Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
01:42:46 (558955): wrapper (7.7.26015): starting
01:42:46 (558955): wrapper: running run_atlas (--nthreads 8)
[2025-11-06 01:42:46] Arguments: --nthreads 8
[2025-11-06 01:42:46] Threads: 8
[2025-11-06 01:42:46] Checking for CVMFS
[2025-11-06 01:42:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-06 01:42:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-06 01:42:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-06 01:42:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-06 01:42:49] 2.13.3.0 559165 0 25104 152530 3 1 1654152 4096001 0 130560 0 0 0.000 1291 987 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-06 01:42:49] CVMFS is ok
[2025-11-06 01:42:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-06 01:42:49] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-06 01:42:49] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-06 01:42:49] Further information can be found at the LHC@home message board.
[2025-11-06 01:42:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-06 01:42:49] Checking for apptainer binary...
[2025-11-06 01:42:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-06 01:42:49] Running /usr/bin/apptainer --version
[2025-11-06 01:42:49] apptainer version 1.4.4
[2025-11-06 01:42:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-06 01:42:49] garage
[2025-11-06 01:42:49] apptainer works
[2025-11-06 01:42:49] Set ATHENA_PROC_NUMBER=8
[2025-11-06 01:42:49] Set ATHENA_CORE_NUMBER=8
[2025-11-06 01:42:49] Starting ATLAS job with PandaID=6873882121
[2025-11-06 01:42:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-06 02:18:19]  *** The last 200 lines of the pilot log: ***
[2025-11-06 02:18:19]  scope=mc23_13p6TeV
[2025-11-06 02:18:19]  status=None
[2025-11-06 02:18:19]  status_code=0
[2025-11-06 02:18:19]  storage_token=
[2025-11-06 02:18:19]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6873882121/log.47240594._000205.job.log.tgz.1
[2025-11-06 02:18:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/41/e3/log.47240594._000205.job.log.tgz.1
[2025-11-06 02:18:19]  workdir=None
[2025-11-06 02:18:19] ]
[2025-11-06 02:18:19] 2025-11-06 09:17:41,238 | INFO     | transferring file log.47240594._000205.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6873882121/log.47240594._000205.job.log.tgz.1 to /var/lib/boinc
[2025-11-06 02:18:19] 2025-11-06 09:17:41,238 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6873882121/log.47240594._000205.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.472405
[2025-11-06 02:18:19] 2025-11-06 09:17:41,245 | INFO     | adding to output.list: log.47240594._000205.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/41/e3/log.47240594._000205.job.log.tg
[2025-11-06 02:18:19] 2025-11-06 09:17:41,246 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-11-06 02:18:19] 2025-11-06 09:17:41,246 | INFO     | summary of transferred files:
[2025-11-06 02:18:19] 2025-11-06 09:17:41,246 | INFO     |  -- lfn=log.47240594._000205.job.log.tgz.1, status_code=0, status=transferred
[2025-11-06 02:18:19] 2025-11-06 09:17:41,246 | INFO     | stage-out finished correctly
[2025-11-06 02:18:19] 2025-11-06 09:17:41,246 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-06 02:18:19] 2025-11-06 09:17:41,853 | INFO     | time since job start (2076s) is within the limit (172800.0s)
[2025-11-06 02:18:19] 2025-11-06 09:17:42,728 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-06 02:18:19] 2025-11-06 09:17:43,858 | INFO     | time since job start (2078s) is within the limit (172800.0s)
[2025-11-06 02:18:19] 2025-11-06 09:17:44,910 | INFO     | PID=563386 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-06 02:18:19] 2025-11-06 09:17:44,910 | INFO     | .. there are 2 such processes running
