supervisor_pilot  635326 600468
[2025-11-06 02:34:42] 2025-11-06 09:34:42,437 [wrapper] Test setup, not cleaning
[2025-11-06 02:34:42] 2025-11-06 09:34:42,438 [wrapper] apfmon messages muted
[2025-11-06 02:34:42] 2025-11-06 09:34:42,439 [wrapper] ==== wrapper stdout END ====
[2025-11-06 02:34:42] 2025-11-06 09:34:42,440 [wrapper] ==== wrapper stderr END ====
[2025-11-06 02:34:42]  *** Error codes and diagnostics ***
[2025-11-06 02:34:42]     "exeErrorCode": 0,
[2025-11-06 02:34:42]     "exeErrorDiag": "",
[2025-11-06 02:34:42]     "pilotErrorCode": 0,
[2025-11-06 02:34:42]     "pilotErrorDiag": "",
[2025-11-06 02:34:42]  *** Listing of results directory ***
[2025-11-06 02:34:42] total 465328
[2025-11-06 02:34:42] -rwx------ 1 boinc boinc     36292 Nov  6 01:41 runpilot2-wrapper.sh
[2025-11-06 02:34:42] -rw-r--r-- 1 boinc boinc      5112 Nov  6 01:41 queuedata.json
[2025-11-06 02:34:42] -rw-r--r-- 1 boinc boinc    576529 Nov  6 01:41 pilot3.tar.gz
[2025-11-06 02:34:42] -rw-r--r-- 1 boinc boinc       100 Nov  6 02:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-06 02:34:42] -rwxr-xr-x 1 boinc boinc      7986 Nov  6 02:08 run_atlas
[2025-11-06 02:34:42] -rw-r--r-- 1 boinc boinc       105 Nov  6 02:08 job.xml
[2025-11-06 02:34:42] -rw-r--r-- 1 boinc boinc      9912 Nov  6 02:08 init_data.xml
[2025-11-06 02:34:42] -rw-r--r-- 2 boinc boinc 277867438 Nov  6 02:08 EVNT.47240566._000004.pool.root.1
[2025-11-06 02:34:42] -rw-r--r-- 2 boinc boinc     15120 Nov  6 02:08 start_atlas.sh
[2025-11-06 02:34:42] drwxrwx--x 2 boinc boinc      4096 Nov  6 02:08 shared
[2025-11-06 02:34:42] -rw-r--r-- 2 boinc boinc    589943 Nov  6 02:08 input.tar.gz
[2025-11-06 02:34:42] -rw-r--r-- 1 boinc boinc         0 Nov  6 02:08 boinc_lockfile
[2025-11-06 02:34:42] -rw-r--r-- 1 boinc boinc      2599 Nov  6 02:08 pandaJob.out
[2025-11-06 02:34:42] -rw------- 1 boinc boinc    985767 Nov  6 02:08 agis_schedconf.cvmfs.json
[2025-11-06 02:34:42] -rw------- 1 boinc boinc   1560632 Nov  6 02:08 agis_ddmendpoints.agis.ALL.json
[2025-11-06 02:34:42] drwx------ 5 boinc boinc      4096 Nov  6 02:08 pilot3
[2025-11-06 02:34:42] -rw-r--r-- 1 boinc boinc       529 Nov  6 02:33 boinc_task_state.xml
[2025-11-06 02:34:42] -rw------- 1 boinc boinc 193588580 Nov  6 02:33 HITS.47240594._000208.pool.root.1
[2025-11-06 02:34:42] -rw------- 1 boinc boinc      1022 Nov  6 02:33 memory_monitor_summary.json
[2025-11-06 02:34:42] -rw------- 1 boinc boinc    273957 Nov  6 02:33 log.47240594._000208.job.log.tgz.1
[2025-11-06 02:34:42] -rw------- 1 boinc boinc      7724 Nov  6 02:34 heartbeat.json
[2025-11-06 02:34:42] -rw-r--r-- 1 boinc boinc        27 Nov  6 02:34 wrapper_checkpoint.txt
[2025-11-06 02:34:42] -rw-r--r-- 1 boinc boinc      8192 Nov  6 02:34 boinc_mmap_file
[2025-11-06 02:34:42] -rw------- 1 boinc boinc        95 Nov  6 02:34 pilot_heartbeat.json
[2025-11-06 02:34:42] -rw------- 1 boinc boinc      4830 Nov  6 02:34 pilotlog.txt
[2025-11-06 02:34:42] -rw------- 1 boinc boinc    269605 Nov  6 02:34 log.47240594._000208.job.log.1
[2025-11-06 02:34:42] -rw------- 1 boinc boinc       357 Nov  6 02:34 output.list
[2025-11-06 02:34:42] -rw-r--r-- 1 boinc boinc       620 Nov  6 02:34 runtime_log
[2025-11-06 02:34:42] -rw------- 1 boinc boinc    563200 Nov  6 02:34 result.tar.gz
[2025-11-06 02:34:42] -rw------- 1 boinc boinc       651 Nov  6 02:34 XutKDmwjAb8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNGJODmt0gDBo.diag
[2025-11-06 02:34:42] -rw-r--r-- 1 boinc boinc      8786 Nov  6 02:34 runtime_log.err
[2025-11-06 02:34:42] -rw-r--r-- 1 boinc boinc     22890 Nov  6 02:34 stderr.txt
[2025-11-06 02:34:42] HITS file was successfully produced:
[2025-11-06 02:34:42] -rw------- 1 boinc boinc 193588580 Nov  6 02:33 shared/HITS.pool.root.1
[2025-11-06 02:34:42]  *** Contents of shared directory: ***
[2025-11-06 02:34:42] total 461564
[2025-11-06 02:34:42] -rw-r--r-- 2 boinc boinc 277867438 Nov  6 02:08 ATLAS.root_0
[2025-11-06 02:34:42] -rw-r--r-- 2 boinc boinc     15120 Nov  6 02:08 start_atlas.sh
[2025-11-06 02:34:42] -rw-r--r-- 2 boinc boinc    589943 Nov  6 02:08 input.tar.gz
[2025-11-06 02:34:42] -rw------- 1 boinc boinc 193588580 Nov  6 02:33 HITS.pool.root.1
[2025-11-06 02:34:42] -rw------- 1 boinc boinc    563200 Nov  6 02:34 result.tar.gz
02:34:44 (596605): run_atlas exited; CPU time 11057.570192
02:34:44 (596605): called boinc_finish(0)

</stderr_txt>
]]>

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