[2025-11-06 02:18:19] 2025-11-06 09:17:45,753 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-06 02:18:19] 2025-11-06 09:17:45,753 | INFO     | job 6873882121 has state=finished
[2025-11-06 02:18:19] 2025-11-06 09:17:45,753 | INFO     | preparing for final server update for job 6873882121 in state='finished'
[2025-11-06 02:18:19] 2025-11-06 09:17:45,753 | INFO     | this job has now completed (state=finished)
[2025-11-06 02:18:19] 2025-11-06 09:17:45,753 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-06 02:18:19] 2025-11-06 09:17:45,753 | INFO     | log transfer has been attempted: DONE
[2025-11-06 02:18:19] 2025-11-06 09:17:45,753 | INFO     | job 6873882121 has finished - writing final server update
[2025-11-06 02:18:19] 2025-11-06 09:17:45,753 | INFO     | total number of processed events: 400 (read)
[2025-11-06 02:18:19] 2025-11-06 09:17:45,754 | INFO     | executing command: lscpu
[2025-11-06 02:18:19] 2025-11-06 09:17:45,768 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-06 02:18:19] 2025-11-06 09:17:45,814 | WARNING  | process 576025 can no longer be monitored (due to stat problems) - aborting
[2025-11-06 02:18:19] 2025-11-06 09:17:45,814 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6873882121/memory_monitor_summary.json (trf name=prmon)
[2025-11-06 02:18:19] 2025-11-06 09:17:45,851 | INFO     | number of running child processes to parent process 576025: 1
[2025-11-06 02:18:19] 2025-11-06 09:17:45,851 | INFO     | maximum number of monitored processes: 6
[2025-11-06 02:18:19] 2025-11-06 09:17:45,910 | INFO     | time since job start (2080s) is within the limit (172800.0s)
[2025-11-06 02:18:19] 2025-11-06 09:17:47,296 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-06 02:18:19] 2025-11-06 09:17:47,298 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4103.946812499999
[2025-11-06 02:18:19] 2025-11-06 09:17:47,300 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6873882121/memory_monitor_summary.json (trf name=prmon)
[2025-11-06 02:18:19] 2025-11-06 09:17:47,301 | INFO     | extracted standard info from prmon json
[2025-11-06 02:18:19] 2025-11-06 09:17:47,301 | INFO     | extracted standard memory fields from prmon json
[2025-11-06 02:18:19] 2025-11-06 09:17:47,301 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-06 02:18:19] 2025-11-06 09:17:47,301 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-06 02:18:19] 2025-11-06 09:17:47,301 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-06 02:18:19] 2025-11-06 09:17:47,301 | INFO     | fitting pss+swap vs Time
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | sum of square deviations: 6094998.0
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | sum of deviations: -866052623.9999999
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | mean x: 1762419699.0
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | mean y: 2680944.6666666665
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | intersect: 250429047763.53024
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | chi2: 0.014486556198594258
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | current memory leak: -142.09 B/s (using 27 data points, chi2=0.01)
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | could have reported an average CPU frequency of 3975 MHz (5 samples)
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | ..............................
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | . Timing measurements:
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | . get job = 0 s
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | . initial setup = 3 s
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | . payload setup = 2 s
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | . stage-in = 0 s
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | . payload execution = 2058 s
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | . stage-out = 0 s
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | . log creation = 0 s
[2025-11-06 02:18:19] 2025-11-06 09:17:47,302 | INFO     | ..............................
[2025-11-06 02:18:19] 2025-11-06 09:17:47,461 | INFO     | 
[2025-11-06 02:18:19] 2025-11-06 09:17:47,461 | INFO     | job summary report
[2025-11-06 02:18:19] 2025-11-06 09:17:47,461 | INFO     | --------------------------------------------------
[2025-11-06 02:18:19] 2025-11-06 09:17:47,461 | INFO     | PanDA job id: 6873882121
[2025-11-06 02:18:19] 2025-11-06 09:17:47,461 | INFO     | task id: 47240594
[2025-11-06 02:18:19] 2025-11-06 09:17:47,461 | INFO     | errors: (none)
[2025-11-06 02:18:19] 2025-11-06 09:17:47,461 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-06 02:18:19] 2025-11-06 09:17:47,461 | INFO     | pilot state: finished 
[2025-11-06 02:18:19] 2025-11-06 09:17:47,461 | INFO     | transexitcode: 0
[2025-11-06 02:18:19] 2025-11-06 09:17:47,461 | INFO     | exeerrorcode: 0
[2025-11-06 02:18:19] 2025-11-06 09:17:47,462 | INFO     | exeerrordiag: 
[2025-11-06 02:18:19] 2025-11-06 09:17:47,462 | INFO     | exitcode: 0
[2025-11-06 02:18:19] 2025-11-06 09:17:47,462 | INFO     | exitmsg: OK
[2025-11-06 02:18:19] 2025-11-06 09:17:47,462 | INFO     | cpuconsumptiontime: 14972 s
[2025-11-06 02:18:19] 2025-11-06 09:17:47,462 | INFO     | nevents: 400
[2025-11-06 02:18:19] 2025-11-06 09:17:47,462 | INFO     | neventsw: 0
[2025-11-06 02:18:19] 2025-11-06 09:17:47,462 | INFO     | pid: 576025
[2025-11-06 02:18:19] 2025-11-06 09:17:47,462 | INFO     | pgrp: 576025
[2025-11-06 02:18:19] 2025-11-06 09:17:47,462 | INFO     | corecount: 8
[2025-11-06 02:18:19] 2025-11-06 09:17:47,462 | INFO     | event service: False
[2025-11-06 02:18:19] 2025-11-06 09:17:47,462 | INFO     | sizes: {0: 2348988, 2: 2349250, 11: 2349278, 2064: 2374335, 2065: 2383347, 2066: 2383403, 2071: 2383757}
[2025-11-06 02:18:19] 2025-11-06 09:17:47,462 | INFO     | --------------------------------------------------
[2025-11-06 02:18:19] 2025-11-06 09:17:47,462 | INFO     | 
[2025-11-06 02:18:19] 2025-11-06 09:17:47,462 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-11-06 02:18:19] 2025-11-06 09:17:47,471 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,471 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,471 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,471 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,471 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,471 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,471 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,471 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,471 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,472 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,472 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,472 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,472 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,472 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,472 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,472 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,472 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,472 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-06 02:18:19] 2025-11-06 09:17:47,472 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,472 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-06 02:18:19] 2025-11-06 09:17:47,472 | INFO     | job 6873882121 has completed (purged errors)
[2025-11-06 02:18:19] 2025-11-06 09:17:47,472 | INFO     | overall cleanup function is called
[2025-11-06 02:18:19] 2025-11-06 09:17:48,478 | INFO     | --- collectZombieJob: --- 10, [576025]
[2025-11-06 02:18:19] 2025-11-06 09:17:48,478 | INFO     | zombie collector waiting for pid 576025
[2025-11-06 02:18:19] 2025-11-06 09:17:48,478 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-06 02:18:19] 2025-11-06 09:17:48,478 | INFO     | collected zombie processes
[2025-11-06 02:18:19] 2025-11-06 09:17:48,478 | INFO     | will attempt to kill all subprocesses of pid=576025
[2025-11-06 02:18:19] 2025-11-06 09:17:48,516 | INFO     | process IDs to be killed: [576025] (in reverse order)
[2025-11-06 02:18:19] 2025-11-06 09:17:48,539 | WARNING  | found no corresponding commands to process id(s)
[2025-11-06 02:18:19] 2025-11-06 09:17:48,539 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-06 02:18:19] 2025-11-06 09:17:48,540 | INFO     | did not find any defunct processes belonging to 576025
[2025-11-06 02:18:19] 2025-11-06 09:17:48,542 | INFO     | did not find any defunct processes belonging to 576025
[2025-11-06 02:18:19] 2025-11-06 09:17:48,542 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-06 02:18:19] 2025-11-06 09:17:48,542 | INFO     | ready for new job
[2025-11-06 02:18:19] 2025-11-06 09:17:48,542 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-06 02:18:19] 2025-11-06 09:17:48,542 | INFO     | ***************************************
[2025-11-06 02:18:19] 2025-11-06 09:17:48,543 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-06 02:18:19] 2025-11-06 09:17:48,543 | INFO     | ***************************************
[2025-11-06 02:18:19] 2025-11-06 09:17:48,543 | INFO     | 
[2025-11-06 02:18:19] 2025-11-06 09:17:48,543 | INFO     | architecture information:
[2025-11-06 02:18:19] 2025-11-06 09:17:48,543 | INFO     | executing command: cat /etc/os-release
[2025-11-06 02:18:19] 2025-11-06 09:17:48,550 | INFO     | cat /etc/os-release:
[2025-11-06 02:18:19] NAME="CentOS Linux"
[2025-11-06 02:18:19] VERSION="7 (Core)"
[2025-11-06 02:18:19] ID="centos"
[2025-11-06 02:18:19] ID_LIKE="rhel fedora"
[2025-11-06 02:18:19] VERSION_ID="7"
[2025-11-06 02:18:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-06 02:18:19] ANSI_COLOR="0;31"
[2025-11-06 02:18:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-06 02:18:19] HOME_URL="https://www.centos.org/"
[2025-11-06 02:18:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-06 02:18:19] 
[2025-11-06 02:18:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-06 02:18:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-06 02:18:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-06 02:18:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-06 02:18:19] 
[2025-11-06 02:18:19] 2025-11-06 09:17:48,550 | INFO     | ***************************************
[2025-11-06 02:18:19] 2025-11-06 09:17:49,052 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-11-06 02:18:19] 2025-11-06 09:17:49,060 | INFO     | sufficient remaining disk space (677277335552 B)
[2025-11-06 02:18:19] 2025-11-06 09:17:49,060 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-06 02:18:19] 2025-11-06 09:17:49,060 | INFO     | current server update state: UPDATING_FINAL
[2025-11-06 02:18:19] 2025-11-06 09:17:49,060 | INFO     | update_server=False
[2025-11-06 02:18:19] 2025-11-06 09:17:49,060 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-06 02:18:19] 2025-11-06 09:17:49,060 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-06 02:18:19] 2025-11-06 09:17:49,060 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-06 02:18:19] 2025-11-06 09:17:49,242 | INFO     | all data control threads have been joined
[2025-11-06 02:18:19] 2025-11-06 09:17:49,275 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-06 02:18:19] 2025-11-06 09:17:49,359 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-06 02:18:19] 2025-11-06 09:17:49,359 | INFO     | aborting loop
[2025-11-06 02:18:19] 2025-11-06 09:17:49,371 | INFO     | all payload control threads have been joined
[2025-11-06 02:18:19] 2025-11-06 09:17:49,673 | INFO     | all job control threads have been joined
[2025-11-06 02:18:19] 2025-11-06 09:17:50,065 | INFO     | [job] retrieve thread has finished
[2025-11-06 02:18:19] 2025-11-06 09:17:50,066 | INFO     | [job] queue monitor thread has finished
[2025-11-06 02:18:19] 2025-11-06 09:17:50,110 | INFO     | [payload] validate_pre thread has finished
[2025-11-06 02:18:19] 2025-11-06 09:17:50,178 | INFO     | [data] copytool_in thread has finished
[2025-11-06 02:18:19] 2025-11-06 09:17:50,247 | INFO     | [data] control thread has finished
[2025-11-06 02:18:19] 2025-11-06 09:17:50,364 | INFO     | [job] job monitor thread has finished
[2025-11-06 02:18:19] 2025-11-06 09:17:50,376 | INFO     | [payload] control thread has finished
[2025-11-06 02:18:19] 2025-11-06 09:17:50,678 | INFO     | [job] control thread has finished
[2025-11-06 02:18:19] 2025-11-06 09:17:50,979 | INFO     | [payload] failed_post thread has finished
[2025-11-06 02:18:19] 2025-11-06 09:17:51,010 | INFO     | [payload] execute_payloads thread has finished
[2025-11-06 02:18:19] 2025-11-06 09:17:51,280 | INFO     | [data] copytool_out thread has finished
[2025-11-06 02:18:19] 2025-11-06 09:17:51,463 | INFO     | [job] validate thread has finished
[2025-11-06 02:18:19] 2025-11-06 09:17:51,508 | INFO     | [job] create_data_payload thread has finished
[2025-11-06 02:18:19] 2025-11-06 09:17:51,637 | INFO     | [payload] validate_post thread has finished
[2025-11-06 02:18:19] 2025-11-06 09:17:53,065 | INFO     | [data] queue_monitor thread has finished
[2025-11-06 02:18:19] 2025-11-06 09:17:59,680 | INFO     | job.realtimelogging is not enabled
[2025-11-06 02:18:19] 2025-11-06 09:18:00,685 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-06 02:18:19] 2025-11-06 09:18:07,121 | INFO     | [monitor] cgroup control has ended
[2025-11-06 02:18:19] 2025-11-06 09:18:09,031 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133760047462208)>', '<ExcThread(monitor, started 133759485609728)>']
[2025-11-06 02:18:19] 2025-11-06 09:18:14,056 | INFO     | all workflow threads have been joined
[2025-11-06 02:18:19] 2025-11-06 09:18:14,056 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-06 02:18:19] 2025-11-06 09:18:14,056 | INFO     | traces error code: 0
[2025-11-06 02:18:19] 2025-11-06 09:18:14,056 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-06 02:18:19] 2025-11-06 09:18:19,020 | INFO     | PID=563386 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-06 02:18:19] 2025-11-06 09:18:19,021 | INFO     | .. there are 2 such processes running
[2025-11-06 02:18:19] 2025-11-06 09:18:19,021 | INFO     | found 0 job(s) in 20 queues
[2025-11-06 02:18:19] 2025-11-06 09:18:19,021 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-06 02:18:19] 2025-11-06 09:18:19,021 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-06 02:18:19] 2025-11-06 09:18:19,021 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-06 02:18:19] 2025-11-06 09:18:19,021 | INFO     | [monitor] control thread has ended
[2025-11-06 02:18:19] 2025-11-06 09:18:19,055 [wrapper] ==== pilot stdout END ====
[2025-11-06 02:18:19] 2025-11-06 09:18:19,057 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-06 02:18:19] 2025-11-06 09:18:19,058 [wrapper] pilotpid: 563386
[2025-11-06 02:18:19] 2025-11-06 09:18:19,059 [wrapper] Pilot exit status: 0
[2025-11-06 02:18:19] 2025-11-06 09:18:19,063 [wrapper] pandaids: 6873882121
[2025-11-06 02:18:19] 2025-11-06 09:18:19,078 [wrapper] cleanup supervisor_pilot  613797 563387
[2025-11-06 02:18:19] 2025-11-06 09:18:19,079 [wrapper] Test setup, not cleaning
[2025-11-06 02:18:19] 2025-11-06 09:18:19,080 [wrapper] apfmon messages muted
[2025-11-06 02:18:19] 2025-11-06 09:18:19,081 [wrapper] ==== wrapper stdout END ====
[2025-11-06 02:18:19] 2025-11-06 09:18:19,082 [wrapper] ==== wrapper stderr END ====
[2025-11-06 02:18:19]  *** Error codes and diagnostics ***
[2025-11-06 02:18:19]     "exeErrorCode": 0,
[2025-11-06 02:18:19]     "exeErrorDiag": "",
[2025-11-06 02:18:19]     "pilotErrorCode": 0,
[2025-11-06 02:18:19]     "pilotErrorDiag": "",
[2025-11-06 02:18:19]  *** Listing of results directory ***
[2025-11-06 02:18:19] total 467960
[2025-11-06 02:18:19] -rwx------ 1 boinc boinc     36292 Nov  6 01:41 runpilot2-wrapper.sh
[2025-11-06 02:18:19] -rw-r--r-- 1 boinc boinc      5112 Nov  6 01:41 queuedata.json
[2025-11-06 02:18:19] -rw-r--r-- 1 boinc boinc    576529 Nov  6 01:41 pilot3.tar.gz
[2025-11-06 02:18:19] -rw-r--r-- 1 boinc boinc       100 Nov  6 01:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-06 02:18:19] -rwxr-xr-x 1 boinc boinc      7986 Nov  6 01:42 run_atlas
[2025-11-06 02:18:19] -rw-r--r-- 1 boinc boinc       105 Nov  6 01:42 job.xml
[2025-11-06 02:18:19] -rw-r--r-- 2 boinc boinc     15120 Nov  6 01:42 start_atlas.sh
[2025-11-06 02:18:19] drwxrwx--x 2 boinc boinc      4096 Nov  6 01:42 shared
[2025-11-06 02:18:19] -rw-r--r-- 2 boinc boinc    589943 Nov  6 01:42 input.tar.gz
[2025-11-06 02:18:19] -rw-r--r-- 1 boinc boinc      9912 Nov  6 01:42 init_data.xml
[2025-11-06 02:18:19] -rw-r--r-- 2 boinc boinc 277867438 Nov  6 01:42 EVNT.47240566._000004.pool.root.1
[2025-11-06 02:18:19] -rw-r--r-- 1 boinc boinc         0 Nov  6 01:42 boinc_lockfile
[2025-11-06 02:18:19] -rw-r--r-- 1 boinc boinc      2599 Nov  6 01:42 pandaJob.out
[2025-11-06 02:18:19] -rw------- 1 boinc boinc    985767 Nov  6 01:43 agis_schedconf.cvmfs.json
[2025-11-06 02:18:19] -rw------- 1 boinc boinc   1560632 Nov  6 01:43 agis_ddmendpoints.agis.ALL.json
[2025-11-06 02:18:19] drwx------ 5 boinc boinc      4096 Nov  6 01:43 pilot3
[2025-11-06 02:18:19] -rw------- 1 boinc boinc 196120542 Nov  6 02:17 HITS.47240594._000205.pool.root.1
[2025-11-06 02:18:19] -rw------- 1 boinc boinc      1021 Nov  6 02:17 memory_monitor_summary.json
[2025-11-06 02:18:19] -rw------- 1 boinc boinc    278851 Nov  6 02:17 log.47240594._000205.job.log.tgz.1
[2025-11-06 02:18:19] -rw-r--r-- 1 boinc boinc       529 Nov  6 02:17 boinc_task_state.xml
[2025-11-06 02:18:19] -rw------- 1 boinc boinc      7724 Nov  6 02:17 heartbeat.json
[2025-11-06 02:18:19] -rw-r--r-- 1 boinc boinc      8192 Nov  6 02:18 boinc_mmap_file
[2025-11-06 02:18:19] -rw-r--r-- 1 boinc boinc        27 Nov  6 02:18 wrapper_checkpoint.txt
[2025-11-06 02:18:19] -rw------- 1 boinc boinc       821 Nov  6 02:18 pilotlog.txt
[2025-11-06 02:18:19] -rw------- 1 boinc boinc        95 Nov  6 02:18 pilot_heartbeat.json
[2025-11-06 02:18:19] -rw------- 1 boinc boinc    347525 Nov  6 02:18 log.47240594._000205.job.log.1
[2025-11-06 02:18:19] -rw------- 1 boinc boinc       357 Nov  6 02:18 output.list
[2025-11-06 02:18:19] -rw-r--r-- 1 boinc boinc       620 Nov  6 02:18 runtime_log
[2025-11-06 02:18:19] -rw------- 1 boinc boinc    645120 Nov  6 02:18 result.tar.gz
[2025-11-06 02:18:19] -rw------- 1 boinc boinc       651 Nov  6 02:18 yYqKDmwjAb8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKGJODm9lXhrn.diag
[2025-11-06 02:18:19] -rw-r--r-- 1 boinc boinc      8786 Nov  6 02:18 runtime_log.err
[2025-11-06 02:18:19] -rw-r--r-- 1 boinc boinc     22402 Nov  6 02:18 stderr.txt
[2025-11-06 02:18:19] HITS file was successfully produced:
[2025-11-06 02:18:19] -rw------- 1 boinc boinc 196120542 Nov  6 02:17 shared/HITS.pool.root.1
[2025-11-06 02:18:19]  *** Contents of shared directory: ***
[2025-11-06 02:18:19] total 464116
[2025-11-06 02:18:19] -rw-r--r-- 2 boinc boinc     15120 Nov  6 01:42 start_atlas.sh
[2025-11-06 02:18:19] -rw-r--r-- 2 boinc boinc    589943 Nov  6 01:42 input.tar.gz
[2025-11-06 02:18:19] -rw-r--r-- 2 boinc boinc 277867438 Nov  6 01:42 ATLAS.root_0
[2025-11-06 02:18:19] -rw------- 1 boinc boinc 196120542 Nov  6 02:17 HITS.pool.root.1
[2025-11-06 02:18:19] -rw------- 1 boinc boinc    645120 Nov  6 02:18 result.tar.gz
02:18:20 (558955): run_atlas exited; CPU time 14980.142755
02:18:20 (558955): called boinc_finish(0)

</stderr_txt>
]]>

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